Wall clock time and date at job start Thu Apr 9 2020 14:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35908 * 116.99736 * 2 1 4 4 C 1.38754 * 120.47599 * 0.02562 * 3 2 1 5 5 N 1.31814 * 120.68157 * 179.97438 * 4 3 2 6 6 C 1.31871 * 121.78378 * 359.70964 * 5 4 3 7 7 C 1.38208 * 120.88395 * 0.57974 * 6 5 4 8 8 C 1.50707 * 120.38626 * 179.70468 * 7 6 5 9 9 N 1.46898 * 109.47177 * 269.72507 * 8 7 6 10 10 C 1.46901 * 111.00195 * 293.95588 * 9 8 7 11 11 C 1.46892 * 111.00280 * 170.00180 * 9 8 7 12 12 C 1.53001 * 109.47383 * 196.11027 * 11 9 8 13 13 C 1.50698 * 115.55225 * 55.18501 * 12 11 9 14 14 H 1.08004 * 120.00272 * 265.04629 * 13 12 11 15 15 C 1.37882 * 119.99932 * 85.03847 * 13 12 11 16 16 N 1.31516 * 120.00300 * 4.43905 * 15 13 12 17 17 Si 1.86801 * 119.99908 * 184.43815 * 15 13 12 18 18 H 1.48493 * 109.47597 * 60.00121 * 17 15 13 19 19 H 1.48501 * 109.46927 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47086 * 299.99948 * 17 15 13 21 21 C 1.53000 * 117.49814 * 269.51525 * 12 11 9 22 22 C 1.53006 * 117.49987 * 200.85712 * 12 11 9 23 23 C 1.38575 * 119.22827 * 359.43472 * 7 6 5 24 24 H 1.09005 * 109.46782 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47364 * 299.99315 * 1 2 3 26 26 H 1.08996 * 109.47552 * 60.00097 * 1 2 3 27 27 H 1.08000 * 119.65819 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.55715 * 180.31267 * 6 5 4 29 29 H 1.09002 * 109.47194 * 149.72614 * 8 7 6 30 30 H 1.08996 * 109.46901 * 29.72541 * 8 7 6 31 31 H 1.08999 * 109.47023 * 59.57697 * 10 9 8 32 32 H 1.08997 * 109.47476 * 179.57876 * 10 9 8 33 33 H 1.09005 * 109.47222 * 299.57726 * 10 9 8 34 34 H 1.09003 * 109.47274 * 316.10855 * 11 9 8 35 35 H 1.09001 * 109.47843 * 76.10761 * 11 9 8 36 36 H 0.96996 * 120.00321 * 185.01153 * 16 15 13 37 37 H 1.08995 * 117.49705 * 0.02562 * 21 12 11 38 38 H 1.09001 * 117.49395 * 145.01789 * 21 12 11 39 39 H 1.08996 * 117.49370 * 214.97930 * 22 12 11 40 40 H 1.08994 * 117.49768 * 359.97438 * 22 12 11 41 41 H 1.07995 * 120.81886 * 180.25225 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2999 2.3809 0.0005 5 7 1.8940 3.5575 0.0010 6 6 3.2077 3.6723 0.0067 7 6 4.0177 2.5524 0.0005 8 6 5.5178 2.6966 0.0004 9 7 6.0051 2.7441 -1.3846 10 6 5.7771 1.4634 -2.0672 11 6 7.4245 3.1198 -1.4308 12 6 7.7927 3.5482 -2.8527 13 6 6.9487 4.6508 -3.4384 14 1 6.0996 4.4085 -4.0604 15 6 7.2604 5.9688 -3.1802 16 7 8.3433 6.2667 -2.4960 17 14 6.1445 7.3316 -3.8024 18 1 4.7876 7.1637 -3.2228 19 1 6.6974 8.6485 -3.3958 20 1 6.0616 7.2661 -5.2836 21 6 8.3030 2.4664 -3.8067 22 6 9.2719 3.5082 -3.2419 23 6 3.4344 1.2954 -0.0001 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2212 2.3268 0.0014 28 1 3.6567 4.6545 0.0121 29 1 5.9648 1.8453 0.5138 30 1 5.7943 3.6171 0.5146 31 1 4.7104 1.2397 -2.0730 32 1 6.1403 1.5286 -3.0928 33 1 6.3115 0.6717 -1.5421 34 1 7.6039 3.9471 -0.7441 35 1 8.0361 2.2661 -1.1387 36 1 8.5247 7.1877 -2.2517 37 1 8.3759 1.4494 -3.4215 38 1 8.0284 2.5524 -4.8580 39 1 9.6343 4.2791 -3.9218 40 1 9.9827 3.1770 -2.4848 41 1 4.0428 0.4031 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700020253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:48 Heat of formation + Delta-G solvation = 34.654066 kcal Electronic energy + Delta-G solvation = -21513.194613 eV Core-core repulsion = 18394.797646 eV Total energy + Delta-G solvation = -3118.396966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.62821 -38.39401 -37.45469 -35.32660 -32.31761 -31.74125 -30.64877 -27.76725 -27.04212 -26.48795 -25.14407 -23.40135 -22.51807 -21.01844 -20.74315 -18.94154 -17.79391 -16.99887 -16.57453 -16.00946 -15.90404 -14.90495 -14.58165 -14.52230 -14.24266 -14.04692 -13.47952 -13.32136 -13.04637 -12.75015 -12.55524 -12.11387 -11.99298 -11.62281 -11.59647 -11.25524 -11.07870 -11.03071 -10.79121 -10.64118 -10.37684 -10.06826 -9.48858 -9.37699 -9.23243 -8.85415 -8.37581 -8.24890 -7.97370 -7.48391 -5.88640 -3.90280 1.20013 1.39136 3.06108 3.41599 3.45546 3.50954 3.85629 4.52917 4.54479 4.64088 4.74210 4.87592 4.92235 5.03175 5.11295 5.22714 5.33906 5.38936 5.41779 5.48194 5.75413 5.90819 5.95490 6.01851 6.04197 6.23683 6.30320 6.39479 6.48949 6.54817 6.61371 6.63509 6.78142 6.94961 7.15669 7.18230 7.50533 7.58481 7.79598 7.96772 8.03674 8.08353 8.61032 9.07969 9.72602 11.20608 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019677 B = 0.004998 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.659573 B = 5600.749641 C = 6444.622978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C 0.069 3.931 4 C 0.009 3.991 5 N -0.452 5.452 6 C 0.088 3.912 7 C -0.072 4.072 8 C 0.094 3.906 9 N -0.509 5.509 10 C 0.026 3.974 11 C 0.104 3.896 12 C 0.053 3.947 13 C -0.460 4.460 14 H 0.056 0.944 15 C 0.069 3.931 16 N -0.889 5.889 17 Si 0.884 3.116 18 H -0.276 1.276 19 H -0.290 1.290 20 H -0.280 1.280 21 C -0.218 4.218 22 C -0.152 4.152 23 C -0.105 4.105 24 H 0.100 0.900 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.152 0.848 28 H 0.162 0.838 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.010 0.990 34 H 0.074 0.926 35 H 0.003 0.997 36 H 0.257 0.743 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.772 -10.984 6.911 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.228 6.228 3 C 0.022 3.978 4 C -0.149 4.149 5 N -0.161 5.161 6 C -0.071 4.071 7 C -0.075 4.075 8 C -0.035 4.035 9 N -0.231 5.231 10 C -0.122 4.122 11 C -0.023 4.023 12 C 0.052 3.948 13 C -0.498 4.498 14 H 0.074 0.926 15 C -0.132 4.132 16 N -0.527 5.527 17 Si 0.712 3.288 18 H -0.201 1.201 19 H -0.216 1.216 20 H -0.206 1.206 21 C -0.256 4.256 22 C -0.190 4.190 23 C -0.132 4.132 24 H 0.118 0.882 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.169 0.831 28 H 0.179 0.821 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.028 0.972 34 H 0.093 0.907 35 H 0.021 0.979 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.332 -9.903 6.677 16.464 hybrid contribution 0.126 -0.513 0.092 0.536 sum -11.206 -10.416 6.769 16.730 Atomic orbital electron populations 1.23066 0.78361 1.04000 1.01501 1.86056 1.21359 1.26394 1.88945 1.20002 0.93070 0.85523 0.99169 1.22811 1.00193 0.87438 1.04464 1.67560 1.12402 1.26222 1.09896 1.22652 0.88064 0.99233 0.97112 1.20744 0.97574 0.92510 0.96650 1.21040 0.88878 1.01591 0.91985 1.61795 1.20226 1.29517 1.11611 1.22457 1.00179 0.89140 1.00457 1.21721 0.84133 0.96741 0.99662 1.18782 0.92702 0.93840 0.89426 1.20204 1.11071 0.88800 1.29756 0.92560 1.24879 0.94492 0.98257 0.95582 1.69996 1.24302 1.18644 1.39796 0.86800 0.81484 0.81373 0.79158 1.20121 1.21622 1.20599 1.23060 1.09443 0.93415 0.99652 1.22506 0.94153 0.99815 1.02540 1.20815 0.91414 0.98470 1.02461 0.88184 0.92598 0.92464 0.83061 0.82079 0.94612 0.89339 0.92673 0.90284 0.97170 0.90742 0.97861 0.93334 0.92223 0.90681 0.89714 0.92349 0.84533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.82 101.05 0.99 1.19 16 2 O -0.32 -3.74 10.51 -19.45 -0.20 -3.94 16 3 C 0.07 0.94 6.71 -39.07 -0.26 0.67 16 4 C 0.01 0.12 10.22 -17.37 -0.18 -0.05 16 5 N -0.45 -7.26 10.35 -13.13 -0.14 -7.39 16 6 C 0.09 1.42 10.85 -17.55 -0.19 1.23 16 7 C -0.07 -1.11 4.89 -104.51 -0.51 -1.62 16 8 C 0.09 1.50 5.13 -4.97 -0.03 1.47 16 9 N -0.51 -9.80 4.41 -244.37 -1.08 -10.87 16 10 C 0.03 0.45 8.93 60.06 0.54 0.99 16 11 C 0.10 2.23 4.88 -3.83 -0.02 2.21 16 12 C 0.05 1.27 1.24 -155.66 -0.19 1.08 16 13 C -0.46 -12.37 8.53 -34.44 -0.29 -12.67 16 14 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 15 C 0.07 1.88 5.43 -17.82 -0.10 1.78 16 16 N -0.89 -24.89 12.65 55.43 0.70 -24.19 16 17 Si 0.88 21.51 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 21 C -0.22 -4.72 8.35 -26.69 -0.22 -4.94 16 22 C -0.15 -3.56 9.18 -26.69 -0.24 -3.80 16 23 C -0.10 -1.48 8.09 -39.14 -0.32 -1.79 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.36 7.68 -51.93 -0.40 -0.04 16 26 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 27 H 0.15 1.60 6.32 -52.49 -0.33 1.27 16 28 H 0.16 2.57 8.06 -52.49 -0.42 2.14 16 29 H 0.04 0.52 8.07 -51.93 -0.42 0.10 16 30 H 0.09 1.40 7.81 -51.93 -0.41 1.00 16 31 H 0.05 0.91 6.15 -51.93 -0.32 0.59 16 32 H 0.08 1.49 6.03 -51.93 -0.31 1.18 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.07 1.71 7.81 -51.93 -0.41 1.31 16 35 H 0.00 0.07 8.00 -51.93 -0.42 -0.35 16 36 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 37 H 0.06 1.16 8.02 -51.93 -0.42 0.75 16 38 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 39 H 0.08 2.15 8.14 -51.93 -0.42 1.73 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -29.76 337.57 -8.00 -37.76 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.33 Total: 1.32 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -1.02 Total: -14.25 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.51 Total: -42.46 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -0.20 Total: -3.94 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.76 -8.00 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700020253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.416 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds