Wall clock time and date at job start Thu Apr 9 2020 14:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38171 * 120.02301 * 2 1 4 4 C 1.38243 * 120.05277 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.94352 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47044 * 60.00207 * 5 4 3 7 7 C 1.53002 * 109.46980 * 180.02562 * 5 4 3 8 8 C 1.52999 * 109.47058 * 300.00013 * 5 4 3 9 9 C 1.38291 * 120.11299 * 0.02562 * 4 3 2 10 10 C 1.38128 * 120.05385 * 359.68392 * 9 4 3 11 11 C 1.38708 * 120.03059 * 180.02562 * 2 1 3 12 12 O 1.35903 * 120.05359 * 359.97438 * 11 2 1 13 13 C 1.42902 * 116.99398 * 185.68246 * 12 11 2 14 14 H 1.09000 * 109.47245 * 35.19537 * 13 12 11 15 15 C 1.52995 * 109.47333 * 275.18745 * 13 12 11 16 16 C 1.53007 * 109.46406 * 155.19116 * 13 12 11 17 17 C 1.50703 * 109.47335 * 294.99965 * 16 13 12 18 18 H 1.08007 * 119.99596 * 0.02562 * 17 16 13 19 19 C 1.37876 * 120.00065 * 179.72743 * 17 16 13 20 20 N 1.31513 * 119.99974 * 180.27114 * 19 17 16 21 21 Si 1.86796 * 120.00013 * 0.27630 * 19 17 16 22 22 H 1.48501 * 109.47312 * 89.99932 * 21 19 17 23 23 H 1.48497 * 109.46933 * 210.00178 * 21 19 17 24 24 H 1.48504 * 109.47221 * 329.99970 * 21 19 17 25 25 H 1.09005 * 109.46716 * 269.97602 * 1 2 3 26 26 H 1.08993 * 109.47417 * 29.98084 * 1 2 3 27 27 H 1.09005 * 109.47092 * 149.98144 * 1 2 3 28 28 H 1.07999 * 119.97178 * 0.02562 * 3 2 1 29 29 H 1.08998 * 109.47457 * 60.00311 * 6 5 4 30 30 H 1.09002 * 109.47314 * 180.02562 * 6 5 4 31 31 H 1.09003 * 109.47227 * 299.99994 * 6 5 4 32 32 H 1.08997 * 109.46975 * 59.99945 * 7 5 4 33 33 H 1.09002 * 109.46700 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.47216 * 300.00122 * 7 5 4 35 35 H 1.09003 * 109.46948 * 60.00168 * 8 5 4 36 36 H 1.09002 * 109.47068 * 179.97438 * 8 5 4 37 37 H 1.08997 * 109.47253 * 300.00273 * 8 5 4 38 38 H 1.07996 * 119.97501 * 179.97438 * 9 4 3 39 39 H 1.08001 * 120.02634 * 180.32283 * 10 9 4 40 40 H 1.09000 * 109.47602 * 300.00574 * 15 13 12 41 41 H 1.09000 * 109.47082 * 60.00461 * 15 13 12 42 42 H 1.09002 * 109.46969 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.46559 * 174.99994 * 16 13 12 44 44 H 1.08996 * 109.47455 * 55.00070 * 16 13 12 45 45 H 0.96998 * 120.00340 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1963 0.0000 4 6 3.5808 1.1970 -0.0005 5 6 4.3323 2.5033 0.0001 6 6 3.9620 3.3041 1.2500 7 6 5.8370 2.2259 -0.0014 8 6 3.9610 3.3058 -1.2485 9 6 4.2752 0.0011 -0.0016 10 6 3.5887 -1.1975 0.0045 11 6 2.2012 -1.2009 -0.0005 12 8 1.5234 -2.3788 -0.0005 13 6 2.2982 -3.5730 0.1250 14 1 3.1466 -3.3881 0.7839 15 6 2.8065 -3.9985 -1.2539 16 6 1.4284 -4.6857 0.7135 17 6 1.0286 -4.3201 2.1198 18 1 1.3613 -3.3872 2.5506 19 6 0.2330 -5.1737 2.8543 20 7 -0.1202 -4.8522 4.0796 21 14 -0.3429 -6.7868 2.1091 22 1 0.6475 -7.8520 2.4086 23 1 -1.6590 -7.1576 2.6882 24 1 -0.4750 -6.6332 0.6379 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5141 28 1 1.6583 2.1316 0.0004 29 1 4.2266 2.7324 2.1395 30 1 4.5053 4.2491 1.2502 31 1 2.8901 3.5017 1.2506 32 1 6.1005 1.6555 -0.8920 33 1 6.3806 3.1708 -0.0005 34 1 6.1019 1.6539 0.8879 35 1 2.8890 3.5034 -1.2479 36 1 4.5043 4.2508 -1.2478 37 1 4.2248 2.7353 -2.1390 38 1 5.3552 0.0043 -0.0024 39 1 4.1315 -2.1311 0.0089 40 1 1.9581 -4.1834 -1.9128 41 1 3.4262 -3.2058 -1.6732 42 1 3.3971 -4.9096 -1.1582 43 1 1.9918 -5.6186 0.7269 44 1 0.5345 -4.8098 0.1024 45 1 -0.6802 -5.4525 4.5963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695844671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:40 Heat of formation + Delta-G solvation = -59.815944 kcal Electronic energy + Delta-G solvation = -21854.813315 eV Core-core repulsion = 18835.860165 eV Total energy + Delta-G solvation = -3018.953150 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.40504 -39.58152 -36.93240 -35.25286 -33.80924 -33.18686 -30.18449 -29.83017 -28.72974 -28.03267 -27.04671 -25.10697 -23.92702 -22.81811 -21.38193 -19.71308 -19.07395 -18.83272 -17.09683 -16.55480 -16.39132 -16.02263 -15.64366 -15.10740 -14.98065 -14.65264 -14.45533 -14.34356 -14.12655 -13.85556 -13.64341 -13.57615 -13.46170 -13.24779 -12.96076 -12.86784 -12.70259 -12.53818 -12.50153 -12.45884 -12.08690 -11.97879 -11.74914 -11.62617 -11.49365 -11.41243 -11.16961 -11.15685 -10.78088 -9.67501 -8.78927 -8.28966 -6.33098 0.44324 0.57341 1.34465 1.37784 1.49286 2.35545 2.48674 2.85234 3.07279 3.73815 3.83407 3.91967 4.00979 4.15442 4.18342 4.19189 4.34111 4.40326 4.42607 4.54687 4.66255 4.72432 4.79678 4.83332 4.84325 4.85243 4.92911 4.95628 4.99839 5.04542 5.08136 5.08882 5.12765 5.19454 5.25735 5.32519 5.38605 5.42306 5.51142 5.56391 5.60909 5.64017 5.77890 6.02975 6.24565 6.68461 6.76584 7.29411 8.88567 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.026393 B = 0.004135 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.627684 B = 6769.758430 C = 7008.182191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.142 4.142 3 C -0.079 4.079 4 C -0.114 4.114 5 C -0.022 4.022 6 C -0.139 4.139 7 C -0.143 4.143 8 C -0.135 4.135 9 C -0.091 4.091 10 C -0.218 4.218 11 C 0.107 3.893 12 O -0.318 6.318 13 C 0.095 3.905 14 H 0.057 0.943 15 C -0.167 4.167 16 C -0.009 4.009 17 C -0.522 4.522 18 H 0.021 0.979 19 C 0.003 3.997 20 N -0.953 5.953 21 Si 0.952 3.048 22 H -0.260 1.260 23 H -0.285 1.285 24 H -0.246 1.246 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.143 0.857 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.050 0.950 44 H 0.025 0.975 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.289 14.187 -12.843 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.143 4.143 3 C -0.097 4.097 4 C -0.114 4.114 5 C -0.022 4.022 6 C -0.196 4.196 7 C -0.200 4.200 8 C -0.192 4.192 9 C -0.108 4.108 10 C -0.237 4.237 11 C 0.061 3.939 12 O -0.232 6.232 13 C 0.039 3.961 14 H 0.075 0.925 15 C -0.224 4.224 16 C -0.046 4.046 17 C -0.560 4.560 18 H 0.040 0.960 19 C -0.193 4.193 20 N -0.594 5.594 21 Si 0.775 3.225 22 H -0.185 1.185 23 H -0.211 1.211 24 H -0.169 1.169 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.161 0.839 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.163 0.837 39 H 0.148 0.852 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.068 0.932 44 H 0.044 0.956 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.988 14.081 -12.722 21.445 hybrid contribution -0.459 -1.051 0.560 1.276 sum 9.528 13.030 -12.162 20.211 Atomic orbital electron populations 1.20528 0.90622 1.02699 1.01634 1.19555 0.96993 0.90945 1.06814 1.20842 0.93958 0.96286 0.98611 1.19945 0.93248 0.95277 1.02925 1.19452 0.95043 0.91020 0.96697 1.21901 1.01737 0.99806 0.96131 1.21957 0.93816 1.02397 1.01857 1.21870 1.01749 0.99677 0.95903 1.21180 1.00707 0.90811 0.98134 1.21462 0.92769 1.00330 1.09124 1.19349 0.91511 0.86413 0.96586 1.86141 1.37252 1.12826 1.86998 1.22429 0.93630 0.83083 0.96913 0.92538 1.22329 1.01876 1.02723 0.95515 1.19681 0.96236 0.94312 0.94385 1.21259 1.31317 1.04793 0.98605 0.96012 1.26026 0.95678 1.02596 0.95007 1.70083 1.38343 1.39326 1.11644 0.85633 0.77997 0.78823 0.80041 1.18487 1.21109 1.16934 0.92878 0.89296 0.92934 0.83884 0.93737 0.90709 0.92609 0.92121 0.90912 0.92828 0.92524 0.90884 0.92959 0.83691 0.85210 0.91818 0.91462 0.89348 0.93156 0.95647 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.24 9.79 71.24 0.70 -2.54 16 2 C -0.14 -4.96 5.89 -19.77 -0.12 -5.08 16 3 C -0.08 -2.22 8.36 22.25 0.19 -2.03 16 4 C -0.11 -2.91 4.76 -19.85 -0.09 -3.00 16 5 C -0.02 -0.41 0.85 -52.93 -0.05 -0.46 16 6 C -0.14 -2.46 8.29 71.98 0.60 -1.86 16 7 C -0.14 -2.28 7.13 71.98 0.51 -1.77 16 8 C -0.13 -2.11 8.28 71.98 0.60 -1.51 16 9 C -0.09 -2.51 8.97 22.26 0.20 -2.31 16 10 C -0.22 -7.34 8.24 22.37 0.18 -7.16 16 11 C 0.11 4.18 6.57 22.51 0.15 4.33 16 12 O -0.32 -14.16 8.60 -92.46 -0.80 -14.96 16 13 C 0.10 3.93 2.17 30.60 0.07 4.00 16 14 H 0.06 2.38 6.32 -2.39 -0.02 2.37 16 15 C -0.17 -5.18 9.17 71.98 0.66 -4.52 16 16 C -0.01 -0.43 3.75 29.85 0.11 -0.32 16 17 C -0.52 -31.25 9.43 25.60 0.24 -31.01 16 18 H 0.02 1.47 7.99 -2.91 -0.02 1.45 16 19 C 0.00 0.19 5.47 84.65 0.46 0.65 16 20 N -0.95 -61.53 13.96 21.45 0.30 -61.23 16 21 Si 0.95 44.72 27.47 68.60 1.88 46.60 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 23 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 25 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.09 2.25 8.09 -2.39 -0.02 2.23 16 27 H 0.05 1.89 7.53 -2.38 -0.02 1.88 16 28 H 0.14 3.24 7.09 -2.91 -0.02 3.22 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 0.99 7.38 -2.39 -0.02 0.98 16 32 H 0.06 0.94 7.51 -2.39 -0.02 0.92 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 0.91 7.51 -2.39 -0.02 0.90 16 35 H 0.06 0.88 7.38 -2.39 -0.02 0.87 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.15 3.23 5.89 -2.91 -0.02 3.22 16 39 H 0.13 4.16 5.43 -2.91 -0.02 4.14 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.07 1.88 6.90 -2.39 -0.02 1.86 16 42 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 44 H 0.03 1.22 7.19 -2.39 -0.02 1.20 16 45 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -71.05 351.14 6.68 -64.36 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.89 Total: 19.82 kcal Atomic # 6 Polarization: -59.01 SS G_CDS: 4.41 Total: -54.60 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.30 Total: -61.23 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.80 Total: -14.96 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -71.05 6.68 -64.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.548 kcal (2) G-P(sol) polarization free energy of solvation -71.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds