Wall clock time and date at job start Thu Apr 9 2020 14:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46886 * 2 1 4 4 C 1.50702 * 109.46840 * 119.99831 * 2 1 3 5 5 H 1.07993 * 120.00390 * 120.00421 * 4 2 1 6 6 C 1.37878 * 119.99728 * 300.00209 * 4 2 1 7 7 N 1.31511 * 120.00259 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99823 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47473 * 89.99996 * 8 6 4 10 10 H 1.48506 * 109.47462 * 209.99802 * 8 6 4 11 11 H 1.48493 * 109.47228 * 329.99840 * 8 6 4 12 12 N 1.46499 * 109.47335 * 239.99839 * 2 1 3 13 13 C 1.46500 * 120.00063 * 299.99750 * 12 2 1 14 14 C 1.34770 * 119.99894 * 120.00336 * 12 2 1 15 15 O 1.21691 * 120.00261 * 7.68009 * 14 12 2 16 16 C 1.46682 * 120.00042 * 187.68481 * 14 12 2 17 17 C 1.37875 * 126.23201 * 353.39826 * 16 14 12 18 18 C 1.39834 * 107.08642 * 179.84740 * 17 16 14 19 19 C 1.35453 * 107.86508 * 0.41938 * 18 17 16 20 20 N 1.35536 * 108.87061 * 359.74066 * 19 18 17 21 21 C 1.46494 * 125.68029 * 180.02562 * 20 19 18 22 22 C 1.53782 * 113.61382 * 31.72379 * 21 20 19 23 23 C 1.53774 * 87.08351 * 220.01831 * 22 21 20 24 24 C 1.53781 * 87.08151 * 25.43413 * 23 22 21 25 25 H 1.08993 * 109.47760 * 300.00423 * 1 2 3 26 26 H 1.08999 * 109.46916 * 60.00514 * 1 2 3 27 27 H 1.08996 * 109.47258 * 179.97438 * 1 2 3 28 28 H 0.97001 * 120.00136 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47316 * 246.58888 * 13 12 2 30 30 H 1.09004 * 109.46940 * 126.57911 * 13 12 2 31 31 H 1.09003 * 109.46846 * 6.58658 * 13 12 2 32 32 H 1.08007 * 126.45195 * 359.97168 * 17 16 14 33 33 H 1.07997 * 126.06526 * 180.13918 * 18 17 16 34 34 H 1.07995 * 125.56234 * 179.70113 * 19 18 17 35 35 H 1.09000 * 112.85614 * 163.02786 * 21 20 19 36 36 H 1.09000 * 113.61618 * 334.57279 * 22 21 20 37 37 H 1.09000 * 113.61673 * 105.47059 * 22 21 20 38 38 H 1.09000 * 113.62045 * 270.88146 * 23 22 21 39 39 H 1.09009 * 113.69022 * 139.98836 * 23 22 21 40 40 H 1.09002 * 113.61177 * 220.01796 * 24 23 22 41 41 H 1.08994 * 113.69236 * 89.12597 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2393 2.4827 7 7 0.9434 0.8303 2.6033 8 14 2.3222 -1.1194 4.0080 9 1 3.6302 -0.5438 4.4121 10 1 1.3441 -0.9488 5.1124 11 1 2.4878 -2.5651 3.7124 12 7 2.0184 -0.6906 -1.1961 13 6 1.6646 -2.0932 -1.4279 14 6 2.7933 -0.0357 -2.0832 15 8 3.2028 1.0809 -1.8255 16 6 3.1430 -0.6687 -3.3593 17 6 2.8602 -1.9663 -3.7299 18 6 3.3688 -2.1452 -5.0201 19 6 3.9489 -0.9826 -5.4031 20 7 3.8185 -0.0774 -4.4028 21 6 4.3135 1.3012 -4.4281 22 6 4.3104 1.9311 -5.8310 23 6 5.6629 2.5641 -5.4640 24 6 5.8473 1.4043 -4.4712 25 1 -0.3634 0.5138 0.8898 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7093 1.1619 3.4843 29 1 2.5609 -2.7098 -1.3615 30 1 1.2241 -2.1977 -2.4195 31 1 0.9452 -2.4156 -0.6751 32 1 2.3417 -2.7046 -3.1362 33 1 3.3133 -3.0511 -5.6054 34 1 4.4363 -0.8061 -6.3505 35 1 3.8549 1.9298 -3.6648 36 1 4.3745 1.2009 -6.6377 37 1 3.5136 2.6598 -5.9807 38 1 5.5732 3.5390 -4.9848 39 1 6.3850 2.5587 -6.2806 40 1 6.2913 1.7076 -3.5230 41 1 6.3317 0.5295 -4.9047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700872686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:51 Heat of formation + Delta-G solvation = 37.234340 kcal Electronic energy + Delta-G solvation = -21961.947562 eV Core-core repulsion = 18843.662485 eV Total energy + Delta-G solvation = -3118.285077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.54615 -40.28290 -39.03585 -37.20051 -34.94918 -32.39911 -31.68916 -29.54837 -28.05049 -27.31398 -26.72826 -25.86492 -24.20147 -21.95797 -21.69016 -20.71370 -19.51874 -18.54957 -18.24772 -17.38586 -16.78301 -16.57044 -16.31329 -15.96781 -15.33232 -15.02016 -14.77127 -14.53957 -14.15088 -13.95505 -13.70470 -13.53188 -13.40328 -13.24057 -12.98414 -12.94386 -12.77872 -12.71736 -12.28131 -12.22433 -12.11320 -11.76761 -11.56526 -11.49796 -11.22137 -10.72835 -10.51908 -9.61168 -9.41011 -9.04462 -8.16247 -6.32990 0.60094 1.40398 1.41716 1.52101 1.78715 1.92643 2.35994 2.48303 2.57986 3.11483 3.36855 3.55292 3.74483 3.80691 3.84797 4.17304 4.36760 4.43663 4.54102 4.61063 4.64056 4.65966 4.71441 4.75322 4.86511 4.90853 4.93434 4.96634 4.99692 5.03543 5.23561 5.31368 5.36832 5.44849 5.58313 5.64928 5.92409 6.05075 6.12381 6.14412 6.46454 6.73642 6.78092 7.27648 7.43717 8.88248 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023710 B = 0.004820 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.666656 B = 5807.891765 C = 6295.877372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.265 3.735 3 H 0.007 0.993 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.966 3.034 9 H -0.284 1.284 10 H -0.277 1.277 11 H -0.261 1.261 12 N -0.587 5.587 13 C 0.073 3.927 14 C 0.560 3.440 15 O -0.612 6.612 16 C -0.084 4.084 17 C -0.161 4.161 18 C -0.217 4.217 19 C 0.020 3.980 20 N -0.405 5.405 21 C 0.077 3.923 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.144 4.144 25 H 0.071 0.929 26 H 0.018 0.982 27 H 0.051 0.949 28 H 0.265 0.735 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.179 0.821 33 H 0.172 0.828 34 H 0.202 0.798 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.799 -4.980 -18.997 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.163 3.837 3 H 0.025 0.975 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.791 3.209 9 H -0.210 1.210 10 H -0.202 1.202 11 H -0.185 1.185 12 N -0.316 5.316 13 C -0.069 4.069 14 C 0.351 3.649 15 O -0.497 6.497 16 C -0.197 4.197 17 C -0.187 4.187 18 C -0.240 4.240 19 C -0.115 4.115 20 N -0.077 5.077 21 C -0.025 4.025 22 C -0.169 4.169 23 C -0.159 4.159 24 C -0.182 4.182 25 H 0.089 0.911 26 H 0.037 0.963 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.095 0.905 32 H 0.196 0.804 33 H 0.189 0.811 34 H 0.219 0.781 35 H 0.115 0.885 36 H 0.131 0.869 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.998 -3.940 -18.662 19.995 hybrid contribution 0.109 0.127 1.545 1.554 sum 6.107 -3.814 -17.117 18.570 Atomic orbital electron populations 1.21890 0.96679 1.00421 0.99978 1.18595 0.91741 0.92055 0.81314 0.97495 1.21550 1.31958 1.13073 0.91122 0.92355 1.25737 0.94987 0.95656 1.01983 1.70016 1.37247 1.23851 1.24502 0.85435 0.77755 0.79231 0.78473 1.20985 1.20229 1.18516 1.47880 1.48363 1.13296 1.22023 1.22441 1.01250 0.80403 1.02780 1.17705 0.78612 0.84788 0.83781 1.90648 1.56760 1.22642 1.79666 1.20106 1.11668 0.96032 0.91910 1.22713 1.03438 0.94219 0.98312 1.21234 1.06449 0.99497 0.96809 1.22524 1.05057 0.89032 0.94844 1.44221 1.40352 1.11014 1.12135 1.23585 0.96896 0.80415 1.01554 1.23405 0.99104 1.00318 0.94031 1.22645 0.97043 0.96987 0.99184 1.23402 0.93311 1.00828 1.00679 0.91075 0.96257 0.93037 0.92553 0.91569 0.88713 0.90471 0.80417 0.81077 0.78143 0.88479 0.86850 0.90398 0.89807 0.87550 0.92606 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.55 8.96 71.98 0.64 -5.91 16 2 C 0.26 14.50 2.57 44.25 0.11 14.62 16 3 H 0.01 0.46 6.93 -2.38 -0.02 0.44 16 4 C -0.54 -30.45 8.25 25.60 0.21 -30.24 16 5 H 0.06 3.23 7.65 -2.91 -0.02 3.21 16 6 C 0.02 0.90 5.30 84.66 0.45 1.34 16 7 N -0.92 -53.91 11.32 21.45 0.24 -53.67 16 8 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 9 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 12 N -0.59 -27.29 2.75 -831.50 -2.29 -29.58 16 13 C 0.07 2.54 7.69 127.77 0.98 3.52 16 14 C 0.56 26.56 7.62 86.45 0.66 27.22 16 15 O -0.61 -33.76 13.95 -4.32 -0.06 -33.82 16 16 C -0.08 -3.15 6.83 40.35 0.28 -2.87 16 17 C -0.16 -4.70 8.85 22.57 0.20 -4.50 16 18 C -0.22 -4.91 10.81 22.01 0.24 -4.67 16 19 C 0.02 0.46 10.38 83.48 0.87 1.32 16 20 N -0.40 -12.45 2.95 -485.95 -1.44 -13.88 16 21 C 0.08 2.26 4.23 45.52 0.19 2.45 16 22 C -0.13 -2.45 7.58 31.12 0.24 -2.21 16 23 C -0.12 -2.03 8.08 31.12 0.25 -1.78 16 24 C -0.14 -3.39 7.79 31.12 0.24 -3.14 16 25 H 0.07 3.90 6.07 -2.39 -0.01 3.88 16 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 2.31 6.90 -2.39 -0.02 2.29 16 28 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.07 2.11 7.34 -2.39 -0.02 2.09 16 30 H 0.10 2.71 5.50 -2.39 -0.01 2.70 16 31 H 0.08 2.72 6.60 -2.39 -0.02 2.70 16 32 H 0.18 4.52 4.11 -2.91 -0.01 4.51 16 33 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.20 2.65 7.11 -2.91 -0.02 2.63 16 35 H 0.10 3.74 6.04 -2.39 -0.01 3.72 16 36 H 0.11 1.54 6.62 -2.39 -0.02 1.53 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.10 2.03 8.05 -2.39 -0.02 2.01 16 Total: -1.00 -74.42 322.78 5.08 -69.34 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 1.03 Total: 20.38 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 5.56 Total: -4.85 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -3.48 Total: -97.13 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.06 Total: -33.82 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -74.42 5.08 -69.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700872686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.573 kcal (2) G-P(sol) polarization free energy of solvation -74.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds