Wall clock time and date at job start Thu Apr 9 2020 14:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35908 * 116.99736 * 2 1 4 4 C 1.38754 * 120.47599 * 0.02562 * 3 2 1 5 5 N 1.31814 * 120.68157 * 179.97438 * 4 3 2 6 6 C 1.31871 * 121.78378 * 359.70964 * 5 4 3 7 7 C 1.38208 * 120.88395 * 0.57974 * 6 5 4 8 8 C 1.50707 * 120.38626 * 179.70468 * 7 6 5 9 9 N 1.46898 * 109.47177 * 269.72507 * 8 7 6 10 10 C 1.46901 * 111.00195 * 293.95588 * 9 8 7 11 11 C 1.46892 * 111.00280 * 170.00180 * 9 8 7 12 12 C 1.53001 * 109.47383 * 196.11027 * 11 9 8 13 13 C 1.50698 * 115.55225 * 55.18501 * 12 11 9 14 14 H 1.08004 * 120.00272 * 265.04629 * 13 12 11 15 15 C 1.37882 * 119.99932 * 85.03847 * 13 12 11 16 16 N 1.31516 * 120.00300 * 4.43905 * 15 13 12 17 17 Si 1.86801 * 119.99908 * 184.43815 * 15 13 12 18 18 H 1.48493 * 109.47597 * 60.00121 * 17 15 13 19 19 H 1.48501 * 109.46927 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47086 * 299.99948 * 17 15 13 21 21 C 1.53000 * 117.49814 * 269.51525 * 12 11 9 22 22 C 1.53006 * 117.49987 * 200.85712 * 12 11 9 23 23 C 1.38575 * 119.22827 * 359.43472 * 7 6 5 24 24 H 1.09005 * 109.46782 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47364 * 299.99315 * 1 2 3 26 26 H 1.08996 * 109.47552 * 60.00097 * 1 2 3 27 27 H 1.08000 * 119.65819 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.55715 * 180.31267 * 6 5 4 29 29 H 1.09002 * 109.47194 * 149.72614 * 8 7 6 30 30 H 1.08996 * 109.46901 * 29.72541 * 8 7 6 31 31 H 1.08999 * 109.47023 * 59.57697 * 10 9 8 32 32 H 1.08997 * 109.47476 * 179.57876 * 10 9 8 33 33 H 1.09005 * 109.47222 * 299.57726 * 10 9 8 34 34 H 1.09003 * 109.47274 * 316.10855 * 11 9 8 35 35 H 1.09001 * 109.47843 * 76.10761 * 11 9 8 36 36 H 0.96996 * 120.00321 * 185.01153 * 16 15 13 37 37 H 1.08995 * 117.49705 * 0.02562 * 21 12 11 38 38 H 1.09001 * 117.49395 * 145.01789 * 21 12 11 39 39 H 1.08996 * 117.49370 * 214.97930 * 22 12 11 40 40 H 1.08994 * 117.49768 * 359.97438 * 22 12 11 41 41 H 1.07995 * 120.81886 * 180.25225 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2999 2.3809 0.0005 5 7 1.8940 3.5575 0.0010 6 6 3.2077 3.6723 0.0067 7 6 4.0177 2.5524 0.0005 8 6 5.5178 2.6966 0.0004 9 7 6.0051 2.7441 -1.3846 10 6 5.7771 1.4634 -2.0672 11 6 7.4245 3.1198 -1.4308 12 6 7.7927 3.5482 -2.8527 13 6 6.9487 4.6508 -3.4384 14 1 6.0996 4.4085 -4.0604 15 6 7.2604 5.9688 -3.1802 16 7 8.3433 6.2667 -2.4960 17 14 6.1445 7.3316 -3.8024 18 1 4.7876 7.1637 -3.2228 19 1 6.6974 8.6485 -3.3958 20 1 6.0616 7.2661 -5.2836 21 6 8.3030 2.4664 -3.8067 22 6 9.2719 3.5082 -3.2419 23 6 3.4344 1.2954 -0.0001 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2212 2.3268 0.0014 28 1 3.6567 4.6545 0.0121 29 1 5.9648 1.8453 0.5138 30 1 5.7943 3.6171 0.5146 31 1 4.7104 1.2397 -2.0730 32 1 6.1403 1.5286 -3.0928 33 1 6.3115 0.6717 -1.5421 34 1 7.6039 3.9471 -0.7441 35 1 8.0361 2.2661 -1.1387 36 1 8.5247 7.1877 -2.2517 37 1 8.3759 1.4494 -3.4215 38 1 8.0284 2.5524 -4.8580 39 1 9.6343 4.2791 -3.9218 40 1 9.9827 3.1770 -2.4848 41 1 4.0428 0.4031 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700020253.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:47 Heat of formation + Delta-G solvation = 16.463683 kcal Electronic energy + Delta-G solvation = -21513.983407 eV Core-core repulsion = 18394.797646 eV Total energy + Delta-G solvation = -3119.185761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.68352 -39.55406 -38.88425 -36.88956 -33.88250 -33.45310 -31.72345 -28.64359 -28.51881 -27.78030 -27.06755 -24.51536 -23.83056 -22.81865 -21.97366 -20.82304 -18.77383 -18.06827 -17.86785 -17.60231 -16.85438 -16.57793 -16.20015 -15.90610 -15.82137 -15.13941 -15.01831 -14.41056 -14.37103 -14.08876 -13.91580 -13.47378 -13.29807 -13.05956 -12.76387 -12.72242 -12.59786 -12.46510 -12.41934 -12.36494 -12.23807 -11.91449 -11.22048 -10.83575 -10.52189 -10.46085 -10.22467 -9.83937 -9.41342 -8.91706 -7.97747 -6.02826 0.09219 0.28287 1.44677 1.46738 1.53483 2.22137 2.51828 2.70021 3.28341 3.32678 3.52109 3.65074 3.67536 3.84207 4.00089 4.14204 4.26262 4.38220 4.40438 4.43405 4.50590 4.56099 4.64520 4.71298 4.74899 4.77718 4.80416 4.91200 4.95410 5.02749 5.08668 5.24715 5.26770 5.35216 5.51662 5.71834 5.75129 5.91689 6.23721 6.35041 6.41839 6.62657 6.95763 6.98767 7.61525 9.10475 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019677 B = 0.004998 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.659573 B = 5600.749641 C = 6444.622978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.076 3.924 4 C 0.008 3.992 5 N -0.474 5.474 6 C 0.065 3.935 7 C -0.077 4.077 8 C 0.099 3.901 9 N -0.531 5.531 10 C 0.032 3.968 11 C 0.119 3.881 12 C 0.030 3.970 13 C -0.467 4.467 14 H 0.040 0.960 15 C 0.029 3.971 16 N -0.911 5.911 17 Si 0.933 3.067 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.279 1.279 21 C -0.191 4.191 22 C -0.160 4.160 23 C -0.108 4.108 24 H 0.125 0.875 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.181 0.819 28 H 0.151 0.849 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.049 0.951 35 H 0.020 0.980 36 H 0.255 0.745 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.202 -12.974 7.316 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.028 3.972 4 C -0.150 4.150 5 N -0.183 5.183 6 C -0.092 4.092 7 C -0.080 4.080 8 C -0.029 4.029 9 N -0.255 5.255 10 C -0.116 4.116 11 C -0.009 4.009 12 C 0.029 3.971 13 C -0.505 4.505 14 H 0.058 0.942 15 C -0.170 4.170 16 N -0.551 5.551 17 Si 0.761 3.239 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.205 1.205 21 C -0.229 4.229 22 C -0.198 4.198 23 C -0.135 4.135 24 H 0.143 0.857 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.198 0.802 28 H 0.168 0.832 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.038 0.962 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.772 -11.902 7.077 18.838 hybrid contribution 0.441 0.002 -0.046 0.443 sum -12.332 -11.899 7.031 18.523 Atomic orbital electron populations 1.23435 0.75981 1.06086 1.02523 1.86061 1.23783 1.25333 1.88449 1.20030 0.93002 0.86197 0.97942 1.23279 1.01606 0.86823 1.03320 1.67542 1.12326 1.27674 1.10738 1.22592 0.88618 0.99290 0.98693 1.20599 0.96918 0.92897 0.97537 1.20988 0.89457 1.02134 0.90349 1.61657 1.18865 1.31073 1.13878 1.22386 1.00866 0.88839 0.99500 1.21396 0.85874 0.96422 0.97190 1.18897 0.92422 0.94433 0.91321 1.20382 1.10766 0.90031 1.29334 0.94164 1.25404 0.95545 0.99942 0.96059 1.70080 1.25341 1.18725 1.40963 0.86018 0.79899 0.79449 0.78583 1.20362 1.21306 1.20455 1.23012 1.06807 0.94090 0.98950 1.22402 0.94397 1.00197 1.02781 1.20965 0.92150 0.98299 1.02040 0.85727 0.91264 0.91694 0.80185 0.83197 0.92544 0.90087 0.91925 0.91954 0.95075 0.93238 0.96226 0.93572 0.89378 0.91213 0.92501 0.91012 0.83092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.82 113.37 1.11 1.27 16 2 O -0.32 -6.71 10.51 -92.52 -0.97 -7.68 16 3 C 0.08 1.87 6.71 22.60 0.15 2.03 16 4 C 0.01 0.21 10.22 84.82 0.87 1.07 16 5 N -0.47 -14.89 10.35 -195.44 -2.02 -16.92 16 6 C 0.07 2.13 10.85 84.68 0.92 3.05 16 7 C -0.08 -2.30 4.89 -19.79 -0.10 -2.40 16 8 C 0.10 3.07 5.13 85.56 0.44 3.51 16 9 N -0.53 -20.02 4.41 -927.06 -4.08 -24.10 16 10 C 0.03 1.05 8.93 127.69 1.14 2.19 16 11 C 0.12 5.01 4.88 86.31 0.42 5.43 16 12 C 0.03 1.43 1.24 -52.93 -0.07 1.36 16 13 C -0.47 -25.40 8.53 25.60 0.22 -25.18 16 14 H 0.04 2.27 7.82 -2.91 -0.02 2.24 16 15 C 0.03 1.61 5.43 84.66 0.46 2.07 16 16 N -0.91 -51.92 12.65 21.45 0.27 -51.65 16 17 Si 0.93 44.81 29.54 68.60 2.03 46.84 16 18 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 C -0.19 -8.01 8.35 30.62 0.26 -7.76 16 22 C -0.16 -7.43 9.18 30.62 0.28 -7.15 16 23 C -0.11 -2.83 8.09 22.56 0.18 -2.64 16 24 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.07 0.64 7.68 -2.39 -0.02 0.62 16 26 H 0.06 0.68 7.68 -2.39 -0.02 0.66 16 27 H 0.18 3.30 6.32 -2.91 -0.02 3.28 16 28 H 0.15 5.01 8.06 -2.91 -0.02 4.99 16 29 H 0.06 1.52 8.07 -2.39 -0.02 1.50 16 30 H 0.08 2.60 7.81 -2.39 -0.02 2.58 16 31 H 0.06 1.94 6.15 -2.39 -0.01 1.93 16 32 H 0.06 2.24 6.03 -2.39 -0.01 2.22 16 33 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.05 2.30 7.81 -2.39 -0.02 2.28 16 35 H 0.02 0.76 8.00 -2.39 -0.02 0.74 16 36 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 37 H 0.09 3.18 8.02 -2.39 -0.02 3.16 16 38 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -63.57 337.57 2.51 -61.07 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.00 Total: 15.59 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: 6.29 Total: -23.15 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -5.84 Total: -92.67 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.97 Total: -7.68 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -63.57 2.51 -61.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700020253.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.530 kcal (2) G-P(sol) polarization free energy of solvation -63.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds