Wall clock time and date at job start Thu Apr 9 2020 14:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47440 * 2 1 4 4 C 1.46507 * 119.99766 * 264.09300 * 3 2 1 5 5 C 1.50697 * 109.46868 * 269.99681 * 4 3 2 6 6 H 1.07997 * 120.00401 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99768 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99955 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99962 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47288 * 89.99917 * 9 7 5 11 11 H 1.48501 * 109.47138 * 209.99953 * 9 7 5 12 12 H 1.48506 * 109.47274 * 330.00011 * 9 7 5 13 13 C 1.34778 * 120.00223 * 84.08989 * 3 2 1 14 14 O 1.21687 * 120.00317 * 183.92183 * 13 3 2 15 15 C 1.46680 * 119.99640 * 3.92754 * 13 3 2 16 16 C 1.37869 * 126.23525 * 337.47123 * 15 13 3 17 17 C 1.39833 * 107.08925 * 180.24165 * 16 15 13 18 18 C 1.35455 * 107.86173 * 359.75879 * 17 16 15 19 19 N 1.35529 * 108.87353 * 0.02562 * 18 17 16 20 20 C 1.46495 * 125.68336 * 179.97438 * 19 18 17 21 21 C 1.53786 * 113.61281 * 55.11684 * 20 19 18 22 22 C 1.53777 * 87.08013 * 220.01996 * 21 20 19 23 23 C 1.53773 * 87.17377 * 25.39286 * 22 21 20 24 24 H 1.09004 * 109.46975 * 307.83299 * 1 2 3 25 25 H 1.09000 * 109.46857 * 67.82858 * 1 2 3 26 26 H 1.08995 * 109.47294 * 187.83066 * 1 2 3 27 27 H 1.09000 * 109.46817 * 239.99483 * 2 1 3 28 28 H 1.09002 * 109.46817 * 119.99910 * 2 1 3 29 29 H 1.09000 * 109.46843 * 29.99804 * 4 3 2 30 30 H 1.09000 * 109.46306 * 149.99940 * 4 3 2 31 31 H 0.96996 * 119.99869 * 180.02562 * 8 7 5 32 32 H 1.08009 * 126.45557 * 359.97438 * 16 15 13 33 33 H 1.07996 * 126.07314 * 179.74308 * 17 16 15 34 34 H 1.07995 * 125.56516 * 179.97438 * 18 17 16 35 35 H 1.08997 * 112.91133 * 186.36965 * 20 19 18 36 36 H 1.09007 * 113.60830 * 105.47548 * 21 20 19 37 37 H 1.08994 * 113.61735 * 334.57659 * 21 20 19 38 38 H 1.09008 * 113.61170 * 139.97983 * 22 21 20 39 39 H 1.08996 * 113.61773 * 270.79522 * 22 21 20 40 40 H 1.09002 * 113.61588 * 89.15875 * 23 22 21 41 41 H 1.09001 * 113.61774 * 220.05684 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3857 2.0282 -1.2621 5 6 3.8441 1.7789 -1.5485 6 1 4.4379 1.1965 -0.8597 7 6 4.4204 2.2946 -2.6901 8 7 3.6974 3.0043 -3.5287 9 14 6.2279 1.9850 -3.0455 10 1 6.3700 0.7363 -3.8366 11 1 6.7830 3.1258 -3.8172 12 1 6.9675 1.8467 -1.7652 13 6 2.1298 2.0566 1.1610 14 8 2.4671 3.2258 1.1548 15 6 1.8446 1.3823 2.4320 16 6 1.0643 0.2583 2.6010 17 6 1.0593 -0.0367 3.9679 18 6 1.8242 0.8885 4.5954 19 7 2.3094 1.7548 3.6730 20 6 3.1793 2.9003 3.9509 21 6 4.4634 2.5285 4.7110 22 6 4.2649 3.8210 5.5201 23 6 2.7659 3.7019 5.1986 24 1 -0.3633 0.6304 0.8117 25 1 -0.3633 0.3878 -0.9517 26 1 -0.3633 -1.0180 0.1400 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7812 1.6171 -2.0705 30 1 2.2087 3.1010 -1.1852 31 1 4.1027 3.3667 -4.3319 32 1 0.5499 -0.2886 1.8246 33 1 0.5380 -0.8565 4.4396 34 1 2.0154 0.9297 5.6575 35 1 3.3560 3.5218 3.0730 36 1 5.3576 2.5366 4.0876 37 1 4.3704 1.6211 5.3076 38 1 4.4941 3.7120 6.5803 39 1 4.7396 4.6939 5.0721 40 1 2.2079 3.1160 5.9289 41 1 2.2915 4.6559 4.9684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700873741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:53 Heat of formation + Delta-G solvation = 51.700260 kcal Electronic energy + Delta-G solvation = -22053.822058 eV Core-core repulsion = 18936.164270 eV Total energy + Delta-G solvation = -3117.657788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.38281 -38.75849 -37.88076 -35.46129 -32.91839 -31.12810 -30.29204 -29.06376 -26.84205 -25.82232 -24.91722 -23.33109 -22.94571 -20.94865 -20.80027 -19.34163 -18.30543 -17.07602 -16.42480 -15.72212 -15.43062 -15.22970 -14.72267 -14.48922 -14.22687 -13.84181 -13.62211 -12.95323 -12.76136 -12.66015 -12.33441 -12.22839 -11.97111 -11.93726 -11.64191 -11.46863 -11.19662 -11.04200 -10.85848 -10.78886 -10.60555 -10.57061 -10.44395 -10.10050 -9.64010 -9.00480 -8.43647 -8.40330 -7.89449 -7.60652 -6.04179 -4.08981 1.97649 2.96842 3.06357 3.29909 3.36238 3.40759 3.93733 4.08778 4.32849 4.44936 4.47605 4.74988 4.78532 5.07581 5.20805 5.30673 5.38785 5.47241 5.48084 5.51735 5.64174 5.69884 5.71436 5.80316 5.83271 5.83995 5.90810 6.11970 6.22746 6.25967 6.39691 6.45461 6.62156 6.98761 7.18654 7.36235 7.45148 7.53085 7.58460 7.92822 8.23471 8.42808 8.89627 9.08914 9.55992 11.03775 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.005994 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.473700 B = 4670.382793 C = 5802.162993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.092 3.908 3 N -0.580 5.580 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.575 3.425 14 O -0.553 6.553 15 C -0.029 4.029 16 C -0.180 4.180 17 C -0.212 4.212 18 C -0.002 4.002 19 N -0.398 5.398 20 C 0.097 3.903 21 C -0.148 4.148 22 C -0.136 4.136 23 C -0.145 4.145 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.168 0.832 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.146 0.854 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 -5.043 16.490 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.032 4.032 3 N -0.310 5.310 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.363 3.637 14 O -0.434 6.434 15 C -0.143 4.143 16 C -0.205 4.205 17 C -0.237 4.237 18 C -0.136 4.136 19 N -0.070 5.070 20 C -0.005 4.005 21 C -0.187 4.187 22 C -0.174 4.174 23 C -0.183 4.183 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.185 0.815 33 H 0.154 0.846 34 H 0.175 0.825 35 H 0.163 0.837 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.626 -4.012 16.304 17.177 hybrid contribution 0.974 -0.264 -0.249 1.039 sum -2.652 -4.276 16.055 16.825 Atomic orbital electron populations 1.22444 0.96897 1.01721 1.02844 1.21874 0.93352 0.84299 1.03660 1.47963 1.62218 1.13021 1.07760 1.19335 0.95384 0.94499 0.77982 1.21441 0.95114 1.33506 1.06465 0.92459 1.24927 0.98230 0.94913 0.95980 1.69935 1.36174 1.34977 1.12225 0.86504 0.84924 0.77756 0.78282 1.20572 1.21078 1.19963 1.16982 0.78328 0.85827 0.82555 1.90703 1.49398 1.16230 1.87031 1.20547 1.06723 1.00541 0.86475 1.22417 1.03246 0.97328 0.97478 1.20780 1.06293 1.02359 0.94222 1.21696 1.02756 0.94232 0.94892 1.43999 1.35905 1.21632 1.05497 1.23574 0.89789 0.86965 1.00124 1.23420 0.97974 0.98515 0.98740 1.22681 0.96013 0.98208 1.00535 1.23406 0.97284 1.00939 0.96629 0.91623 0.92010 0.91733 0.89937 0.89992 0.94729 0.93659 0.92710 0.81518 0.84649 0.82490 0.83694 0.90286 0.89527 0.90653 0.89405 0.89520 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 8.42 37.16 0.31 -2.25 16 2 C 0.09 1.59 5.65 -4.04 -0.02 1.57 16 3 N -0.58 -12.92 2.47 -176.60 -0.44 -13.35 16 4 C 0.25 6.57 5.16 -5.19 -0.03 6.54 16 5 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 13 C 0.58 13.02 7.50 -12.85 -0.10 12.92 16 14 O -0.55 -14.30 14.35 5.20 0.07 -14.23 16 15 C -0.03 -0.53 6.55 -81.98 -0.54 -1.07 16 16 C -0.18 -2.80 7.57 -39.12 -0.30 -3.10 16 17 C -0.21 -2.86 10.81 -39.98 -0.43 -3.29 16 18 C 0.00 -0.02 9.97 -16.91 -0.17 -0.19 16 19 N -0.40 -6.42 2.96 -104.86 -0.31 -6.73 16 20 C 0.10 1.46 4.43 -67.03 -0.30 1.16 16 21 C -0.15 -1.78 7.73 -25.92 -0.20 -1.98 16 22 C -0.14 -1.34 8.08 -25.93 -0.21 -1.55 16 23 C -0.14 -1.63 7.67 -25.83 -0.20 -1.83 16 24 H 0.06 0.96 6.34 -51.93 -0.33 0.63 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.71 8.11 -51.93 -0.42 0.29 16 27 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 28 H 0.08 1.31 5.22 -51.93 -0.27 1.04 16 29 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.05 1.35 7.37 -51.93 -0.38 0.97 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.17 2.33 3.22 -52.48 -0.17 2.16 16 33 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.16 1.56 7.63 -52.49 -0.40 1.16 16 35 H 0.15 2.67 5.91 -51.93 -0.31 2.36 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.95 7.73 -51.93 -0.40 0.55 16 38 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.87 7.11 -51.93 -0.37 0.50 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 327.94 15.07 4.94 4.94 Total: -1.00 -32.98 327.94 -8.58 -41.55 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.97 Total: 3.61 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.59 Total: -6.82 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.01 Total: -46.01 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.07 Total: -14.23 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.98 -8.58 -41.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700873741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.251 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds