Wall clock time and date at job start Thu Apr 9 2020 14:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47257 * 2 1 4 4 C 1.52992 * 109.47502 * 120.00705 * 2 1 3 5 5 C 1.50706 * 109.47270 * 184.99494 * 4 2 1 6 6 H 1.07996 * 120.00048 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99727 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00194 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99475 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46902 * 90.00104 * 9 7 5 11 11 H 1.48496 * 109.47106 * 210.00216 * 9 7 5 12 12 H 1.48500 * 109.47344 * 330.00295 * 9 7 5 13 13 O 1.42906 * 109.46456 * 240.00667 * 2 1 3 14 14 C 1.35914 * 117.00047 * 85.24240 * 13 2 1 15 15 C 1.39131 * 120.47185 * 354.65222 * 14 13 2 16 16 C 1.38546 * 118.37343 * 179.73293 * 15 14 13 17 17 C 1.38257 * 119.21735 * 0.49466 * 16 15 14 18 18 C 1.50702 * 119.55561 * 179.76937 * 17 16 15 19 19 N 1.46897 * 109.46567 * 94.72806 * 18 17 16 20 20 C 1.46905 * 110.99459 * 180.02562 * 19 18 17 21 21 C 1.53002 * 117.49351 * 223.74478 * 20 19 18 22 22 C 1.53002 * 117.49762 * 155.08928 * 20 19 18 23 23 N 1.31849 * 120.88480 * 359.49834 * 17 16 15 24 24 C 1.31840 * 121.78418 * 0.24769 * 23 17 16 25 25 H 1.09003 * 109.46846 * 299.99620 * 1 2 3 26 26 H 1.08996 * 109.47357 * 59.99301 * 1 2 3 27 27 H 1.09001 * 109.47257 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47303 * 304.99559 * 4 2 1 29 29 H 1.09007 * 109.47608 * 64.99615 * 4 2 1 30 30 H 0.96996 * 119.99425 * 180.02562 * 8 7 5 31 31 H 1.08005 * 120.81786 * 359.97438 * 15 14 13 32 32 H 1.07994 * 120.39199 * 180.26506 * 16 15 14 33 33 H 1.09001 * 109.46691 * 334.73057 * 18 17 16 34 34 H 1.08998 * 109.47133 * 214.72403 * 18 17 16 35 35 H 1.00896 * 111.00587 * 56.04943 * 19 18 17 36 36 H 1.08995 * 115.55389 * 9.41388 * 20 19 18 37 37 H 1.09001 * 117.50331 * 0.02562 * 21 20 19 38 38 H 1.09008 * 117.49680 * 145.02556 * 21 20 19 39 39 H 1.08996 * 117.49859 * 214.98017 * 22 20 19 40 40 H 1.09003 * 117.49840 * 359.97407 * 22 20 19 41 41 H 1.08002 * 119.65750 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5420 -0.6151 1.3124 6 1 4.0790 -0.0856 0.5394 7 6 4.2305 -1.1930 2.3580 8 7 3.5765 -1.8373 3.2997 9 14 6.0921 -1.0606 2.4369 10 1 6.4699 0.1621 3.1902 11 1 6.6447 -2.2557 3.1236 12 1 6.6417 -0.9829 1.0595 13 8 2.0062 -0.6736 -1.1670 14 6 2.1171 0.0641 -2.3031 15 6 1.6728 1.3822 -2.3347 16 6 1.8121 2.0958 -3.5141 17 6 2.3741 1.4767 -4.6151 18 6 2.5245 2.2442 -5.9033 19 7 3.8712 2.8269 -5.9716 20 6 4.0544 3.5847 -7.2167 21 6 5.3722 3.3964 -7.9709 22 6 5.1011 4.7007 -7.2170 23 7 2.7850 0.2255 -4.5517 24 6 2.6751 -0.4864 -3.4474 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6055 -0.2619 2.1369 29 1 1.7517 -1.7717 1.2054 30 1 4.0609 -2.2435 4.0353 31 1 1.2336 1.8392 -1.4602 32 1 1.4823 3.1224 -3.5737 33 1 1.7815 3.0409 -5.9404 34 1 2.3771 1.5702 -6.7472 35 1 4.5790 2.1144 -5.8742 36 1 3.1530 3.7400 -7.8094 37 1 6.1031 2.7099 -7.5435 38 1 5.3378 3.4282 -9.0599 39 1 4.8884 5.5900 -7.8102 40 1 5.6535 4.8728 -6.2932 41 1 3.0235 -1.5086 -3.4337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695889423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:46 Heat of formation + Delta-G solvation = 13.328919 kcal Electronic energy + Delta-G solvation = -20559.467298 eV Core-core repulsion = 17440.145604 eV Total energy + Delta-G solvation = -3119.321694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.40928 -38.42227 -37.72319 -34.09831 -33.37493 -31.99943 -31.67662 -29.69485 -27.54919 -25.47426 -23.51939 -23.36355 -22.58742 -21.89569 -21.41366 -19.98502 -17.81797 -16.67258 -16.45253 -16.36014 -16.10992 -14.99606 -14.88571 -14.52146 -14.28962 -14.16899 -13.67077 -13.33488 -13.19778 -12.80261 -12.46701 -12.27853 -11.98058 -11.80701 -11.71781 -11.60431 -11.46344 -11.17637 -11.04406 -10.78323 -10.59728 -10.49175 -10.18879 -9.60538 -9.39579 -9.36557 -9.16845 -8.45500 -8.42632 -7.90748 -6.05691 -4.07552 1.36688 1.48058 3.30817 3.37347 3.42469 3.55946 3.66951 3.82184 4.18485 4.43382 4.54267 4.67653 4.71390 4.80042 4.90864 5.00160 5.21137 5.24423 5.31749 5.41952 5.42786 5.49037 5.58023 5.60578 5.66222 5.72019 5.83468 5.93097 5.95295 6.08309 6.24508 6.35524 6.53552 6.64662 6.66705 6.83410 7.13023 7.40717 7.50977 7.90290 7.92932 8.19301 8.30466 8.95933 9.56400 11.05643 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.003689 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.685415 B = 7587.550682 C = 8626.971051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.085 3.915 3 H 0.063 0.937 4 C 0.025 3.975 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 O -0.283 6.283 14 C 0.109 3.891 15 C -0.177 4.177 16 C -0.106 4.106 17 C 0.061 3.939 18 C 0.124 3.876 19 N -0.655 5.655 20 C 0.024 3.976 21 C -0.208 4.208 22 C -0.172 4.172 23 N -0.445 5.445 24 C 0.062 3.938 25 H 0.069 0.931 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.040 0.960 29 H 0.030 0.970 30 H 0.262 0.738 31 H 0.141 0.859 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.350 0.650 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.572 9.890 -18.201 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.029 3.971 3 H 0.081 0.919 4 C -0.011 4.011 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 O -0.194 6.194 14 C 0.059 3.941 15 C -0.203 4.203 16 C -0.127 4.127 17 C -0.077 4.077 18 C -0.005 4.005 19 N -0.286 5.286 20 C -0.087 4.087 21 C -0.247 4.247 22 C -0.211 4.211 23 N -0.155 5.155 24 C -0.097 4.097 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.159 0.841 32 H 0.149 0.851 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.170 0.830 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.332 9.736 -18.326 21.017 hybrid contribution 0.706 -0.065 0.461 0.846 sum -2.626 9.671 -17.864 20.483 Atomic orbital electron populations 1.22413 0.96809 1.02775 1.01491 1.22948 0.91926 0.97171 0.85028 0.91920 1.19279 0.96667 0.96561 0.88620 1.21103 0.91611 1.34679 1.08049 0.92636 1.24974 0.98546 0.95130 0.95620 1.69944 1.35661 1.35863 1.12058 0.86576 0.85577 0.77554 0.78271 1.20647 1.21123 1.19777 1.86313 1.79411 1.37592 1.16039 1.20377 0.93517 0.91028 0.89215 1.21831 1.04284 0.94461 0.99746 1.21679 0.98412 1.00218 0.92358 1.20701 1.00398 0.90935 0.95654 1.20633 0.90986 0.95951 0.92938 1.60260 1.04445 1.30377 1.33476 1.22403 0.93325 1.00934 0.92055 1.23442 1.00541 1.01436 0.99269 1.23131 1.03222 0.92422 1.02289 1.67384 1.14858 1.06849 1.26405 1.22090 1.00381 1.00763 0.86487 0.91184 0.93415 0.91745 0.94243 0.95155 0.92876 0.84113 0.85069 0.89732 0.93441 0.83039 0.87303 0.88650 0.88845 0.88815 0.88374 0.82074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 9.20 37.16 0.34 -2.53 16 2 C 0.08 1.70 2.17 -26.74 -0.06 1.64 16 3 H 0.06 1.22 6.33 -51.93 -0.33 0.89 16 4 C 0.03 0.64 4.68 -27.88 -0.13 0.51 16 5 C -0.52 -14.41 8.88 -34.44 -0.31 -14.72 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 O -0.28 -5.82 9.56 -19.47 -0.19 -6.00 16 14 C 0.11 1.94 6.62 -39.08 -0.26 1.68 16 15 C -0.18 -2.74 8.35 -39.14 -0.33 -3.07 16 16 C -0.11 -1.45 9.71 -39.46 -0.38 -1.83 16 17 C 0.06 0.85 6.29 -82.58 -0.52 0.33 16 18 C 0.12 1.36 5.84 -4.98 -0.03 1.33 16 19 N -0.65 -7.22 6.77 -107.99 -0.73 -7.95 16 20 C 0.02 0.21 6.31 -67.71 -0.43 -0.22 16 21 C -0.21 -1.69 10.23 -26.69 -0.27 -1.96 16 22 C -0.17 -1.45 10.46 -26.69 -0.28 -1.73 16 23 N -0.45 -6.99 10.27 -9.35 -0.10 -7.09 16 24 C 0.06 1.04 11.14 -17.38 -0.19 0.85 16 25 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.68 6.98 -51.93 -0.36 0.32 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.14 2.03 5.61 -52.48 -0.29 1.74 16 32 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.08 0.78 8.04 -51.93 -0.42 0.37 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.35 4.12 8.51 -39.29 -0.33 3.78 16 36 H 0.11 0.84 7.90 -51.93 -0.41 0.43 16 37 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.16 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 344.85 15.07 5.20 5.20 Total: -1.00 -30.25 344.85 -9.38 -39.62 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.34 Total: 3.37 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -2.94 Total: -18.16 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: -0.09 Total: -40.78 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.19 Total: -6.00 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.25 -9.38 -39.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.952 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds