Wall clock time and date at job start Thu Apr 9 2020 14:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46678 * 2 1 4 4 C 1.50698 * 109.46562 * 240.00124 * 2 1 3 5 5 H 1.08001 * 119.99414 * 239.99138 * 4 2 1 6 6 C 1.37878 * 120.00278 * 60.00133 * 4 2 1 7 7 N 1.31514 * 119.99914 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99736 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47573 * 60.00119 * 8 6 4 10 10 H 1.48506 * 109.46702 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47088 * 299.99680 * 8 6 4 12 12 N 1.46496 * 109.47310 * 120.00012 * 2 1 3 13 13 C 1.46501 * 120.00206 * 59.99762 * 12 2 1 14 14 C 1.34777 * 119.99831 * 240.00186 * 12 2 1 15 15 O 1.21695 * 120.00263 * 354.61486 * 14 12 2 16 16 C 1.46684 * 119.99727 * 174.90005 * 14 12 2 17 17 C 1.37868 * 126.23165 * 352.65152 * 16 14 12 18 18 C 1.39844 * 107.08312 * 179.84893 * 17 16 14 19 19 C 1.35452 * 107.85952 * 0.42133 * 18 17 16 20 20 N 1.35528 * 108.87636 * 359.73730 * 19 18 17 21 21 C 1.46502 * 125.67821 * 179.97438 * 20 19 18 22 22 C 1.53780 * 113.61153 * 32.33308 * 21 20 19 23 23 C 1.53786 * 87.07865 * 220.01722 * 22 21 20 24 24 C 1.53772 * 113.61481 * 294.83298 * 21 20 19 25 25 H 1.09003 * 109.46663 * 300.00089 * 1 2 3 26 26 H 1.08997 * 109.47155 * 59.99653 * 1 2 3 27 27 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99757 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47108 * 265.46535 * 13 12 2 30 30 H 1.08999 * 109.47019 * 25.45873 * 13 12 2 31 31 H 1.08999 * 109.47338 * 145.46202 * 13 12 2 32 32 H 1.07996 * 126.46320 * 359.96695 * 17 16 14 33 33 H 1.07993 * 126.06725 * 180.15660 * 18 17 16 34 34 H 1.08004 * 125.55794 * 179.71869 * 19 18 17 35 35 H 1.09000 * 112.84507 * 163.63384 * 21 20 19 36 36 H 1.08999 * 113.61884 * 334.56081 * 22 21 20 37 37 H 1.08994 * 113.61923 * 105.46863 * 22 21 20 38 38 H 1.09001 * 113.61454 * 270.88447 * 23 22 21 39 39 H 1.08999 * 113.69352 * 139.99031 * 23 22 21 40 40 H 1.09001 * 113.61591 * 254.52933 * 24 21 20 41 41 H 1.09007 * 113.61945 * 25.34971 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0079 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4192 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.1682 1.0972 1.8439 16 6 3.1898 -0.6903 3.3345 17 6 2.7336 -1.9059 3.7982 18 6 3.3724 -2.1458 5.0189 19 6 4.1822 -1.0915 5.2783 20 7 4.0804 -0.2001 4.2625 21 6 4.7984 1.0735 4.1682 22 6 6.1944 1.0427 4.8124 23 6 5.8945 2.4548 5.3426 24 6 4.4042 2.0849 5.2572 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.7080 1.1609 -3.4844 29 1 0.7829 -2.1446 2.0670 30 1 1.4508 -2.5764 0.4747 31 1 2.4964 -2.6021 1.9150 32 1 2.0193 -2.5521 3.3099 33 1 3.2399 -3.0152 5.6458 34 1 4.8069 -0.9794 6.1522 35 1 4.7898 1.4905 3.1611 36 1 6.2965 0.2940 5.5979 37 1 7.0088 1.0120 4.0886 38 1 6.1869 3.2500 4.6568 39 1 6.2447 2.6239 6.3608 40 1 3.7734 2.8956 4.8925 41 1 4.0155 1.6212 6.1639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700872679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:50 Heat of formation + Delta-G solvation = 54.315386 kcal Electronic energy + Delta-G solvation = -21963.509351 eV Core-core repulsion = 18845.964963 eV Total energy + Delta-G solvation = -3117.544388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.37663 -38.73264 -37.94350 -35.35452 -33.00014 -31.09686 -30.06709 -28.09419 -26.47210 -25.83902 -25.19914 -24.85554 -22.57548 -20.87783 -20.23165 -19.27052 -18.38196 -17.03221 -16.38853 -15.73744 -15.47605 -15.04186 -14.87691 -14.31080 -14.04176 -13.85847 -13.33490 -12.90832 -12.75010 -12.50790 -12.33058 -12.30113 -12.10486 -11.96408 -11.57433 -11.35414 -11.06154 -10.84455 -10.73913 -10.64813 -10.59740 -10.47825 -10.22802 -10.14719 -9.19432 -8.98058 -8.45095 -8.41095 -7.94457 -7.53720 -6.05841 -4.13595 1.92010 2.97049 3.02417 3.29598 3.34359 3.36757 3.97805 4.08742 4.30026 4.41825 4.44741 4.72724 4.76242 5.07811 5.23540 5.26481 5.42954 5.46208 5.49258 5.64639 5.67471 5.73082 5.83762 5.86782 5.87670 6.07558 6.19628 6.31242 6.41331 6.48462 6.77445 6.85302 7.03287 7.09413 7.32106 7.45187 7.50280 7.58055 7.73065 8.03226 8.21076 8.53461 8.84355 9.06195 9.52568 10.99513 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.004850 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.267507 B = 5771.306477 C = 6242.252187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.260 3.740 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.575 5.575 13 C 0.067 3.933 14 C 0.572 3.428 15 O -0.564 6.564 16 C -0.030 4.030 17 C -0.171 4.171 18 C -0.212 4.212 19 C 0.000 4.000 20 N -0.399 5.399 21 C 0.101 3.899 22 C -0.148 4.148 23 C -0.136 4.136 24 C -0.145 4.145 25 H 0.011 0.989 26 H 0.094 0.906 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.163 0.837 33 H 0.136 0.864 34 H 0.159 0.841 35 H 0.144 0.856 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.004 -3.020 15.846 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.305 5.305 13 C -0.077 4.077 14 C 0.360 3.640 15 O -0.446 6.446 16 C -0.144 4.144 17 C -0.196 4.196 18 C -0.237 4.237 19 C -0.135 4.135 20 N -0.071 5.071 21 C -0.001 4.001 22 C -0.186 4.186 23 C -0.174 4.174 24 C -0.184 4.184 25 H 0.030 0.970 26 H 0.113 0.887 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.180 0.820 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.162 0.838 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.260 -1.965 15.472 16.806 hybrid contribution 0.252 -0.624 -0.769 1.022 sum 6.512 -2.589 14.703 16.287 Atomic orbital electron populations 1.22096 0.98006 0.99547 1.00821 1.18978 0.90872 0.94490 0.79650 0.91871 1.21283 1.31834 1.13041 0.90227 0.92216 1.24884 0.94935 0.94983 0.98929 1.69873 1.36316 1.22616 1.23847 0.86542 0.79228 0.79594 0.81940 1.20180 1.21179 1.20283 1.47917 1.48165 1.11586 1.22794 1.22285 0.99519 0.83362 1.02505 1.17043 0.79471 0.85412 0.82088 1.90685 1.56508 1.19213 1.78172 1.20514 1.01392 0.97498 0.95010 1.22265 1.03874 0.96283 0.97208 1.20803 1.03204 1.00172 0.99481 1.21721 1.05260 0.91857 0.94636 1.44011 1.31702 1.15733 1.15685 1.23505 0.91531 0.82110 1.02907 1.23408 0.96506 0.97991 1.00655 1.22682 0.96073 0.96763 1.01905 1.23373 0.97284 0.99106 0.98601 0.96998 0.88746 0.95026 0.92642 0.93457 0.90151 0.90712 0.81979 0.84585 0.82400 0.83841 0.89419 0.90364 0.89418 0.90647 0.90253 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.97 37.16 0.33 -3.22 16 2 C 0.26 6.77 2.63 -69.08 -0.18 6.59 16 3 H 0.06 1.90 6.91 -51.93 -0.36 1.54 16 4 C -0.53 -14.36 7.96 -34.44 -0.27 -14.63 16 5 H 0.06 1.61 7.41 -52.49 -0.39 1.22 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.23 11.32 55.43 0.63 -24.60 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.58 -12.90 2.75 -176.81 -0.49 -13.38 16 13 C 0.07 1.19 7.62 59.85 0.46 1.64 16 14 C 0.57 12.82 7.63 -12.85 -0.10 12.72 16 15 O -0.56 -14.20 13.93 5.19 0.07 -14.13 16 16 C -0.03 -0.56 6.73 -81.98 -0.55 -1.11 16 17 C -0.17 -2.68 8.74 -39.12 -0.34 -3.02 16 18 C -0.21 -2.84 10.81 -39.98 -0.43 -3.28 16 19 C 0.00 -0.01 10.35 -16.91 -0.18 -0.18 16 20 N -0.40 -6.32 2.95 -104.95 -0.31 -6.63 16 21 C 0.10 1.46 4.24 -67.12 -0.28 1.18 16 22 C -0.15 -1.57 7.59 -25.92 -0.20 -1.76 16 23 C -0.14 -1.28 8.08 -25.92 -0.21 -1.49 16 24 C -0.15 -1.72 7.79 -25.92 -0.20 -1.92 16 25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 27 H 0.03 0.70 7.67 -51.93 -0.40 0.31 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.05 0.74 7.47 -51.93 -0.39 0.35 16 30 H 0.08 1.49 7.09 -51.93 -0.37 1.12 16 31 H 0.07 1.18 5.11 -51.93 -0.27 0.92 16 32 H 0.16 2.27 4.41 -52.49 -0.23 2.04 16 33 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.16 1.53 7.14 -52.48 -0.37 1.16 16 35 H 0.14 2.53 6.03 -51.93 -0.31 2.22 16 36 H 0.09 0.81 6.64 -51.93 -0.34 0.47 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -31.37 323.31 -8.33 -39.70 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.84 Total: 4.82 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -2.25 Total: -6.80 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.17 Total: -44.62 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.07 Total: -14.13 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.37 -8.33 -39.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700872679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.020 kcal (2) G-P(sol) polarization free energy of solvation -31.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds