Wall clock time and date at job start Thu Apr 9 2020 14:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47257 * 2 1 4 4 C 1.52992 * 109.47502 * 120.00705 * 2 1 3 5 5 C 1.50706 * 109.47270 * 184.99494 * 4 2 1 6 6 H 1.07996 * 120.00048 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99727 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00194 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99475 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46902 * 90.00104 * 9 7 5 11 11 H 1.48496 * 109.47106 * 210.00216 * 9 7 5 12 12 H 1.48500 * 109.47344 * 330.00295 * 9 7 5 13 13 O 1.42906 * 109.46456 * 240.00667 * 2 1 3 14 14 C 1.35914 * 117.00047 * 85.24240 * 13 2 1 15 15 C 1.39131 * 120.47185 * 354.65222 * 14 13 2 16 16 C 1.38546 * 118.37343 * 179.73293 * 15 14 13 17 17 C 1.38257 * 119.21735 * 0.49466 * 16 15 14 18 18 C 1.50702 * 119.55561 * 179.76937 * 17 16 15 19 19 N 1.46897 * 109.46567 * 94.72806 * 18 17 16 20 20 C 1.46905 * 110.99459 * 180.02562 * 19 18 17 21 21 C 1.53002 * 117.49351 * 223.74478 * 20 19 18 22 22 C 1.53002 * 117.49762 * 155.08928 * 20 19 18 23 23 N 1.31849 * 120.88480 * 359.49834 * 17 16 15 24 24 C 1.31840 * 121.78418 * 0.24769 * 23 17 16 25 25 H 1.09003 * 109.46846 * 299.99620 * 1 2 3 26 26 H 1.08996 * 109.47357 * 59.99301 * 1 2 3 27 27 H 1.09001 * 109.47257 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47303 * 304.99559 * 4 2 1 29 29 H 1.09007 * 109.47608 * 64.99615 * 4 2 1 30 30 H 0.96996 * 119.99425 * 180.02562 * 8 7 5 31 31 H 1.08005 * 120.81786 * 359.97438 * 15 14 13 32 32 H 1.07994 * 120.39199 * 180.26506 * 16 15 14 33 33 H 1.09001 * 109.46691 * 334.73057 * 18 17 16 34 34 H 1.08998 * 109.47133 * 214.72403 * 18 17 16 35 35 H 1.00896 * 111.00587 * 56.04943 * 19 18 17 36 36 H 1.08995 * 115.55389 * 9.41388 * 20 19 18 37 37 H 1.09001 * 117.50331 * 0.02562 * 21 20 19 38 38 H 1.09008 * 117.49680 * 145.02556 * 21 20 19 39 39 H 1.08996 * 117.49859 * 214.98017 * 22 20 19 40 40 H 1.09003 * 117.49840 * 359.97407 * 22 20 19 41 41 H 1.08002 * 119.65750 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5420 -0.6151 1.3124 6 1 4.0790 -0.0856 0.5394 7 6 4.2305 -1.1930 2.3580 8 7 3.5765 -1.8373 3.2997 9 14 6.0921 -1.0606 2.4369 10 1 6.4699 0.1621 3.1902 11 1 6.6447 -2.2557 3.1236 12 1 6.6417 -0.9829 1.0595 13 8 2.0062 -0.6736 -1.1670 14 6 2.1171 0.0641 -2.3031 15 6 1.6728 1.3822 -2.3347 16 6 1.8121 2.0958 -3.5141 17 6 2.3741 1.4767 -4.6151 18 6 2.5245 2.2442 -5.9033 19 7 3.8712 2.8269 -5.9716 20 6 4.0544 3.5847 -7.2167 21 6 5.3722 3.3964 -7.9709 22 6 5.1011 4.7007 -7.2170 23 7 2.7850 0.2255 -4.5517 24 6 2.6751 -0.4864 -3.4474 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6055 -0.2619 2.1369 29 1 1.7517 -1.7717 1.2054 30 1 4.0609 -2.2435 4.0353 31 1 1.2336 1.8392 -1.4602 32 1 1.4823 3.1224 -3.5737 33 1 1.7815 3.0409 -5.9404 34 1 2.3771 1.5702 -6.7472 35 1 4.5790 2.1144 -5.8742 36 1 3.1530 3.7400 -7.8094 37 1 6.1031 2.7099 -7.5435 38 1 5.3378 3.4282 -9.0599 39 1 4.8884 5.5900 -7.8102 40 1 5.6535 4.8728 -6.2932 41 1 3.0235 -1.5086 -3.4337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695889423.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:46 Heat of formation + Delta-G solvation = -5.573611 kcal Electronic energy + Delta-G solvation = -20560.286973 eV Core-core repulsion = 17440.145604 eV Total energy + Delta-G solvation = -3120.141369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.66378 -39.65936 -38.58487 -35.62105 -34.71727 -33.41949 -33.17004 -30.83055 -29.41108 -26.53274 -25.25703 -24.69400 -23.24847 -23.15976 -22.10576 -21.47614 -19.21030 -18.54741 -17.82796 -17.41014 -16.96973 -16.54869 -16.23514 -15.93068 -15.45479 -15.21464 -14.84851 -14.72210 -14.28962 -14.03539 -13.78587 -13.73701 -13.34913 -13.26883 -13.17474 -12.79731 -12.68196 -12.58842 -12.35279 -12.31852 -11.93441 -11.77021 -11.36013 -11.24937 -11.15352 -10.66199 -10.63483 -10.52889 -9.33524 -9.11122 -8.23249 -6.32132 0.17900 0.26768 1.37030 1.38394 1.49460 2.30380 2.38526 2.66482 2.95612 3.11449 3.22233 3.50477 3.71731 3.79431 3.97983 4.03879 4.09106 4.13814 4.17573 4.22560 4.28457 4.42157 4.60435 4.64861 4.74720 4.79799 4.82136 4.83320 4.96110 5.08526 5.12705 5.18031 5.20585 5.30159 5.32562 5.41829 5.60776 5.74377 6.06778 6.15806 6.25631 6.50992 6.79558 6.98521 7.35677 8.88383 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.018457 B = 0.003689 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.685415 B = 7587.550682 C = 8626.971051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 H 0.068 0.932 4 C 0.027 3.973 5 C -0.532 4.532 6 H 0.049 0.951 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.957 3.043 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.272 1.272 13 O -0.312 6.312 14 C 0.079 3.921 15 C -0.175 4.175 16 C -0.101 4.101 17 C 0.065 3.935 18 C 0.128 3.872 19 N -0.665 5.665 20 C 0.016 3.984 21 C -0.205 4.205 22 C -0.173 4.173 23 N -0.456 5.456 24 C 0.048 3.952 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.028 0.972 29 H 0.000 1.000 30 H 0.265 0.735 31 H 0.152 0.848 32 H 0.166 0.834 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.341 0.659 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 12.044 -19.991 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.037 3.963 3 H 0.086 0.914 4 C -0.010 4.010 5 C -0.570 4.570 6 H 0.068 0.932 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.205 1.205 12 H -0.197 1.197 13 O -0.224 6.224 14 C 0.030 3.970 15 C -0.201 4.201 16 C -0.121 4.121 17 C -0.073 4.073 18 C -0.001 4.001 19 N -0.295 5.295 20 C -0.094 4.094 21 C -0.244 4.244 22 C -0.211 4.211 23 N -0.166 5.166 24 C -0.110 4.110 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.019 0.981 30 H 0.074 0.926 31 H 0.170 0.830 32 H 0.183 0.817 33 H 0.127 0.873 34 H 0.069 0.931 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.103 0.897 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.360 11.897 -20.130 23.623 hybrid contribution 0.723 -0.677 0.901 1.339 sum -2.636 11.220 -19.228 22.418 Atomic orbital electron populations 1.22313 0.93796 1.02982 1.03355 1.22657 0.94157 0.96159 0.83303 0.91426 1.19132 0.95426 0.95279 0.91114 1.21444 0.93312 1.34439 1.07796 0.93231 1.25823 1.03308 0.94811 0.95320 1.70052 1.37500 1.36723 1.12695 0.85561 0.79909 0.78035 0.78268 1.19405 1.20487 1.19686 1.86224 1.80635 1.38706 1.16878 1.20542 0.95690 0.92218 0.88517 1.22029 1.03629 0.93527 1.00934 1.22052 0.97323 1.01514 0.91248 1.21326 0.98564 0.90384 0.97055 1.20713 0.91700 0.96418 0.91266 1.60281 1.04119 1.30134 1.35016 1.22534 0.94310 1.00935 0.91626 1.23477 0.99803 1.01049 1.00067 1.23171 1.02772 0.93092 1.02062 1.67453 1.15409 1.07881 1.25841 1.22156 1.00846 1.01172 0.86829 0.89790 0.90939 0.92420 0.95402 0.98143 0.92634 0.83025 0.81660 0.87288 0.93120 0.83971 0.85656 0.89459 0.87355 0.87166 0.89683 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.28 9.20 71.98 0.66 -4.62 16 2 C 0.09 3.75 2.17 30.59 0.07 3.81 16 3 H 0.07 2.61 6.33 -2.39 -0.02 2.60 16 4 C 0.03 1.42 4.68 29.85 0.14 1.56 16 5 C -0.53 -30.40 8.88 25.60 0.23 -30.18 16 6 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 7 C 0.01 0.32 5.46 84.66 0.46 0.78 16 8 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 9 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 13 O -0.31 -13.14 9.56 -92.59 -0.89 -14.03 16 14 C 0.08 2.82 6.62 22.60 0.15 2.97 16 15 C -0.17 -5.13 8.35 22.56 0.19 -4.94 16 16 C -0.10 -2.48 9.71 22.35 0.22 -2.26 16 17 C 0.07 1.68 6.29 42.56 0.27 1.94 16 18 C 0.13 2.43 5.84 85.56 0.50 2.93 16 19 N -0.67 -13.21 6.77 -495.57 -3.35 -16.56 16 20 C 0.02 0.25 6.31 44.92 0.28 0.53 16 21 C -0.21 -2.91 10.23 30.62 0.31 -2.60 16 22 C -0.17 -2.52 10.46 30.62 0.32 -2.20 16 23 N -0.46 -13.96 10.27 -183.48 -1.88 -15.84 16 24 C 0.05 1.63 11.14 84.80 0.94 2.57 16 25 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.07 1.92 6.98 -2.39 -0.02 1.90 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.03 1.47 8.14 -2.38 -0.02 1.46 16 29 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 30 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.15 4.04 5.61 -2.91 -0.02 4.03 16 32 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 33 H 0.11 1.56 8.04 -2.39 -0.02 1.54 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.34 7.61 8.51 -89.70 -0.76 6.85 16 36 H 0.13 1.51 7.90 -2.39 -0.02 1.49 16 37 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 38 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.16 5.20 8.06 -2.91 -0.02 5.18 16 Total: -1.00 -66.08 344.85 1.19 -64.90 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.26 Total: 19.89 kcal Atomic # 6 Polarization: -34.44 SS G_CDS: 4.74 Total: -29.70 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -4.95 Total: -88.16 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.89 Total: -14.03 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -66.08 1.19 -64.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695889423.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.323 kcal (2) G-P(sol) polarization free energy of solvation -66.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds