Wall clock time and date at job start Thu Apr 9 2020 14:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46886 * 2 1 4 4 C 1.50702 * 109.46840 * 119.99831 * 2 1 3 5 5 H 1.07993 * 120.00390 * 120.00421 * 4 2 1 6 6 C 1.37878 * 119.99728 * 300.00209 * 4 2 1 7 7 N 1.31511 * 120.00259 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99823 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47473 * 89.99996 * 8 6 4 10 10 H 1.48506 * 109.47462 * 209.99802 * 8 6 4 11 11 H 1.48493 * 109.47228 * 329.99840 * 8 6 4 12 12 N 1.46499 * 109.47335 * 239.99839 * 2 1 3 13 13 C 1.46500 * 120.00063 * 299.99750 * 12 2 1 14 14 C 1.34770 * 119.99894 * 120.00336 * 12 2 1 15 15 O 1.21691 * 120.00261 * 7.68009 * 14 12 2 16 16 C 1.46682 * 120.00042 * 187.68481 * 14 12 2 17 17 C 1.37875 * 126.23201 * 353.39826 * 16 14 12 18 18 C 1.39834 * 107.08642 * 179.84740 * 17 16 14 19 19 C 1.35453 * 107.86508 * 0.41938 * 18 17 16 20 20 N 1.35536 * 108.87061 * 359.74066 * 19 18 17 21 21 C 1.46494 * 125.68029 * 180.02562 * 20 19 18 22 22 C 1.53782 * 113.61382 * 31.72379 * 21 20 19 23 23 C 1.53774 * 87.08351 * 220.01831 * 22 21 20 24 24 C 1.53781 * 87.08151 * 25.43413 * 23 22 21 25 25 H 1.08993 * 109.47760 * 300.00423 * 1 2 3 26 26 H 1.08999 * 109.46916 * 60.00514 * 1 2 3 27 27 H 1.08996 * 109.47258 * 179.97438 * 1 2 3 28 28 H 0.97001 * 120.00136 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47316 * 246.58888 * 13 12 2 30 30 H 1.09004 * 109.46940 * 126.57911 * 13 12 2 31 31 H 1.09003 * 109.46846 * 6.58658 * 13 12 2 32 32 H 1.08007 * 126.45195 * 359.97168 * 17 16 14 33 33 H 1.07997 * 126.06526 * 180.13918 * 18 17 16 34 34 H 1.07995 * 125.56234 * 179.70113 * 19 18 17 35 35 H 1.09000 * 112.85614 * 163.02786 * 21 20 19 36 36 H 1.09000 * 113.61618 * 334.57279 * 22 21 20 37 37 H 1.09000 * 113.61673 * 105.47059 * 22 21 20 38 38 H 1.09000 * 113.62045 * 270.88146 * 23 22 21 39 39 H 1.09009 * 113.69022 * 139.98836 * 23 22 21 40 40 H 1.09002 * 113.61177 * 220.01796 * 24 23 22 41 41 H 1.08994 * 113.69236 * 89.12597 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2393 2.4827 7 7 0.9434 0.8303 2.6033 8 14 2.3222 -1.1194 4.0080 9 1 3.6302 -0.5438 4.4121 10 1 1.3441 -0.9488 5.1124 11 1 2.4878 -2.5651 3.7124 12 7 2.0184 -0.6906 -1.1961 13 6 1.6646 -2.0932 -1.4279 14 6 2.7933 -0.0357 -2.0832 15 8 3.2028 1.0809 -1.8255 16 6 3.1430 -0.6687 -3.3593 17 6 2.8602 -1.9663 -3.7299 18 6 3.3688 -2.1452 -5.0201 19 6 3.9489 -0.9826 -5.4031 20 7 3.8185 -0.0774 -4.4028 21 6 4.3135 1.3012 -4.4281 22 6 4.3104 1.9311 -5.8310 23 6 5.6629 2.5641 -5.4640 24 6 5.8473 1.4043 -4.4712 25 1 -0.3634 0.5138 0.8898 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7093 1.1619 3.4843 29 1 2.5609 -2.7098 -1.3615 30 1 1.2241 -2.1977 -2.4195 31 1 0.9452 -2.4156 -0.6751 32 1 2.3417 -2.7046 -3.1362 33 1 3.3133 -3.0511 -5.6054 34 1 4.4363 -0.8061 -6.3505 35 1 3.8549 1.9298 -3.6648 36 1 4.3745 1.2009 -6.6377 37 1 3.5136 2.6598 -5.9807 38 1 5.5732 3.5390 -4.9848 39 1 6.3850 2.5587 -6.2806 40 1 6.2913 1.7076 -3.5230 41 1 6.3317 0.5295 -4.9047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700872686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:51 Heat of formation + Delta-G solvation = 55.551537 kcal Electronic energy + Delta-G solvation = -21961.153269 eV Core-core repulsion = 18843.662485 eV Total energy + Delta-G solvation = -3117.490784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.36327 -38.73363 -37.94116 -35.36823 -33.00156 -31.09021 -30.06135 -28.09071 -26.52754 -25.83644 -25.19374 -24.84976 -22.57151 -20.86414 -20.21809 -19.27774 -18.38761 -17.03649 -16.39931 -15.69893 -15.49178 -15.03466 -14.90432 -14.32450 -14.06856 -13.81044 -13.36468 -12.90098 -12.75600 -12.54916 -12.40932 -12.24022 -12.09447 -11.94712 -11.57274 -11.34984 -11.04025 -10.86645 -10.74384 -10.66232 -10.57733 -10.40644 -10.22417 -10.16221 -9.17966 -8.99119 -8.45469 -8.41269 -7.94145 -7.53941 -6.05785 -4.13290 1.92542 2.97592 3.03458 3.29032 3.35433 3.37914 3.99683 4.06403 4.29903 4.42285 4.44798 4.72991 4.76228 5.07758 5.23367 5.26922 5.42868 5.46726 5.48982 5.65086 5.67252 5.73084 5.84129 5.85826 5.89143 6.06162 6.20575 6.32514 6.37329 6.46848 6.77117 6.84081 7.03275 7.08698 7.32851 7.45799 7.49730 7.57842 7.73134 8.02800 8.21021 8.53189 8.85100 9.05969 9.53050 10.99620 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023710 B = 0.004820 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.666656 B = 5807.891765 C = 6295.877372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.260 3.740 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.577 5.577 13 C 0.073 3.927 14 C 0.572 3.428 15 O -0.563 6.563 16 C -0.030 4.030 17 C -0.174 4.174 18 C -0.212 4.212 19 C -0.001 4.001 20 N -0.399 5.399 21 C 0.102 3.898 22 C -0.147 4.147 23 C -0.136 4.136 24 C -0.146 4.146 25 H 0.095 0.905 26 H 0.011 0.989 27 H 0.031 0.969 28 H 0.263 0.737 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.166 0.834 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 -2.591 -16.335 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.306 5.306 13 C -0.070 4.070 14 C 0.360 3.640 15 O -0.445 6.445 16 C -0.144 4.144 17 C -0.199 4.199 18 C -0.237 4.237 19 C -0.135 4.135 20 N -0.072 5.072 21 C 0.000 4.000 22 C -0.185 4.185 23 C -0.174 4.174 24 C -0.184 4.184 25 H 0.113 0.887 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.183 0.817 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.161 0.839 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.140 -1.521 -15.987 16.862 hybrid contribution 0.344 -0.630 0.800 1.074 sum 5.485 -2.151 -15.187 16.290 Atomic orbital electron populations 1.22115 0.97999 0.99562 1.00861 1.18995 0.90818 0.94482 0.79720 0.91897 1.21328 1.31693 1.12997 0.90203 0.92195 1.24887 0.94932 0.95001 0.98950 1.69877 1.36452 1.22665 1.23737 0.86485 0.78617 0.79917 0.82309 1.20650 1.21139 1.19870 1.47912 1.48114 1.11617 1.22956 1.22206 1.00567 0.83000 1.01256 1.17028 0.79356 0.85198 0.82374 1.90685 1.54889 1.20469 1.78432 1.20516 1.07240 0.94456 0.92221 1.22447 1.04748 0.95543 0.97211 1.20808 1.07106 0.98047 0.97732 1.21720 1.07155 0.90032 0.94584 1.44005 1.40700 1.10291 1.12198 1.23493 0.95644 0.80912 0.99974 1.23406 0.98643 1.00274 0.96215 1.22681 0.97014 0.98327 0.99401 1.23373 0.95243 0.99013 1.00763 0.88699 0.96974 0.94959 0.92710 0.92896 0.91715 0.90124 0.81661 0.84611 0.82421 0.83907 0.89417 0.90404 0.89427 0.90650 0.90213 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.96 37.16 0.33 -3.21 16 2 C 0.26 6.74 2.57 -69.08 -0.18 6.57 16 3 H 0.06 1.88 6.93 -51.93 -0.36 1.52 16 4 C -0.52 -14.34 8.25 -34.44 -0.28 -14.62 16 5 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.24 11.32 55.43 0.63 -24.61 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.58 -12.90 2.75 -176.80 -0.49 -13.38 16 13 C 0.07 1.29 7.69 59.85 0.46 1.75 16 14 C 0.57 12.83 7.62 -12.85 -0.10 12.73 16 15 O -0.56 -14.19 13.95 5.20 0.07 -14.12 16 16 C -0.03 -0.56 6.83 -81.98 -0.56 -1.12 16 17 C -0.17 -2.74 8.85 -39.12 -0.35 -3.09 16 18 C -0.21 -2.87 10.81 -39.98 -0.43 -3.30 16 19 C 0.00 -0.01 10.38 -16.91 -0.18 -0.18 16 20 N -0.40 -6.34 2.95 -104.95 -0.31 -6.65 16 21 C 0.10 1.46 4.23 -67.12 -0.28 1.18 16 22 C -0.15 -1.54 7.58 -25.92 -0.20 -1.74 16 23 C -0.14 -1.28 8.08 -25.92 -0.21 -1.49 16 24 C -0.15 -1.75 7.79 -25.92 -0.20 -1.96 16 25 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 26 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.03 0.71 6.90 -51.93 -0.36 0.35 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.05 0.87 7.34 -51.93 -0.38 0.49 16 30 H 0.06 0.98 5.50 -51.93 -0.29 0.70 16 31 H 0.08 1.45 6.60 -51.93 -0.34 1.11 16 32 H 0.17 2.32 4.11 -52.48 -0.22 2.11 16 33 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.16 1.54 7.11 -52.49 -0.37 1.16 16 35 H 0.14 2.49 6.04 -51.93 -0.31 2.18 16 36 H 0.09 0.80 6.62 -51.93 -0.34 0.46 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 LS Contribution 322.78 15.07 4.86 4.86 Total: -1.00 -31.47 322.78 -8.30 -39.77 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.78 Total: 4.72 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -2.27 Total: -6.80 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.17 Total: -44.64 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.07 Total: -14.12 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.47 -8.30 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700872686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.324 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds