Wall clock time and date at job start Thu Apr 9 2020 14:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47440 * 2 1 4 4 C 1.46507 * 119.99766 * 264.09300 * 3 2 1 5 5 C 1.50697 * 109.46868 * 269.99681 * 4 3 2 6 6 H 1.07997 * 120.00401 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99768 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99955 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99962 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47288 * 89.99917 * 9 7 5 11 11 H 1.48501 * 109.47138 * 209.99953 * 9 7 5 12 12 H 1.48506 * 109.47274 * 330.00011 * 9 7 5 13 13 C 1.34778 * 120.00223 * 84.08989 * 3 2 1 14 14 O 1.21687 * 120.00317 * 183.92183 * 13 3 2 15 15 C 1.46680 * 119.99640 * 3.92754 * 13 3 2 16 16 C 1.37869 * 126.23525 * 337.47123 * 15 13 3 17 17 C 1.39833 * 107.08925 * 180.24165 * 16 15 13 18 18 C 1.35455 * 107.86173 * 359.75879 * 17 16 15 19 19 N 1.35529 * 108.87353 * 0.02562 * 18 17 16 20 20 C 1.46495 * 125.68336 * 179.97438 * 19 18 17 21 21 C 1.53786 * 113.61281 * 55.11684 * 20 19 18 22 22 C 1.53777 * 87.08013 * 220.01996 * 21 20 19 23 23 C 1.53773 * 87.17377 * 25.39286 * 22 21 20 24 24 H 1.09004 * 109.46975 * 307.83299 * 1 2 3 25 25 H 1.09000 * 109.46857 * 67.82858 * 1 2 3 26 26 H 1.08995 * 109.47294 * 187.83066 * 1 2 3 27 27 H 1.09000 * 109.46817 * 239.99483 * 2 1 3 28 28 H 1.09002 * 109.46817 * 119.99910 * 2 1 3 29 29 H 1.09000 * 109.46843 * 29.99804 * 4 3 2 30 30 H 1.09000 * 109.46306 * 149.99940 * 4 3 2 31 31 H 0.96996 * 119.99869 * 180.02562 * 8 7 5 32 32 H 1.08009 * 126.45557 * 359.97438 * 16 15 13 33 33 H 1.07996 * 126.07314 * 179.74308 * 17 16 15 34 34 H 1.07995 * 125.56516 * 179.97438 * 18 17 16 35 35 H 1.08997 * 112.91133 * 186.36965 * 20 19 18 36 36 H 1.09007 * 113.60830 * 105.47548 * 21 20 19 37 37 H 1.08994 * 113.61735 * 334.57659 * 21 20 19 38 38 H 1.09008 * 113.61170 * 139.97983 * 22 21 20 39 39 H 1.08996 * 113.61773 * 270.79522 * 22 21 20 40 40 H 1.09002 * 113.61588 * 89.15875 * 23 22 21 41 41 H 1.09001 * 113.61774 * 220.05684 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3857 2.0282 -1.2621 5 6 3.8441 1.7789 -1.5485 6 1 4.4379 1.1965 -0.8597 7 6 4.4204 2.2946 -2.6901 8 7 3.6974 3.0043 -3.5287 9 14 6.2279 1.9850 -3.0455 10 1 6.3700 0.7363 -3.8366 11 1 6.7830 3.1258 -3.8172 12 1 6.9675 1.8467 -1.7652 13 6 2.1298 2.0566 1.1610 14 8 2.4671 3.2258 1.1548 15 6 1.8446 1.3823 2.4320 16 6 1.0643 0.2583 2.6010 17 6 1.0593 -0.0367 3.9679 18 6 1.8242 0.8885 4.5954 19 7 2.3094 1.7548 3.6730 20 6 3.1793 2.9003 3.9509 21 6 4.4634 2.5285 4.7110 22 6 4.2649 3.8210 5.5201 23 6 2.7659 3.7019 5.1986 24 1 -0.3633 0.6304 0.8117 25 1 -0.3633 0.3878 -0.9517 26 1 -0.3633 -1.0180 0.1400 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.7812 1.6171 -2.0705 30 1 2.2087 3.1010 -1.1852 31 1 4.1027 3.3667 -4.3319 32 1 0.5499 -0.2886 1.8246 33 1 0.5380 -0.8565 4.4396 34 1 2.0154 0.9297 5.6575 35 1 3.3560 3.5218 3.0730 36 1 5.3576 2.5366 4.0876 37 1 4.3704 1.6211 5.3076 38 1 4.4941 3.7120 6.5803 39 1 4.7396 4.6939 5.0721 40 1 2.2079 3.1160 5.9289 41 1 2.2915 4.6559 4.9684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700873741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:53 Heat of formation + Delta-G solvation = 31.988616 kcal Electronic energy + Delta-G solvation = -22054.676819 eV Core-core repulsion = 18936.164270 eV Total energy + Delta-G solvation = -3118.512549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.58912 -40.28227 -39.02951 -37.15774 -35.04655 -32.51959 -31.69131 -30.46238 -28.75345 -26.74268 -25.93689 -25.27558 -24.41435 -22.36757 -21.90291 -20.59754 -19.48457 -18.71890 -18.38760 -17.28585 -16.90141 -16.55608 -16.27164 -16.04787 -15.59484 -15.28249 -14.85424 -14.40663 -14.24162 -13.92167 -13.66558 -13.55866 -13.33631 -13.25597 -13.09732 -12.98539 -12.76921 -12.66022 -12.38466 -12.23999 -12.01092 -11.97333 -11.76916 -11.56754 -11.49159 -10.74125 -10.67741 -9.60707 -9.47461 -9.04074 -8.26001 -6.41785 0.64340 1.33076 1.36022 1.46399 1.73963 1.95037 2.30642 2.45789 2.52880 3.02706 3.35945 3.54561 3.69641 3.79458 3.83730 4.09573 4.19488 4.32535 4.42258 4.56039 4.60371 4.61433 4.62954 4.73195 4.85965 4.89753 4.91862 4.94654 4.98952 5.00484 5.15064 5.24992 5.32089 5.36611 5.43146 5.53530 5.79375 5.98958 6.01616 6.13247 6.46808 6.65067 6.72037 7.22119 7.39623 8.81036 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.016271 B = 0.005994 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.473700 B = 4670.382793 C = 5802.162993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.088 3.912 3 N -0.588 5.588 4 C 0.264 3.736 5 C -0.545 4.545 6 H 0.049 0.951 7 C 0.010 3.990 8 N -0.926 5.926 9 Si 0.969 3.031 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.275 1.275 13 C 0.565 3.435 14 O -0.607 6.607 15 C -0.085 4.085 16 C -0.163 4.163 17 C -0.215 4.215 18 C 0.019 3.981 19 N -0.404 5.404 20 C 0.071 3.929 21 C -0.141 4.141 22 C -0.121 4.121 23 C -0.131 4.131 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.027 0.973 30 H -0.002 1.002 31 H 0.269 0.731 32 H 0.181 0.819 33 H 0.173 0.827 34 H 0.201 0.799 35 H 0.095 0.905 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.970 -7.543 19.488 21.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.034 4.034 3 N -0.317 5.317 4 C 0.143 3.857 5 C -0.584 4.584 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.793 3.207 10 H -0.185 1.185 11 H -0.203 1.203 12 H -0.200 1.200 13 C 0.356 3.644 14 O -0.491 6.491 15 C -0.197 4.197 16 C -0.188 4.188 17 C -0.238 4.238 18 C -0.116 4.116 19 N -0.076 5.076 20 C -0.031 4.031 21 C -0.179 4.179 22 C -0.159 4.159 23 C -0.169 4.169 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.127 0.873 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.045 0.955 30 H 0.016 0.984 31 H 0.078 0.922 32 H 0.198 0.802 33 H 0.191 0.809 34 H 0.218 0.782 35 H 0.113 0.887 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.100 0.900 40 H 0.130 0.870 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.564 -6.551 19.300 20.691 hybrid contribution 0.888 0.507 -1.131 1.525 sum -2.676 -6.044 18.170 19.335 Atomic orbital electron populations 1.22365 0.94151 1.04271 1.02045 1.22176 0.95552 0.81516 1.04189 1.47960 1.62551 1.14821 1.06404 1.18779 0.94757 0.92120 0.80048 1.21648 0.96042 1.33940 1.06749 0.93291 1.25862 1.03218 0.94303 0.95565 1.70052 1.38315 1.35516 1.12686 0.85396 0.78665 0.78493 0.78134 1.18516 1.20282 1.20037 1.17673 0.77230 0.85444 0.84078 1.90657 1.51880 1.18601 1.87967 1.20114 1.10962 1.02871 0.85798 1.22691 1.01282 0.95545 0.99330 1.21222 1.06349 1.03338 0.92920 1.22506 1.00438 0.92404 0.96258 1.44200 1.36027 1.22234 1.05171 1.23653 0.92188 0.87417 0.99824 1.23442 0.95485 1.00598 0.98421 1.22642 0.94580 0.96688 1.01971 1.23413 0.98558 1.00146 0.94818 0.92038 0.93244 0.87291 0.90500 0.88208 0.95475 0.98401 0.92248 0.80231 0.80933 0.78218 0.88719 0.92103 0.87415 0.87349 0.90004 0.87008 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.67 8.42 71.98 0.61 -4.06 16 2 C 0.09 3.06 5.65 86.38 0.49 3.55 16 3 N -0.59 -27.84 2.47 -830.86 -2.05 -29.89 16 4 C 0.26 15.12 5.16 85.63 0.44 15.57 16 5 C -0.55 -32.88 9.39 25.60 0.24 -32.64 16 6 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 7 C 0.01 0.58 5.46 84.66 0.46 1.04 16 8 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 9 Si 0.97 46.00 29.54 68.60 2.03 48.02 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 C 0.56 27.36 7.50 86.45 0.65 28.01 16 14 O -0.61 -34.53 14.35 -4.31 -0.06 -34.60 16 15 C -0.08 -3.20 6.55 40.35 0.26 -2.94 16 16 C -0.16 -4.74 7.57 22.57 0.17 -4.57 16 17 C -0.21 -4.86 10.81 22.01 0.24 -4.62 16 18 C 0.02 0.42 9.97 83.48 0.83 1.26 16 19 N -0.40 -12.72 2.96 -485.65 -1.44 -14.15 16 20 C 0.07 2.17 4.43 45.58 0.20 2.37 16 21 C -0.14 -3.24 7.73 31.12 0.24 -2.99 16 22 C -0.12 -2.13 8.08 31.12 0.25 -1.88 16 23 C -0.13 -2.75 7.67 31.18 0.24 -2.51 16 24 H 0.06 1.75 6.34 -2.38 -0.02 1.74 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.11 2.03 8.11 -2.39 -0.02 2.01 16 27 H 0.08 2.73 8.03 -2.39 -0.02 2.71 16 28 H 0.10 3.11 5.22 -2.39 -0.01 3.10 16 29 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 30 H 0.00 -0.14 7.37 -2.39 -0.02 -0.16 16 31 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.18 4.56 3.22 -2.91 -0.01 4.55 16 33 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.20 2.71 7.63 -2.91 -0.02 2.69 16 35 H 0.09 3.87 5.91 -2.39 -0.01 3.85 16 36 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.11 1.99 7.73 -2.39 -0.02 1.97 16 38 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.11 1.77 7.11 -2.39 -0.02 1.75 16 41 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -78.97 327.94 5.11 -73.86 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.02 Total: 18.14 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 5.33 Total: -4.42 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -3.21 Total: -101.00 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -0.06 Total: -34.60 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -78.97 5.11 -73.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700873741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.848 kcal (2) G-P(sol) polarization free energy of solvation -78.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds