Wall clock time and date at job start Thu Apr 9 2020 14:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46678 * 2 1 4 4 C 1.50698 * 109.46562 * 240.00124 * 2 1 3 5 5 H 1.08001 * 119.99414 * 239.99138 * 4 2 1 6 6 C 1.37878 * 120.00278 * 60.00133 * 4 2 1 7 7 N 1.31514 * 119.99914 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99736 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47573 * 60.00119 * 8 6 4 10 10 H 1.48506 * 109.46702 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47088 * 299.99680 * 8 6 4 12 12 N 1.46496 * 109.47310 * 120.00012 * 2 1 3 13 13 C 1.46501 * 120.00206 * 59.99762 * 12 2 1 14 14 C 1.34777 * 119.99831 * 240.00186 * 12 2 1 15 15 O 1.21695 * 120.00263 * 354.61486 * 14 12 2 16 16 C 1.46684 * 119.99727 * 174.90005 * 14 12 2 17 17 C 1.37868 * 126.23165 * 352.65152 * 16 14 12 18 18 C 1.39844 * 107.08312 * 179.84893 * 17 16 14 19 19 C 1.35452 * 107.85952 * 0.42133 * 18 17 16 20 20 N 1.35528 * 108.87636 * 359.73730 * 19 18 17 21 21 C 1.46502 * 125.67821 * 179.97438 * 20 19 18 22 22 C 1.53780 * 113.61153 * 32.33308 * 21 20 19 23 23 C 1.53786 * 87.07865 * 220.01722 * 22 21 20 24 24 C 1.53772 * 113.61481 * 294.83298 * 21 20 19 25 25 H 1.09003 * 109.46663 * 300.00089 * 1 2 3 26 26 H 1.08997 * 109.47155 * 59.99653 * 1 2 3 27 27 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99757 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47108 * 265.46535 * 13 12 2 30 30 H 1.08999 * 109.47019 * 25.45873 * 13 12 2 31 31 H 1.08999 * 109.47338 * 145.46202 * 13 12 2 32 32 H 1.07996 * 126.46320 * 359.96695 * 17 16 14 33 33 H 1.07993 * 126.06725 * 180.15660 * 18 17 16 34 34 H 1.08004 * 125.55794 * 179.71869 * 19 18 17 35 35 H 1.09000 * 112.84507 * 163.63384 * 21 20 19 36 36 H 1.08999 * 113.61884 * 334.56081 * 22 21 20 37 37 H 1.08994 * 113.61923 * 105.46863 * 22 21 20 38 38 H 1.09001 * 113.61454 * 270.88447 * 23 22 21 39 39 H 1.08999 * 113.69352 * 139.99031 * 23 22 21 40 40 H 1.09001 * 113.61591 * 254.52933 * 24 21 20 41 41 H 1.09007 * 113.61945 * 25.34971 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0079 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4192 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.1682 1.0972 1.8439 16 6 3.1898 -0.6903 3.3345 17 6 2.7336 -1.9059 3.7982 18 6 3.3724 -2.1458 5.0189 19 6 4.1822 -1.0915 5.2783 20 7 4.0804 -0.2001 4.2625 21 6 4.7984 1.0735 4.1682 22 6 6.1944 1.0427 4.8124 23 6 5.8945 2.4548 5.3426 24 6 4.4042 2.0849 5.2572 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 0.7080 1.1609 -3.4844 29 1 0.7829 -2.1446 2.0670 30 1 1.4508 -2.5764 0.4747 31 1 2.4964 -2.6021 1.9150 32 1 2.0193 -2.5521 3.3099 33 1 3.2399 -3.0152 5.6458 34 1 4.8069 -0.9794 6.1522 35 1 4.7898 1.4905 3.1611 36 1 6.2965 0.2940 5.5979 37 1 7.0088 1.0120 4.0886 38 1 6.1869 3.2500 4.6568 39 1 6.2447 2.6239 6.3608 40 1 3.7734 2.8956 4.8925 41 1 4.0155 1.6212 6.1639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700872679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:49 Heat of formation + Delta-G solvation = 36.084343 kcal Electronic energy + Delta-G solvation = -21964.299908 eV Core-core repulsion = 18845.964963 eV Total energy + Delta-G solvation = -3118.334945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.55733 -40.28073 -39.03891 -37.19043 -34.94682 -32.40240 -31.69564 -29.55579 -27.99889 -27.32295 -26.72816 -25.86958 -24.20631 -21.97610 -21.69932 -20.69804 -19.51503 -18.53341 -18.26337 -17.40074 -16.75946 -16.56032 -16.31660 -15.97034 -15.26821 -15.10467 -14.73544 -14.50813 -14.14244 -13.89461 -13.74020 -13.56506 -13.40274 -13.24125 -13.00287 -12.92586 -12.76211 -12.70337 -12.30587 -12.22307 -12.13221 -11.82055 -11.56812 -11.49029 -11.23720 -10.72549 -10.51056 -9.59955 -9.42173 -9.04066 -8.16217 -6.33129 0.59889 1.40518 1.43187 1.50714 1.78414 1.92376 2.35412 2.48720 2.57988 3.11485 3.36886 3.55382 3.74647 3.80640 3.85055 4.17365 4.38482 4.42872 4.54254 4.62035 4.63994 4.68213 4.72919 4.73117 4.87038 4.90938 4.93472 4.97228 4.99896 5.03492 5.22712 5.31306 5.37357 5.45484 5.56157 5.64234 5.92165 6.04989 6.12271 6.13881 6.46071 6.73267 6.78025 7.27602 7.43667 8.88199 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.004850 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.267507 B = 5771.306477 C = 6242.252187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.265 3.735 3 H 0.007 0.993 4 C -0.540 4.540 5 H 0.059 0.941 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.967 3.033 9 H -0.260 1.260 10 H -0.281 1.281 11 H -0.279 1.279 12 N -0.586 5.586 13 C 0.067 3.933 14 C 0.559 3.441 15 O -0.612 6.612 16 C -0.085 4.085 17 C -0.157 4.157 18 C -0.216 4.216 19 C 0.021 3.979 20 N -0.404 5.404 21 C 0.077 3.923 22 C -0.132 4.132 23 C -0.121 4.121 24 C -0.142 4.142 25 H 0.017 0.983 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.265 0.735 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.176 0.824 33 H 0.172 0.828 34 H 0.202 0.798 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.087 -5.532 18.404 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.163 3.837 3 H 0.025 0.975 4 C -0.579 4.579 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.792 3.208 9 H -0.185 1.185 10 H -0.207 1.207 11 H -0.205 1.205 12 N -0.314 5.314 13 C -0.075 4.075 14 C 0.351 3.649 15 O -0.498 6.498 16 C -0.197 4.197 17 C -0.183 4.183 18 C -0.239 4.239 19 C -0.114 4.114 20 N -0.077 5.077 21 C -0.025 4.025 22 C -0.170 4.170 23 C -0.159 4.159 24 C -0.180 4.180 25 H 0.037 0.963 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.193 0.807 33 H 0.190 0.810 34 H 0.219 0.781 35 H 0.114 0.886 36 H 0.132 0.868 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.076 0.924 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.331 -4.509 18.042 19.990 hybrid contribution -0.063 0.177 -1.472 1.484 sum 7.268 -4.333 16.570 18.605 Atomic orbital electron populations 1.21873 0.96784 1.00314 0.99923 1.18575 0.91720 0.92086 0.81307 0.97471 1.21515 1.32097 1.13153 0.91102 0.92253 1.25745 0.94980 0.95633 1.01998 1.70017 1.37160 1.23836 1.24571 0.85479 0.78273 0.79098 0.77982 1.18475 1.20669 1.20486 1.47883 1.48443 1.13246 1.21873 1.22515 1.01422 0.80732 1.02809 1.17723 0.78722 0.85073 0.83426 1.90648 1.58259 1.21396 1.79487 1.20101 1.05219 0.99417 0.94994 1.22536 1.03149 0.94789 0.97854 1.21231 1.02517 1.01400 0.98760 1.22526 1.04199 0.90402 0.94316 1.44223 1.31241 1.16394 1.15811 1.23589 0.94681 0.82616 1.01627 1.23414 0.93584 0.99329 1.00688 1.22646 0.93711 0.96001 1.03515 1.23394 0.98863 0.97790 0.97958 0.96343 0.91099 0.93203 0.92542 0.90909 0.90973 0.88514 0.80704 0.81032 0.78125 0.88562 0.86837 0.90612 0.89859 0.87505 0.92418 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.97 71.98 0.65 -5.92 16 2 C 0.26 14.56 2.63 44.25 0.12 14.68 16 3 H 0.01 0.48 6.91 -2.39 -0.02 0.46 16 4 C -0.54 -30.53 7.96 25.60 0.20 -30.32 16 5 H 0.06 3.27 7.41 -2.91 -0.02 3.25 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -53.96 11.32 21.45 0.24 -53.72 16 8 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 9 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 N -0.59 -27.31 2.75 -831.51 -2.29 -29.59 16 13 C 0.07 2.34 7.62 127.77 0.97 3.31 16 14 C 0.56 26.55 7.63 86.45 0.66 27.21 16 15 O -0.61 -33.80 13.93 -4.33 -0.06 -33.86 16 16 C -0.08 -3.14 6.73 40.35 0.27 -2.87 16 17 C -0.16 -4.57 8.74 22.57 0.20 -4.37 16 18 C -0.22 -4.86 10.81 22.01 0.24 -4.62 16 19 C 0.02 0.46 10.35 83.48 0.86 1.32 16 20 N -0.40 -12.42 2.95 -485.96 -1.44 -13.85 16 21 C 0.08 2.25 4.24 45.51 0.19 2.44 16 22 C -0.13 -2.53 7.59 31.12 0.24 -2.29 16 23 C -0.12 -2.03 8.08 31.12 0.25 -1.78 16 24 C -0.14 -3.26 7.79 31.12 0.24 -3.02 16 25 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 27 H 0.05 2.26 7.67 -2.39 -0.02 2.24 16 28 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.07 2.16 7.47 -2.39 -0.02 2.14 16 30 H 0.07 2.63 7.09 -2.39 -0.02 2.61 16 31 H 0.10 2.93 5.11 -2.39 -0.01 2.92 16 32 H 0.18 4.42 4.41 -2.91 -0.01 4.41 16 33 H 0.17 2.64 8.06 -2.91 -0.02 2.61 16 34 H 0.20 2.63 7.14 -2.91 -0.02 2.61 16 35 H 0.10 3.75 6.03 -2.39 -0.01 3.73 16 36 H 0.11 1.58 6.64 -2.39 -0.02 1.56 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.10 1.98 8.04 -2.38 -0.02 1.96 16 Total: -1.00 -74.32 323.31 5.05 -69.27 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 1.03 Total: 20.66 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 5.54 Total: -4.88 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -3.48 Total: -97.17 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.06 Total: -33.86 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -74.32 5.05 -69.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700872679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.353 kcal (2) G-P(sol) polarization free energy of solvation -74.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds