Wall clock time and date at job start Thu Apr 9 2020 14:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46859 * 2 1 4 4 C 1.53005 * 109.46993 * 240.00331 * 2 1 3 5 5 C 1.50698 * 109.47107 * 174.99644 * 4 2 1 6 6 H 1.07994 * 119.99872 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99751 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00214 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99630 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47293 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46976 * 120.00172 * 9 7 5 12 12 H 1.48496 * 109.47209 * 240.00336 * 9 7 5 13 13 O 1.42896 * 109.47265 * 120.00487 * 2 1 3 14 14 C 1.35911 * 116.99787 * 274.94135 * 13 2 1 15 15 C 1.39138 * 120.47528 * 5.08530 * 14 13 2 16 16 C 1.38540 * 118.37627 * 179.75900 * 15 14 13 17 17 C 1.38253 * 119.21813 * 0.48848 * 16 15 14 18 18 C 1.50703 * 119.55556 * 179.74680 * 17 16 15 19 19 N 1.46902 * 109.46793 * 95.02233 * 18 17 16 20 20 C 1.46902 * 110.99506 * 180.02562 * 19 18 17 21 21 C 1.53009 * 117.49634 * 223.74903 * 20 19 18 22 22 C 1.53000 * 117.49690 * 155.09242 * 20 19 18 23 23 N 1.31847 * 120.88718 * 359.77400 * 17 16 15 24 24 C 1.31833 * 121.78283 * 359.97438 * 23 17 16 25 25 H 1.08997 * 109.46895 * 299.99484 * 1 2 3 26 26 H 1.08993 * 109.47511 * 59.99825 * 1 2 3 27 27 H 1.08997 * 109.46859 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47160 * 295.00084 * 4 2 1 29 29 H 1.08997 * 109.46718 * 54.99577 * 4 2 1 30 30 H 0.96993 * 120.00513 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.81140 * 359.97438 * 15 14 13 32 32 H 1.08001 * 120.38879 * 180.25952 * 16 15 14 33 33 H 1.09000 * 109.47165 * 215.02215 * 18 17 16 34 34 H 1.09001 * 109.46896 * 335.02507 * 18 17 16 35 35 H 1.00900 * 110.99964 * 56.04965 * 19 18 17 36 36 H 1.08996 * 115.55516 * 9.41260 * 20 19 18 37 37 H 1.08999 * 117.49404 * 359.97438 * 21 20 19 38 38 H 1.08993 * 117.49793 * 145.02079 * 21 20 19 39 39 H 1.09006 * 117.49913 * 214.97704 * 22 20 19 40 40 H 1.09004 * 117.50004 * 359.97147 * 22 20 19 41 41 H 1.08000 * 119.66410 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3129 6 1 4.0789 -0.0861 -0.5394 7 6 4.2303 -1.1934 -2.3581 8 7 3.5764 -1.8376 -3.2997 9 14 6.0921 -1.0621 -2.4364 10 1 6.5838 -0.2927 -1.2653 11 1 6.6854 -2.4233 -2.4183 12 1 6.4870 -0.3665 -3.6875 13 8 2.0064 -0.6737 1.1667 14 6 2.1137 0.0628 2.3039 15 6 1.6708 1.3814 2.3350 16 6 1.7965 2.0905 3.5185 17 6 2.3629 1.4730 4.6182 18 6 2.5087 2.2391 5.9078 19 7 1.3590 1.9568 6.7776 20 6 1.4669 2.6887 8.0467 21 6 1.1327 1.9280 9.3316 22 6 0.1700 2.9926 8.7995 23 7 2.7776 0.2232 4.5538 24 6 2.6716 -0.4875 3.4484 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7516 -1.7715 -1.2057 29 1 1.6053 -0.2616 -2.1370 30 1 4.0606 -2.2443 -4.0351 31 1 1.2363 1.8399 1.4590 32 1 1.4596 3.1147 3.5802 33 1 3.4272 1.9346 6.4095 34 1 2.5485 3.3071 5.6935 35 1 1.2622 0.9655 6.9387 36 1 2.2626 3.4321 8.0946 37 1 0.8324 0.8847 9.2350 38 1 1.7082 2.1713 10.2246 39 1 0.1125 3.9358 9.3428 40 1 -0.7634 2.6498 8.3528 41 1 3.0230 -1.5086 3.4337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695889420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:45 Heat of formation + Delta-G solvation = 13.172491 kcal Electronic energy + Delta-G solvation = -20506.521438 eV Core-core repulsion = 17387.192961 eV Total energy + Delta-G solvation = -3119.328477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41139 -38.43520 -37.74235 -34.11084 -33.38504 -32.00176 -31.68005 -29.70285 -27.55158 -25.48009 -23.52090 -23.36910 -22.62241 -21.90114 -21.44204 -19.98698 -17.81939 -16.67825 -16.46910 -16.34474 -16.15924 -15.04453 -14.80154 -14.60107 -14.34311 -14.11872 -13.58188 -13.40301 -13.27593 -12.77011 -12.45888 -12.29641 -11.99186 -11.82442 -11.73661 -11.60637 -11.47069 -11.21693 -11.02605 -10.81340 -10.62382 -10.49436 -10.18769 -9.60751 -9.40491 -9.36502 -9.16338 -8.48649 -8.43798 -7.90927 -6.06605 -4.08434 1.36675 1.48029 3.28852 3.36703 3.41622 3.53497 3.71290 3.74258 4.18143 4.42275 4.54006 4.64607 4.69024 4.79088 4.89315 4.99323 5.21011 5.24014 5.30824 5.38715 5.41266 5.48794 5.58703 5.60366 5.66302 5.68707 5.84019 5.88909 5.95242 6.08847 6.24506 6.35596 6.54173 6.64444 6.66552 6.80596 7.10040 7.40417 7.50752 7.89502 7.92749 8.19173 8.29763 8.95257 9.55474 11.04753 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030484 B = 0.003196 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.305201 B = 8759.404399 C = 9300.235223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.085 3.915 3 H 0.063 0.937 4 C 0.025 3.975 5 C -0.515 4.515 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 O -0.283 6.283 14 C 0.109 3.891 15 C -0.177 4.177 16 C -0.106 4.106 17 C 0.061 3.939 18 C 0.123 3.877 19 N -0.654 5.654 20 C 0.023 3.977 21 C -0.208 4.208 22 C -0.172 4.172 23 N -0.445 5.445 24 C 0.062 3.938 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.040 0.960 30 H 0.261 0.739 31 H 0.141 0.859 32 H 0.131 0.869 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.349 0.651 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.794 9.132 18.916 21.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.029 3.971 3 H 0.081 0.919 4 C -0.012 4.012 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.210 1.210 13 O -0.193 6.193 14 C 0.059 3.941 15 C -0.203 4.203 16 C -0.127 4.127 17 C -0.076 4.076 18 C -0.006 4.006 19 N -0.285 5.285 20 C -0.087 4.087 21 C -0.247 4.247 22 C -0.211 4.211 23 N -0.155 5.155 24 C -0.097 4.097 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.159 0.841 32 H 0.149 0.851 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.168 0.832 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.751 8.917 19.105 21.854 hybrid contribution 1.180 0.080 -0.614 1.332 sum -4.572 8.998 18.491 21.066 Atomic orbital electron populations 1.22412 0.96786 1.02794 1.01518 1.22946 0.91954 0.97135 0.85022 0.91947 1.19284 0.96671 0.96580 0.88627 1.21136 0.91609 1.34618 1.08005 0.92602 1.24978 0.98543 0.95165 0.95634 1.69947 1.35551 1.35882 1.12088 0.86520 0.85643 0.77902 0.77898 1.19729 1.20891 1.21001 1.86311 1.79395 1.37662 1.15981 1.20382 0.93549 0.90984 0.89232 1.21829 1.04294 0.94478 0.99709 1.21678 0.97841 1.00729 0.92434 1.20691 1.00280 0.91371 0.95306 1.20644 0.91985 0.98616 0.89339 1.60273 1.41711 1.13927 1.12588 1.22413 0.99092 1.00703 0.86533 1.23439 1.04836 0.97946 0.98450 1.23129 0.95215 0.99674 1.03055 1.67381 1.14973 1.06772 1.26371 1.22089 1.00365 1.00741 0.86526 0.93366 0.91196 0.91745 0.95147 0.94228 0.92923 0.84110 0.85071 0.93360 0.89677 0.83161 0.87263 0.88681 0.88822 0.88809 0.88427 0.82072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 9.20 37.16 0.34 -2.56 16 2 C 0.08 1.70 2.17 -26.73 -0.06 1.64 16 3 H 0.06 1.21 6.32 -51.93 -0.33 0.88 16 4 C 0.03 0.63 4.68 -27.88 -0.13 0.50 16 5 C -0.52 -14.33 8.88 -34.44 -0.31 -14.64 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 O -0.28 -5.81 9.56 -19.46 -0.19 -6.00 16 14 C 0.11 1.93 6.62 -39.07 -0.26 1.67 16 15 C -0.18 -2.74 8.35 -39.14 -0.33 -3.07 16 16 C -0.11 -1.45 9.71 -39.46 -0.38 -1.83 16 17 C 0.06 0.85 6.29 -82.58 -0.52 0.33 16 18 C 0.12 1.35 5.84 -4.97 -0.03 1.32 16 19 N -0.65 -6.84 6.77 -107.98 -0.73 -7.58 16 20 C 0.02 0.20 6.31 -67.71 -0.43 -0.23 16 21 C -0.21 -1.58 10.23 -26.69 -0.27 -1.85 16 22 C -0.17 -1.35 10.46 -26.69 -0.28 -1.63 16 23 N -0.45 -6.98 10.27 -9.35 -0.10 -7.08 16 24 C 0.06 1.04 11.14 -17.38 -0.19 0.85 16 25 H 0.05 0.70 6.97 -51.93 -0.36 0.33 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.14 2.03 5.61 -52.49 -0.29 1.74 16 32 H 0.13 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.80 8.04 -51.93 -0.42 0.39 16 35 H 0.35 3.83 8.51 -39.29 -0.33 3.49 16 36 H 0.11 0.83 7.90 -51.93 -0.41 0.42 16 37 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.16 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 344.84 15.07 5.20 5.20 Total: -1.00 -30.11 344.84 -9.38 -39.48 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.34 Total: 2.91 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -2.94 Total: -17.95 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -0.09 Total: -40.30 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.19 Total: -6.00 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.11 -9.38 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.656 kcal (2) G-P(sol) polarization free energy of solvation -30.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds