Wall clock time and date at job start Thu Apr 9 2020 14:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46859 * 2 1 4 4 C 1.53005 * 109.46993 * 240.00331 * 2 1 3 5 5 C 1.50698 * 109.47107 * 174.99644 * 4 2 1 6 6 H 1.07994 * 119.99872 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99751 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00214 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99630 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47293 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46976 * 120.00172 * 9 7 5 12 12 H 1.48496 * 109.47209 * 240.00336 * 9 7 5 13 13 O 1.42896 * 109.47265 * 120.00487 * 2 1 3 14 14 C 1.35911 * 116.99787 * 274.94135 * 13 2 1 15 15 C 1.39138 * 120.47528 * 5.08530 * 14 13 2 16 16 C 1.38540 * 118.37627 * 179.75900 * 15 14 13 17 17 C 1.38253 * 119.21813 * 0.48848 * 16 15 14 18 18 C 1.50703 * 119.55556 * 179.74680 * 17 16 15 19 19 N 1.46902 * 109.46793 * 95.02233 * 18 17 16 20 20 C 1.46902 * 110.99506 * 180.02562 * 19 18 17 21 21 C 1.53009 * 117.49634 * 223.74903 * 20 19 18 22 22 C 1.53000 * 117.49690 * 155.09242 * 20 19 18 23 23 N 1.31847 * 120.88718 * 359.77400 * 17 16 15 24 24 C 1.31833 * 121.78283 * 359.97438 * 23 17 16 25 25 H 1.08997 * 109.46895 * 299.99484 * 1 2 3 26 26 H 1.08993 * 109.47511 * 59.99825 * 1 2 3 27 27 H 1.08997 * 109.46859 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47160 * 295.00084 * 4 2 1 29 29 H 1.08997 * 109.46718 * 54.99577 * 4 2 1 30 30 H 0.96993 * 120.00513 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.81140 * 359.97438 * 15 14 13 32 32 H 1.08001 * 120.38879 * 180.25952 * 16 15 14 33 33 H 1.09000 * 109.47165 * 215.02215 * 18 17 16 34 34 H 1.09001 * 109.46896 * 335.02507 * 18 17 16 35 35 H 1.00900 * 110.99964 * 56.04965 * 19 18 17 36 36 H 1.08996 * 115.55516 * 9.41260 * 20 19 18 37 37 H 1.08999 * 117.49404 * 359.97438 * 21 20 19 38 38 H 1.08993 * 117.49793 * 145.02079 * 21 20 19 39 39 H 1.09006 * 117.49913 * 214.97704 * 22 20 19 40 40 H 1.09004 * 117.50004 * 359.97147 * 22 20 19 41 41 H 1.08000 * 119.66410 * 179.97438 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3129 6 1 4.0789 -0.0861 -0.5394 7 6 4.2303 -1.1934 -2.3581 8 7 3.5764 -1.8376 -3.2997 9 14 6.0921 -1.0621 -2.4364 10 1 6.5838 -0.2927 -1.2653 11 1 6.6854 -2.4233 -2.4183 12 1 6.4870 -0.3665 -3.6875 13 8 2.0064 -0.6737 1.1667 14 6 2.1137 0.0628 2.3039 15 6 1.6708 1.3814 2.3350 16 6 1.7965 2.0905 3.5185 17 6 2.3629 1.4730 4.6182 18 6 2.5087 2.2391 5.9078 19 7 1.3590 1.9568 6.7776 20 6 1.4669 2.6887 8.0467 21 6 1.1327 1.9280 9.3316 22 6 0.1700 2.9926 8.7995 23 7 2.7776 0.2232 4.5538 24 6 2.6716 -0.4875 3.4484 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7516 -1.7715 -1.2057 29 1 1.6053 -0.2616 -2.1370 30 1 4.0606 -2.2443 -4.0351 31 1 1.2363 1.8399 1.4590 32 1 1.4596 3.1147 3.5802 33 1 3.4272 1.9346 6.4095 34 1 2.5485 3.3071 5.6935 35 1 1.2622 0.9655 6.9387 36 1 2.2626 3.4321 8.0946 37 1 0.8324 0.8847 9.2350 38 1 1.7082 2.1713 10.2246 39 1 0.1125 3.9358 9.3428 40 1 -0.7634 2.6498 8.3528 41 1 3.0230 -1.5086 3.4337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695889420.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:44 Heat of formation + Delta-G solvation = -5.551287 kcal Electronic energy + Delta-G solvation = -20507.333362 eV Core-core repulsion = 17387.192961 eV Total energy + Delta-G solvation = -3120.140401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66497 -39.66074 -38.58156 -35.62088 -34.71553 -33.41882 -33.17123 -30.82827 -29.41200 -26.53183 -25.25826 -24.69445 -23.24611 -23.15739 -22.10275 -21.47615 -19.20961 -18.54845 -17.83025 -17.39749 -16.98306 -16.54400 -16.22687 -15.93924 -15.47993 -15.17147 -14.88619 -14.63593 -14.38552 -14.03982 -13.78130 -13.68715 -13.35873 -13.24419 -13.21291 -12.78802 -12.70082 -12.59487 -12.34462 -12.31289 -11.91919 -11.76926 -11.36004 -11.23762 -11.15181 -10.66339 -10.63750 -10.53107 -9.33526 -9.11208 -8.23099 -6.31969 0.17999 0.26805 1.36500 1.38206 1.50346 2.31253 2.38494 2.65612 2.96144 3.11566 3.21044 3.51335 3.71666 3.79392 3.98023 4.04165 4.09542 4.14011 4.17498 4.22821 4.28808 4.42001 4.60284 4.64509 4.74594 4.79673 4.82835 4.83790 4.96115 5.09077 5.12709 5.17942 5.20579 5.30861 5.32657 5.42066 5.60770 5.74621 6.05547 6.15904 6.27348 6.51013 6.79922 6.98473 7.35795 8.88709 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030484 B = 0.003196 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.305201 B = 8759.404399 C = 9300.235223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 H 0.069 0.931 4 C 0.027 3.973 5 C -0.530 4.530 6 H 0.050 0.950 7 C 0.004 3.996 8 N -0.929 5.929 9 Si 0.958 3.042 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.274 1.274 13 O -0.312 6.312 14 C 0.079 3.921 15 C -0.175 4.175 16 C -0.102 4.102 17 C 0.066 3.934 18 C 0.127 3.873 19 N -0.661 5.661 20 C 0.013 3.987 21 C -0.205 4.205 22 C -0.171 4.171 23 N -0.456 5.456 24 C 0.049 3.951 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.000 1.000 29 H 0.028 0.972 30 H 0.265 0.735 31 H 0.152 0.848 32 H 0.166 0.834 33 H 0.048 0.952 34 H 0.107 0.893 35 H 0.342 0.658 36 H 0.122 0.878 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.586 11.313 20.623 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.037 3.963 3 H 0.087 0.913 4 C -0.010 4.010 5 C -0.568 4.568 6 H 0.069 0.931 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.199 1.199 13 O -0.224 6.224 14 C 0.030 3.970 15 C -0.201 4.201 16 C -0.122 4.122 17 C -0.073 4.073 18 C -0.002 4.002 19 N -0.291 5.291 20 C -0.097 4.097 21 C -0.243 4.243 22 C -0.209 4.209 23 N -0.166 5.166 24 C -0.110 4.110 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.018 0.982 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.170 0.830 32 H 0.183 0.817 33 H 0.066 0.934 34 H 0.125 0.875 35 H 0.161 0.839 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.548 11.102 20.829 24.246 hybrid contribution 1.091 -0.551 -1.016 1.589 sum -4.457 10.551 19.813 22.886 Atomic orbital electron populations 1.22313 0.93911 1.02945 1.03306 1.22657 0.94077 0.96205 0.83314 0.91328 1.19136 0.95488 0.95261 0.91091 1.21467 0.93253 1.34360 1.07750 0.93144 1.25836 1.03345 0.94856 0.95343 1.70055 1.37425 1.36754 1.12742 0.85494 0.79920 0.78014 0.78221 1.19305 1.20491 1.19900 1.86223 1.80607 1.38774 1.16821 1.20546 0.95719 0.92167 0.88538 1.22026 1.03632 0.93563 1.00892 1.22047 0.96769 1.02034 0.91306 1.21310 0.98451 0.90779 0.96750 1.20700 0.92218 0.99253 0.87991 1.60290 1.41382 1.13722 1.13714 1.22536 1.00016 1.01148 0.86012 1.23478 1.04712 0.97677 0.98477 1.23173 0.94499 1.00395 1.02812 1.67450 1.15584 1.07774 1.25784 1.22158 1.00810 1.01159 0.86843 0.91061 0.89776 0.92468 0.98183 0.95392 0.92656 0.83030 0.81672 0.93359 0.87484 0.83865 0.85987 0.89218 0.87537 0.87303 0.89364 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.34 9.20 71.98 0.66 -4.68 16 2 C 0.09 3.75 2.17 30.60 0.07 3.82 16 3 H 0.07 2.63 6.32 -2.39 -0.02 2.62 16 4 C 0.03 1.40 4.68 29.85 0.14 1.54 16 5 C -0.53 -30.13 8.88 25.60 0.23 -29.90 16 6 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 7 C 0.00 0.24 5.46 84.66 0.46 0.70 16 8 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 9 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 O -0.31 -13.11 9.56 -92.55 -0.89 -14.00 16 14 C 0.08 2.81 6.62 22.60 0.15 2.96 16 15 C -0.17 -5.13 8.35 22.56 0.19 -4.94 16 16 C -0.10 -2.48 9.71 22.35 0.22 -2.27 16 17 C 0.07 1.69 6.29 42.56 0.27 1.96 16 18 C 0.13 2.44 5.84 85.56 0.50 2.94 16 19 N -0.66 -12.36 6.77 -495.55 -3.35 -15.71 16 20 C 0.01 0.19 6.31 44.92 0.28 0.48 16 21 C -0.20 -2.69 10.23 30.62 0.31 -2.37 16 22 C -0.17 -2.28 10.46 30.62 0.32 -1.96 16 23 N -0.46 -13.95 10.27 -183.49 -1.88 -15.83 16 24 C 0.05 1.64 11.14 84.81 0.94 2.58 16 25 H 0.07 1.93 6.97 -2.39 -0.02 1.92 16 26 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.15 4.04 5.61 -2.91 -0.02 4.03 16 32 H 0.17 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 1.60 8.04 -2.39 -0.02 1.58 16 35 H 0.34 7.04 8.51 -89.69 -0.76 6.27 16 36 H 0.12 1.48 7.90 -2.39 -0.02 1.46 16 37 H 0.09 1.27 8.09 -2.39 -0.02 1.26 16 38 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.16 5.19 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -65.55 344.84 1.19 -64.36 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.26 Total: 19.05 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 4.74 Total: -29.14 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -4.95 Total: -87.11 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.89 Total: -14.00 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.55 1.19 -64.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889420.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.806 kcal (2) G-P(sol) polarization free energy of solvation -65.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds