Wall clock time and date at job start Thu Apr 9 2020 14:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38168 * 120.02805 * 2 1 4 4 C 1.38241 * 120.05497 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.94371 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47040 * 59.99317 * 5 4 3 7 7 C 1.52993 * 109.47112 * 180.02562 * 5 4 3 8 8 C 1.53002 * 109.46598 * 299.99994 * 5 4 3 9 9 C 1.38286 * 120.11719 * 359.97438 * 4 3 2 10 10 C 1.38125 * 120.05220 * 0.02562 * 9 4 3 11 11 C 1.38712 * 120.03269 * 180.02562 * 2 1 3 12 12 O 1.35903 * 120.05327 * 359.95652 * 11 2 1 13 13 C 1.42897 * 117.00373 * 174.60388 * 12 11 2 14 14 H 1.08995 * 109.46968 * 324.87664 * 13 12 11 15 15 C 1.53005 * 109.46826 * 84.87223 * 13 12 11 16 16 C 1.52998 * 109.47437 * 204.87099 * 13 12 11 17 17 C 1.50704 * 109.46734 * 64.99809 * 16 13 12 18 18 H 1.07999 * 119.99887 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99680 * 179.97438 * 17 16 13 20 20 N 1.31510 * 120.00201 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99786 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47034 * 60.00042 * 21 19 17 23 23 H 1.48501 * 109.47098 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46789 * 300.00428 * 21 19 17 25 25 H 1.08999 * 109.46894 * 269.97192 * 1 2 3 26 26 H 1.08990 * 109.47338 * 29.97390 * 1 2 3 27 27 H 1.09004 * 109.47132 * 149.97951 * 1 2 3 28 28 H 1.08004 * 119.97042 * 0.02562 * 3 2 1 29 29 H 1.09010 * 109.46845 * 60.00776 * 6 5 4 30 30 H 1.09001 * 109.47094 * 179.97438 * 6 5 4 31 31 H 1.08994 * 109.47786 * 300.00359 * 6 5 4 32 32 H 1.08999 * 109.47545 * 60.00077 * 7 5 4 33 33 H 1.09008 * 109.46900 * 179.97438 * 7 5 4 34 34 H 1.08996 * 109.47393 * 299.99456 * 7 5 4 35 35 H 1.08996 * 109.47726 * 59.99866 * 8 5 4 36 36 H 1.09000 * 109.46907 * 180.02562 * 8 5 4 37 37 H 1.08999 * 109.47256 * 299.99431 * 8 5 4 38 38 H 1.08001 * 119.97694 * 180.02562 * 9 4 3 39 39 H 1.08001 * 120.02628 * 180.27340 * 10 9 4 40 40 H 1.09006 * 109.46765 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.47343 * 299.99681 * 15 13 12 42 42 H 1.08997 * 109.47160 * 60.00968 * 15 13 12 43 43 H 1.08996 * 109.47374 * 184.99428 * 16 13 12 44 44 H 1.08994 * 109.47240 * 305.00077 * 16 13 12 45 45 H 0.97002 * 120.00022 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 -0.0005 5 6 4.3324 2.5031 0.0001 6 6 3.9620 3.3041 1.2499 7 6 5.8370 2.2258 -0.0014 8 6 3.9611 3.3056 -1.2486 9 6 4.2752 0.0010 -0.0005 10 6 3.5887 -1.1975 -0.0005 11 6 2.2012 -1.2009 -0.0005 12 8 1.5235 -2.3789 -0.0002 13 6 2.2985 -3.5734 -0.1205 14 1 3.1497 -3.3896 -0.7760 15 6 2.8009 -3.9966 1.2613 16 6 1.4311 -4.6869 -0.7108 17 6 1.0373 -4.3235 -2.1194 18 1 1.3726 -3.3917 -2.5505 19 6 0.2499 -5.1811 -2.8580 20 7 -0.1579 -6.3159 -2.3332 21 14 -0.2376 -4.7310 -4.6043 22 1 0.9840 -4.5633 -5.4316 23 1 -1.0797 -5.8117 -5.1773 24 1 -1.0053 -3.4598 -4.5918 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6583 2.1316 0.0004 29 1 4.2266 2.7323 2.1395 30 1 4.5060 4.2487 1.2505 31 1 2.8901 3.5017 1.2504 32 1 6.1006 1.6554 -0.8920 33 1 6.3807 3.1706 -0.0014 34 1 6.1019 1.6539 0.8879 35 1 2.8892 3.5032 -1.2481 36 1 4.5050 4.2502 -1.2484 37 1 4.2250 2.7351 -2.1390 38 1 5.3552 0.0042 -0.0005 39 1 4.1315 -2.1312 0.0039 40 1 3.3925 -4.9075 1.1695 41 1 3.4189 -3.2034 1.6819 42 1 1.9497 -4.1804 1.9168 43 1 1.9944 -5.6199 -0.7204 44 1 0.5346 -4.8099 -0.1032 45 1 -0.7122 -6.9190 -2.8528 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695844672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:43 Heat of formation + Delta-G solvation = -48.011181 kcal Electronic energy + Delta-G solvation = -21849.878646 eV Core-core repulsion = 18831.437389 eV Total energy + Delta-G solvation = -3018.441257 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.12483 -38.30506 -35.74956 -33.34084 -32.38928 -31.33241 -29.00052 -27.88159 -27.39186 -27.30223 -25.92259 -23.52244 -22.58202 -21.63185 -19.85689 -18.67699 -17.54242 -16.35750 -15.69605 -15.50393 -14.64478 -14.58133 -14.40238 -14.18609 -13.71213 -13.33220 -13.12750 -12.89299 -12.72048 -12.46954 -12.45484 -11.95011 -11.89279 -11.77566 -11.75537 -11.69318 -11.56153 -11.38099 -11.19401 -10.97161 -10.77869 -10.70703 -10.50782 -10.45066 -10.25481 -9.89967 -9.35192 -9.10053 -8.45803 -8.37640 -7.47032 -6.00881 -4.02123 1.66565 1.81943 3.34831 3.38566 3.42375 3.97679 4.08067 4.46780 4.64723 4.74897 4.96420 5.15673 5.24842 5.29349 5.36210 5.47349 5.53204 5.53887 5.61479 5.68357 5.72921 5.77520 5.78628 5.79589 5.87050 5.89952 5.97501 6.03915 6.04793 6.08136 6.20875 6.24592 6.25643 6.26867 6.56064 6.62842 6.66633 6.81711 6.88164 6.92725 7.18234 7.52225 7.61225 7.95722 8.21545 8.38391 9.01403 9.61138 11.10548 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.021308 B = 0.004385 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.729145 B = 6384.146743 C = 6803.313370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.125 4.125 3 C -0.080 4.080 4 C -0.124 4.124 5 C -0.021 4.021 6 C -0.137 4.137 7 C -0.143 4.143 8 C -0.138 4.138 9 C -0.087 4.087 10 C -0.211 4.211 11 C 0.147 3.853 12 O -0.288 6.288 13 C 0.086 3.914 14 H 0.061 0.939 15 C -0.177 4.177 16 C 0.026 3.974 17 C -0.513 4.513 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.119 0.881 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.037 0.963 44 H 0.028 0.972 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 16.683 6.602 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.125 4.125 3 C -0.098 4.098 4 C -0.124 4.124 5 C -0.021 4.021 6 C -0.194 4.194 7 C -0.200 4.200 8 C -0.195 4.195 9 C -0.105 4.105 10 C -0.230 4.230 11 C 0.099 3.901 12 O -0.201 6.201 13 C 0.031 3.969 14 H 0.079 0.921 15 C -0.234 4.234 16 C -0.010 4.010 17 C -0.551 4.551 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.537 5.537 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.137 0.863 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.595 16.460 6.577 19.699 hybrid contribution -0.042 -0.005 -1.002 1.003 sum 8.553 16.455 5.575 19.365 Atomic orbital electron populations 1.20584 0.90807 1.02913 1.01787 1.19239 0.96414 0.90455 1.06437 1.20557 0.93286 0.96386 0.99557 1.19483 0.93313 0.93901 1.05732 1.19351 0.94583 0.92563 0.95647 1.21883 1.01391 0.99124 0.97014 1.21946 0.94704 1.01349 1.01984 1.21891 1.01412 0.99122 0.97098 1.20853 0.99416 0.91350 0.98929 1.21336 0.93524 0.99138 1.08961 1.19045 0.90382 0.86997 0.93635 1.86257 1.36154 1.11873 1.85790 1.22844 0.95214 0.84095 0.94766 0.92093 1.22409 1.01405 1.01184 0.98438 1.19250 0.95040 0.90818 0.95924 1.21082 1.31470 1.04557 0.98034 0.92689 1.24964 0.95998 0.94989 0.98300 1.69938 1.36222 1.10230 1.37276 0.86658 0.78582 0.78071 0.84749 1.20277 1.21270 1.20164 0.91979 0.92436 0.90303 0.86321 0.92627 0.92823 0.92544 0.92310 0.92774 0.92385 0.92526 0.92821 0.92512 0.86152 0.85408 0.91497 0.93324 0.91980 0.94485 0.95336 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.64 9.79 36.00 0.35 -1.28 16 2 C -0.12 -2.10 5.89 -104.47 -0.62 -2.72 16 3 C -0.08 -1.14 8.36 -39.61 -0.33 -1.47 16 4 C -0.12 -1.66 4.76 -104.60 -0.50 -2.16 16 5 C -0.02 -0.22 0.85 -155.66 -0.13 -0.36 16 6 C -0.14 -1.28 8.29 37.16 0.31 -0.97 16 7 C -0.14 -1.33 7.13 37.15 0.26 -1.07 16 8 C -0.14 -1.36 8.28 37.16 0.31 -1.05 16 9 C -0.09 -1.25 8.97 -39.61 -0.36 -1.61 16 10 C -0.21 -3.52 8.24 -39.43 -0.32 -3.84 16 11 C 0.15 2.75 6.57 -39.22 -0.26 2.50 16 12 O -0.29 -6.21 8.60 -19.43 -0.17 -6.37 16 13 C 0.09 1.82 2.17 -26.73 -0.06 1.76 16 14 H 0.06 1.26 6.32 -51.93 -0.33 0.93 16 15 C -0.18 -3.06 9.17 37.16 0.34 -2.72 16 16 C 0.03 0.68 4.68 -27.88 -0.13 0.55 16 17 C -0.51 -14.58 8.88 -34.44 -0.31 -14.89 16 18 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 21 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 27 H 0.08 1.44 7.53 -51.93 -0.39 1.05 16 28 H 0.12 1.44 7.09 -52.48 -0.37 1.07 16 29 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.52 7.38 -51.93 -0.38 0.14 16 32 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 33 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 35 H 0.06 0.55 7.38 -51.93 -0.38 0.17 16 36 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.12 1.45 5.89 -52.49 -0.31 1.15 16 39 H 0.13 2.06 5.42 -52.49 -0.28 1.77 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.75 6.90 -51.93 -0.36 0.40 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 354.74 15.07 5.35 5.35 Total: -1.00 -30.16 354.74 -8.42 -38.58 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.78 Total: -0.66 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: -1.53 Total: -27.76 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.17 Total: -6.37 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.16 -8.42 -38.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.429 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds