Wall clock time and date at job start Thu Apr 9 2020 14:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46838 * 2 1 4 4 C 1.52995 * 109.47516 * 239.99837 * 2 1 3 5 5 C 1.50699 * 109.47539 * 175.45794 * 4 2 1 6 6 H 1.08005 * 119.99471 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00292 * 180.02562 * 5 4 2 8 8 N 1.31503 * 119.99800 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99819 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47305 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47167 * 120.00490 * 9 7 5 12 12 H 1.48510 * 109.46976 * 240.00148 * 9 7 5 13 13 N 1.46901 * 109.47047 * 119.99485 * 2 1 3 14 14 C 1.46752 * 110.99519 * 91.97680 * 13 2 1 15 15 C 1.53432 * 108.60549 * 285.44442 * 14 13 2 16 16 O 1.43136 * 107.89429 * 296.76059 * 15 14 13 17 17 C 1.36147 * 116.67384 * 45.37600 * 16 15 14 18 18 C 1.38776 * 118.74591 * 165.22319 * 17 16 15 19 19 C 1.38177 * 120.20357 * 179.51246 * 18 17 16 20 20 C 1.38253 * 120.02715 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.93803 * 180.02562 * 20 19 18 22 22 N 1.46901 * 109.47123 * 90.00098 * 21 20 19 23 23 C 1.38058 * 120.11992 * 0.10111 * 20 19 18 24 24 C 1.38972 * 121.37674 * 344.93551 * 17 16 15 25 25 H 1.08998 * 109.47088 * 51.52318 * 1 2 3 26 26 H 1.09000 * 109.46523 * 171.52043 * 1 2 3 27 27 H 1.08997 * 109.47156 * 291.51398 * 1 2 3 28 28 H 1.08996 * 109.47307 * 295.46398 * 4 2 1 29 29 H 1.09001 * 109.46875 * 55.45947 * 4 2 1 30 30 H 0.97002 * 120.00142 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.62266 * 45.18847 * 14 13 2 32 32 H 1.09004 * 109.61366 * 165.71809 * 14 13 2 33 33 H 1.08997 * 109.77371 * 177.15400 * 15 14 13 34 34 H 1.09005 * 109.77170 * 56.35647 * 15 14 13 35 35 H 1.08002 * 119.89449 * 359.54365 * 18 17 16 36 36 H 1.08000 * 119.98359 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47049 * 210.00274 * 21 20 19 38 38 H 1.08997 * 109.47373 * 330.00200 * 21 20 19 39 39 H 1.00904 * 110.99321 * 56.04584 * 22 21 20 40 40 H 1.00898 * 110.99857 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.87866 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5429 -0.6246 -1.3067 6 1 4.0804 -0.1013 -0.5297 7 6 4.2315 -1.2040 -2.3512 8 7 3.5769 -1.8406 -3.2975 9 14 6.0944 -1.0847 -2.4220 10 1 6.5866 -0.3215 -1.2471 11 1 6.6788 -2.4497 -2.4065 12 1 6.4986 -0.3873 -3.6693 13 7 2.0197 -0.6924 1.1995 14 6 2.2395 -2.1182 0.9307 15 6 0.8761 -2.8180 0.8553 16 8 0.2509 -2.7024 2.1377 17 6 0.2932 -1.4772 2.7300 18 6 -0.5473 -1.2265 3.8054 19 6 -0.5222 0.0031 4.4354 20 6 0.3416 0.9886 3.9949 21 6 0.3678 2.3286 4.6838 22 7 1.3500 2.2987 5.7758 23 6 1.1790 0.7478 2.9240 24 6 1.1597 -0.4869 2.2830 25 1 -0.3633 0.6394 -0.8045 26 1 -0.3632 -1.0165 -0.1515 27 1 -0.3633 0.3769 0.9560 28 1 1.7447 -1.7697 -1.2095 29 1 1.6119 -0.2565 -2.1373 30 1 4.0614 -2.2486 -4.0322 31 1 2.7639 -2.2353 -0.0177 32 1 2.8310 -2.5553 1.7352 33 1 1.0149 -3.8700 0.6060 34 1 0.2564 -2.3376 0.0982 35 1 -1.2228 -1.9949 4.1513 36 1 -1.1775 0.1942 5.2723 37 1 0.6455 3.1007 3.9663 38 1 -0.6198 2.5480 5.0894 39 1 2.2619 2.0339 5.4346 40 1 1.3867 3.1867 6.2535 41 1 1.8525 1.5203 2.5834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700968683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:55 Heat of formation + Delta-G solvation = 7.856941 kcal Electronic energy + Delta-G solvation = -22376.378630 eV Core-core repulsion = 19256.819653 eV Total energy + Delta-G solvation = -3119.558977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08843 -37.88367 -36.87368 -34.38500 -33.04796 -31.10832 -30.42353 -29.91798 -27.59663 -26.97897 -24.81453 -23.51533 -22.54980 -22.05718 -20.20258 -18.84106 -17.52292 -16.80015 -16.47995 -16.29403 -15.62371 -14.86527 -14.60552 -14.51803 -14.30533 -14.06732 -13.72573 -13.39034 -13.23614 -12.58327 -12.46613 -12.22241 -12.17234 -11.78277 -11.69145 -11.48896 -11.11211 -10.99794 -10.92839 -10.65444 -10.51996 -10.01975 -9.95213 -9.29646 -9.21237 -8.85234 -8.77972 -8.46940 -7.96317 -7.30440 -6.10801 -4.12201 1.62644 1.63276 3.26134 3.35085 3.40351 3.66344 3.91515 4.29517 4.39985 4.73096 4.93398 4.96357 5.22998 5.24429 5.35592 5.37863 5.48213 5.54080 5.61983 5.70114 5.73786 5.84683 5.89302 5.91886 6.14154 6.32897 6.36329 6.46225 6.52227 6.64054 6.73057 6.78539 6.80392 6.95208 7.01979 7.32458 7.34941 7.46664 7.61845 7.74908 7.89790 7.98750 8.30225 8.96152 9.52280 10.99709 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021980 B = 0.005405 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.589220 B = 5179.056024 C = 5799.232433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.088 3.912 3 H 0.076 0.924 4 C 0.012 3.988 5 C -0.511 4.511 6 H 0.065 0.935 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.472 5.472 14 C 0.002 3.998 15 C 0.010 3.990 16 O -0.318 6.318 17 C 0.085 3.915 18 C -0.139 4.139 19 C -0.092 4.092 20 C -0.111 4.111 21 C 0.109 3.891 22 N -0.847 5.847 23 C -0.087 4.087 24 C 0.057 3.943 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.027 0.973 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.152 0.848 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.344 0.656 40 H 0.338 0.662 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 4.202 12.328 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.017 4.017 3 H 0.094 0.906 4 C -0.024 4.024 5 C -0.549 4.549 6 H 0.083 0.917 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.187 5.187 14 C -0.125 4.125 15 C -0.066 4.066 16 O -0.232 6.232 17 C 0.037 3.963 18 C -0.159 4.159 19 C -0.111 4.111 20 C -0.112 4.112 21 C -0.021 4.021 22 N -0.377 5.377 23 C -0.108 4.108 24 C -0.040 4.040 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.169 0.831 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.252 3.575 12.593 14.965 hybrid contribution 0.974 0.445 -1.082 1.522 sum -6.279 4.020 11.511 13.714 Atomic orbital electron populations 1.22849 0.98515 1.01761 1.01581 1.22058 0.90875 0.98987 0.89768 0.90573 1.19588 0.96722 0.95661 0.90476 1.21223 0.91385 1.34434 1.07833 0.91708 1.25024 0.98433 0.95399 0.95560 1.69960 1.35513 1.36063 1.11898 0.86549 0.85806 0.77803 0.77991 1.19596 1.21057 1.21135 1.59261 1.42724 1.12356 1.04398 1.23371 0.95949 0.85898 1.07291 1.24009 0.96263 1.03301 0.83002 1.86218 1.75228 1.27710 1.34029 1.19091 0.94624 0.86760 0.95819 1.20360 1.00436 0.97945 0.97118 1.20589 0.99244 0.92060 0.99199 1.19409 0.98691 0.96086 0.97016 1.20585 0.96779 0.93137 0.91614 1.58757 1.12141 1.36677 1.30110 1.20656 0.98826 0.96182 0.95113 1.18837 0.93329 0.94604 0.97259 0.92285 0.92624 0.92725 0.95501 0.95631 0.92963 0.83106 0.90865 0.87658 0.90210 0.85831 0.86009 0.94892 0.90587 0.84341 0.84960 0.85968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.34 8.08 37.16 0.30 -3.04 16 2 C 0.09 1.75 2.57 -67.71 -0.17 1.58 16 3 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 4 C 0.01 0.29 3.84 -27.89 -0.11 0.18 16 5 C -0.51 -13.23 7.21 -34.44 -0.25 -13.48 16 6 H 0.06 1.71 7.74 -52.48 -0.41 1.30 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -25.13 13.29 55.43 0.74 -24.39 16 9 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.47 -9.17 4.65 -163.28 -0.76 -9.93 16 14 C 0.00 0.04 5.33 -3.68 -0.02 0.02 16 15 C 0.01 0.18 6.29 37.38 0.24 0.41 16 16 O -0.32 -5.69 10.40 -20.21 -0.21 -5.90 16 17 C 0.09 1.48 5.95 -39.11 -0.23 1.24 16 18 C -0.14 -2.09 9.94 -39.40 -0.39 -2.48 16 19 C -0.09 -1.24 9.70 -39.60 -0.38 -1.62 16 20 C -0.11 -1.51 5.39 -104.68 -0.56 -2.07 16 21 C 0.11 1.18 6.91 -4.98 -0.03 1.15 16 22 N -0.85 -8.58 9.61 -11.41 -0.11 -8.69 16 23 C -0.09 -1.37 8.73 -39.31 -0.34 -1.71 16 24 C 0.06 1.01 3.22 -83.60 -0.27 0.74 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.99 5.03 -51.93 -0.26 0.73 16 27 H 0.05 0.93 5.83 -51.93 -0.30 0.63 16 28 H 0.03 0.64 5.02 -51.93 -0.26 0.38 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.15 3.32 4.22 -51.93 -0.22 3.11 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.08 1.44 3.99 -51.93 -0.21 1.23 16 35 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.03 0.34 8.08 -51.93 -0.42 -0.08 16 38 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.34 3.55 8.99 -39.29 -0.35 3.20 16 40 H 0.34 2.62 9.08 -39.29 -0.36 2.26 16 41 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 316.67 15.07 4.77 4.77 Total: -1.00 -28.29 316.67 -8.65 -36.94 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.72 Total: 9.03 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -2.33 Total: -17.64 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.13 Total: -43.01 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.21 Total: -5.90 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.29 -8.65 -36.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700968683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.795 kcal (2) G-P(sol) polarization free energy of solvation -28.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds