Wall clock time and date at job start Thu Apr 9 2020 14:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38168 * 120.02805 * 2 1 4 4 C 1.38241 * 120.05497 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.94371 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47040 * 59.99317 * 5 4 3 7 7 C 1.52993 * 109.47112 * 180.02562 * 5 4 3 8 8 C 1.53002 * 109.46598 * 299.99994 * 5 4 3 9 9 C 1.38286 * 120.11719 * 359.97438 * 4 3 2 10 10 C 1.38125 * 120.05220 * 0.02562 * 9 4 3 11 11 C 1.38712 * 120.03269 * 180.02562 * 2 1 3 12 12 O 1.35903 * 120.05327 * 359.95652 * 11 2 1 13 13 C 1.42897 * 117.00373 * 174.60388 * 12 11 2 14 14 H 1.08995 * 109.46968 * 324.87664 * 13 12 11 15 15 C 1.53005 * 109.46826 * 84.87223 * 13 12 11 16 16 C 1.52998 * 109.47437 * 204.87099 * 13 12 11 17 17 C 1.50704 * 109.46734 * 64.99809 * 16 13 12 18 18 H 1.07999 * 119.99887 * 0.02562 * 17 16 13 19 19 C 1.37879 * 119.99680 * 179.97438 * 17 16 13 20 20 N 1.31510 * 120.00201 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99786 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47034 * 60.00042 * 21 19 17 23 23 H 1.48501 * 109.47098 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46789 * 300.00428 * 21 19 17 25 25 H 1.08999 * 109.46894 * 269.97192 * 1 2 3 26 26 H 1.08990 * 109.47338 * 29.97390 * 1 2 3 27 27 H 1.09004 * 109.47132 * 149.97951 * 1 2 3 28 28 H 1.08004 * 119.97042 * 0.02562 * 3 2 1 29 29 H 1.09010 * 109.46845 * 60.00776 * 6 5 4 30 30 H 1.09001 * 109.47094 * 179.97438 * 6 5 4 31 31 H 1.08994 * 109.47786 * 300.00359 * 6 5 4 32 32 H 1.08999 * 109.47545 * 60.00077 * 7 5 4 33 33 H 1.09008 * 109.46900 * 179.97438 * 7 5 4 34 34 H 1.08996 * 109.47393 * 299.99456 * 7 5 4 35 35 H 1.08996 * 109.47726 * 59.99866 * 8 5 4 36 36 H 1.09000 * 109.46907 * 180.02562 * 8 5 4 37 37 H 1.08999 * 109.47256 * 299.99431 * 8 5 4 38 38 H 1.08001 * 119.97694 * 180.02562 * 9 4 3 39 39 H 1.08001 * 120.02628 * 180.27340 * 10 9 4 40 40 H 1.09006 * 109.46765 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.47343 * 299.99681 * 15 13 12 42 42 H 1.08997 * 109.47160 * 60.00968 * 15 13 12 43 43 H 1.08996 * 109.47374 * 184.99428 * 16 13 12 44 44 H 1.08994 * 109.47240 * 305.00077 * 16 13 12 45 45 H 0.97002 * 120.00022 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 -0.0005 5 6 4.3324 2.5031 0.0001 6 6 3.9620 3.3041 1.2499 7 6 5.8370 2.2258 -0.0014 8 6 3.9611 3.3056 -1.2486 9 6 4.2752 0.0010 -0.0005 10 6 3.5887 -1.1975 -0.0005 11 6 2.2012 -1.2009 -0.0005 12 8 1.5235 -2.3789 -0.0002 13 6 2.2985 -3.5734 -0.1205 14 1 3.1497 -3.3896 -0.7760 15 6 2.8009 -3.9966 1.2613 16 6 1.4311 -4.6869 -0.7108 17 6 1.0373 -4.3235 -2.1194 18 1 1.3726 -3.3917 -2.5505 19 6 0.2499 -5.1811 -2.8580 20 7 -0.1579 -6.3159 -2.3332 21 14 -0.2376 -4.7310 -4.6043 22 1 0.9840 -4.5633 -5.4316 23 1 -1.0797 -5.8117 -5.1773 24 1 -1.0053 -3.4598 -4.5918 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8901 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6583 2.1316 0.0004 29 1 4.2266 2.7323 2.1395 30 1 4.5060 4.2487 1.2505 31 1 2.8901 3.5017 1.2504 32 1 6.1006 1.6554 -0.8920 33 1 6.3807 3.1706 -0.0014 34 1 6.1019 1.6539 0.8879 35 1 2.8892 3.5032 -1.2481 36 1 4.5050 4.2502 -1.2484 37 1 4.2250 2.7351 -2.1390 38 1 5.3552 0.0042 -0.0005 39 1 4.1315 -2.1312 0.0039 40 1 3.3925 -4.9075 1.1695 41 1 3.4189 -3.2034 1.6819 42 1 1.9497 -4.1804 1.9168 43 1 1.9944 -5.6199 -0.7204 44 1 0.5346 -4.8099 -0.1032 45 1 -0.7122 -6.9190 -2.8528 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695844672.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:42 Heat of formation + Delta-G solvation = -62.323269 kcal Electronic energy + Delta-G solvation = -21850.499265 eV Core-core repulsion = 18831.437389 eV Total energy + Delta-G solvation = -3019.061876 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.38930 -39.55961 -36.91134 -35.30802 -33.74247 -33.01907 -30.16559 -29.39695 -28.70327 -28.02455 -27.02983 -25.35111 -24.05881 -22.80150 -21.41113 -19.69220 -18.94237 -18.53284 -17.09017 -16.54058 -16.45761 -16.06999 -15.63482 -15.05170 -15.00175 -14.53579 -14.40255 -14.17762 -14.08804 -13.76287 -13.61860 -13.41367 -13.36217 -13.22641 -12.93705 -12.85308 -12.69799 -12.65022 -12.53666 -12.46631 -12.33928 -11.99881 -11.84716 -11.56858 -11.48339 -11.40051 -11.17637 -11.01723 -10.59963 -9.65864 -8.77632 -8.22489 -6.31544 0.45735 0.58908 1.36238 1.39131 1.47185 2.38623 2.51878 2.85673 3.12048 3.74817 3.85032 3.93642 4.05150 4.17841 4.19820 4.22552 4.36176 4.41720 4.44409 4.55853 4.67422 4.73962 4.81838 4.84409 4.85457 4.86032 4.96445 4.99065 5.02730 5.09199 5.09687 5.13849 5.15872 5.26721 5.32895 5.39639 5.44246 5.47623 5.51906 5.58443 5.65923 5.74613 5.79240 6.04622 6.18040 6.74639 6.80689 7.35844 8.89123 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.021308 B = 0.004385 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.729145 B = 6384.146743 C = 6803.313370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.141 4.141 3 C -0.078 4.078 4 C -0.113 4.113 5 C -0.022 4.022 6 C -0.136 4.136 7 C -0.144 4.144 8 C -0.138 4.138 9 C -0.090 4.090 10 C -0.218 4.218 11 C 0.106 3.894 12 O -0.317 6.317 13 C 0.095 3.905 14 H 0.061 0.939 15 C -0.166 4.166 16 C 0.031 3.969 17 C -0.531 4.531 18 H 0.048 0.952 19 C 0.006 3.994 20 N -0.930 5.930 21 Si 0.958 3.042 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.273 1.273 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.043 0.957 28 H 0.144 0.856 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.145 0.855 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.024 0.976 44 H -0.002 1.002 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.312 19.463 6.340 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.142 4.142 3 C -0.096 4.096 4 C -0.114 4.114 5 C -0.022 4.022 6 C -0.193 4.193 7 C -0.201 4.201 8 C -0.195 4.195 9 C -0.108 4.108 10 C -0.237 4.237 11 C 0.061 3.939 12 O -0.231 6.231 13 C 0.039 3.961 14 H 0.079 0.921 15 C -0.223 4.223 16 C -0.006 4.006 17 C -0.569 4.569 18 H 0.066 0.934 19 C -0.192 4.192 20 N -0.571 5.571 21 Si 0.782 3.218 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.198 1.198 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.162 0.838 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.162 0.838 39 H 0.146 0.854 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.016 0.984 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.002 19.253 6.322 22.599 hybrid contribution -0.436 -0.757 -0.894 1.250 sum 9.566 18.496 5.428 21.519 Atomic orbital electron populations 1.20550 0.90590 1.02311 1.02255 1.19536 0.96977 0.90815 1.06824 1.20834 0.93886 0.96286 0.98577 1.19933 0.93279 0.95189 1.02972 1.19447 0.94986 0.91053 0.96698 1.21876 1.01762 0.99691 0.95950 1.21958 0.93891 1.02363 1.01855 1.21896 1.01764 0.99749 0.96106 1.21167 1.00671 0.90797 0.98134 1.21450 0.92816 1.00257 1.09170 1.19384 0.91501 0.86435 0.96611 1.86170 1.37170 1.12750 1.86989 1.22530 0.93795 0.83198 0.96576 0.92128 1.22295 1.01523 1.02406 0.96069 1.19089 0.94412 0.92326 0.94811 1.21388 1.31757 1.04306 0.99422 0.93398 1.25827 0.95866 0.94839 1.02653 1.70052 1.36822 1.11196 1.38981 0.85615 0.78598 0.77953 0.79616 1.19170 1.20281 1.19820 0.91026 0.89946 0.93828 0.83830 0.93110 0.90926 0.92474 0.92696 0.90977 0.92276 0.92506 0.90835 0.93553 0.83783 0.85413 0.90135 0.91247 0.92559 0.95814 0.98378 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.17 9.79 71.23 0.70 -2.47 16 2 C -0.14 -4.72 5.89 -19.77 -0.12 -4.83 16 3 C -0.08 -2.08 8.36 22.25 0.19 -1.90 16 4 C -0.11 -2.78 4.76 -19.85 -0.09 -2.87 16 5 C -0.02 -0.39 0.85 -52.93 -0.05 -0.43 16 6 C -0.14 -2.06 8.29 71.98 0.60 -1.46 16 7 C -0.14 -2.19 7.13 71.98 0.51 -1.68 16 8 C -0.14 -2.26 8.28 71.98 0.60 -1.66 16 9 C -0.09 -2.42 8.97 22.25 0.20 -2.22 16 10 C -0.22 -7.21 8.24 22.37 0.18 -7.03 16 11 C 0.11 4.07 6.57 22.51 0.15 4.22 16 12 O -0.32 -14.25 8.60 -92.45 -0.80 -15.05 16 13 C 0.09 4.13 2.17 30.60 0.07 4.20 16 14 H 0.06 2.59 6.32 -2.39 -0.02 2.58 16 15 C -0.17 -5.79 9.17 71.98 0.66 -5.13 16 16 C 0.03 1.65 4.68 29.85 0.14 1.79 16 17 C -0.53 -31.24 8.88 25.60 0.23 -31.01 16 18 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 19 C 0.01 0.36 5.46 84.66 0.46 0.82 16 20 N -0.93 -57.08 13.29 21.45 0.28 -56.79 16 21 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 25 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.08 2.11 8.08 -2.39 -0.02 2.09 16 27 H 0.04 1.66 7.53 -2.38 -0.02 1.64 16 28 H 0.14 3.05 7.09 -2.91 -0.02 3.03 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.81 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.86 7.38 -2.39 -0.02 0.84 16 32 H 0.05 0.88 7.51 -2.39 -0.02 0.87 16 33 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.06 0.89 7.51 -2.39 -0.02 0.88 16 35 H 0.06 0.92 7.38 -2.39 -0.02 0.91 16 36 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.14 3.12 5.89 -2.91 -0.02 3.10 16 39 H 0.13 4.10 5.42 -2.91 -0.02 4.08 16 40 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 41 H 0.07 2.12 6.90 -2.39 -0.02 2.11 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -66.97 354.74 6.88 -60.09 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.94 Total: 15.73 kcal Atomic # 6 Polarization: -56.10 SS G_CDS: 4.42 Total: -51.67 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: 0.28 Total: -56.79 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.80 Total: -15.05 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -66.97 6.88 -60.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695844672.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.234 kcal (2) G-P(sol) polarization free energy of solvation -66.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds