Wall clock time and date at job start Thu Apr 9 2020 14:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46838 * 2 1 4 4 C 1.52995 * 109.47516 * 239.99837 * 2 1 3 5 5 C 1.50699 * 109.47539 * 175.45794 * 4 2 1 6 6 H 1.08005 * 119.99471 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00292 * 180.02562 * 5 4 2 8 8 N 1.31503 * 119.99800 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99819 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47305 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47167 * 120.00490 * 9 7 5 12 12 H 1.48510 * 109.46976 * 240.00148 * 9 7 5 13 13 N 1.46901 * 109.47047 * 119.99485 * 2 1 3 14 14 C 1.46752 * 110.99519 * 91.97680 * 13 2 1 15 15 C 1.53432 * 108.60549 * 285.44442 * 14 13 2 16 16 O 1.43136 * 107.89429 * 296.76059 * 15 14 13 17 17 C 1.36147 * 116.67384 * 45.37600 * 16 15 14 18 18 C 1.38776 * 118.74591 * 165.22319 * 17 16 15 19 19 C 1.38177 * 120.20357 * 179.51246 * 18 17 16 20 20 C 1.38253 * 120.02715 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.93803 * 180.02562 * 20 19 18 22 22 N 1.46901 * 109.47123 * 90.00098 * 21 20 19 23 23 C 1.38058 * 120.11992 * 0.10111 * 20 19 18 24 24 C 1.38972 * 121.37674 * 344.93551 * 17 16 15 25 25 H 1.08998 * 109.47088 * 51.52318 * 1 2 3 26 26 H 1.09000 * 109.46523 * 171.52043 * 1 2 3 27 27 H 1.08997 * 109.47156 * 291.51398 * 1 2 3 28 28 H 1.08996 * 109.47307 * 295.46398 * 4 2 1 29 29 H 1.09001 * 109.46875 * 55.45947 * 4 2 1 30 30 H 0.97002 * 120.00142 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.62266 * 45.18847 * 14 13 2 32 32 H 1.09004 * 109.61366 * 165.71809 * 14 13 2 33 33 H 1.08997 * 109.77371 * 177.15400 * 15 14 13 34 34 H 1.09005 * 109.77170 * 56.35647 * 15 14 13 35 35 H 1.08002 * 119.89449 * 359.54365 * 18 17 16 36 36 H 1.08000 * 119.98359 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47049 * 210.00274 * 21 20 19 38 38 H 1.08997 * 109.47373 * 330.00200 * 21 20 19 39 39 H 1.00904 * 110.99321 * 56.04584 * 22 21 20 40 40 H 1.00898 * 110.99857 * 179.97438 * 22 21 20 41 41 H 1.08000 * 119.87866 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 3.5429 -0.6246 -1.3067 6 1 4.0804 -0.1013 -0.5297 7 6 4.2315 -1.2040 -2.3512 8 7 3.5769 -1.8406 -3.2975 9 14 6.0944 -1.0847 -2.4220 10 1 6.5866 -0.3215 -1.2471 11 1 6.6788 -2.4497 -2.4065 12 1 6.4986 -0.3873 -3.6693 13 7 2.0197 -0.6924 1.1995 14 6 2.2395 -2.1182 0.9307 15 6 0.8761 -2.8180 0.8553 16 8 0.2509 -2.7024 2.1377 17 6 0.2932 -1.4772 2.7300 18 6 -0.5473 -1.2265 3.8054 19 6 -0.5222 0.0031 4.4354 20 6 0.3416 0.9886 3.9949 21 6 0.3678 2.3286 4.6838 22 7 1.3500 2.2987 5.7758 23 6 1.1790 0.7478 2.9240 24 6 1.1597 -0.4869 2.2830 25 1 -0.3633 0.6394 -0.8045 26 1 -0.3632 -1.0165 -0.1515 27 1 -0.3633 0.3769 0.9560 28 1 1.7447 -1.7697 -1.2095 29 1 1.6119 -0.2565 -2.1373 30 1 4.0614 -2.2486 -4.0322 31 1 2.7639 -2.2353 -0.0177 32 1 2.8310 -2.5553 1.7352 33 1 1.0149 -3.8700 0.6060 34 1 0.2564 -2.3376 0.0982 35 1 -1.2228 -1.9949 4.1513 36 1 -1.1775 0.1942 5.2723 37 1 0.6455 3.1007 3.9663 38 1 -0.6198 2.5480 5.0894 39 1 2.2619 2.0339 5.4346 40 1 1.3867 3.1867 6.2535 41 1 1.8525 1.5203 2.5834 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700968683.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:55 Heat of formation + Delta-G solvation = -11.251471 kcal Electronic energy + Delta-G solvation = -22377.207233 eV Core-core repulsion = 19256.819653 eV Total energy + Delta-G solvation = -3120.387580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.45430 -39.07950 -38.33047 -35.40431 -34.89898 -32.72183 -31.76791 -31.06233 -29.37568 -28.31940 -25.91578 -25.30806 -23.91936 -23.31549 -21.61066 -20.30746 -18.83426 -18.45051 -18.06890 -17.67026 -16.63193 -16.61118 -15.95549 -15.81059 -15.45935 -15.28161 -15.15074 -14.68666 -14.52725 -14.04428 -13.98630 -13.80314 -13.50579 -13.28094 -13.17089 -13.01557 -12.75528 -12.44100 -12.25273 -12.18050 -12.03569 -11.80441 -11.48029 -11.18826 -11.00787 -10.55999 -10.12210 -9.61198 -9.19920 -8.66764 -8.17491 -6.23897 0.42648 0.44270 1.39124 1.42629 1.53839 2.35336 2.42656 2.70847 2.92683 3.17591 3.66124 3.89780 3.90382 3.97557 3.99660 4.10692 4.18769 4.29664 4.37326 4.41658 4.49062 4.56396 4.66067 4.74351 4.80784 4.88140 4.95025 5.07600 5.13252 5.16115 5.26765 5.32974 5.48741 5.61146 5.68279 5.80064 5.85136 6.11945 6.20824 6.23026 6.33210 6.62778 6.64151 6.89214 7.43385 8.93366 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021980 B = 0.005405 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.589220 B = 5179.056024 C = 5799.232433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.098 3.902 3 H 0.068 0.932 4 C 0.021 3.979 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.283 1.283 13 N -0.483 5.483 14 C 0.007 3.993 15 C 0.017 3.983 16 O -0.324 6.324 17 C 0.062 3.938 18 C -0.140 4.140 19 C -0.083 4.083 20 C -0.102 4.102 21 C 0.111 3.889 22 N -0.852 5.852 23 C -0.094 4.094 24 C 0.035 3.965 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.020 0.980 29 H -0.001 1.001 30 H 0.262 0.738 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.038 0.962 38 H 0.094 0.906 39 H 0.342 0.658 40 H 0.353 0.647 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.916 5.088 14.459 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.008 4.008 3 H 0.086 0.914 4 C -0.016 4.016 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.188 4.188 8 N -0.569 5.569 9 Si 0.777 3.223 10 H -0.193 1.193 11 H -0.206 1.206 12 H -0.209 1.209 13 N -0.199 5.199 14 C -0.120 4.120 15 C -0.059 4.059 16 O -0.238 6.238 17 C 0.014 3.986 18 C -0.159 4.159 19 C -0.102 4.102 20 C -0.103 4.103 21 C -0.019 4.019 22 N -0.383 5.383 23 C -0.115 4.115 24 C -0.062 4.062 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.017 0.983 30 H 0.071 0.929 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.090 0.910 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.056 0.944 38 H 0.112 0.888 39 H 0.154 0.846 40 H 0.167 0.833 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.946 4.481 14.751 17.344 hybrid contribution 1.139 0.226 -1.630 2.001 sum -6.807 4.706 13.121 15.513 Atomic orbital electron populations 1.22699 0.96651 1.01817 1.02308 1.21785 0.92279 0.97890 0.88798 0.91431 1.19427 0.95513 0.95384 0.91250 1.21406 0.92673 1.33631 1.07284 0.92531 1.25723 1.02456 0.95271 0.95378 1.70059 1.37052 1.37184 1.12576 0.85602 0.80996 0.77801 0.77875 1.19309 1.20634 1.20882 1.59223 1.43975 1.12117 1.04600 1.23147 0.96842 0.86577 1.05479 1.23901 0.94904 1.03989 0.83075 1.86200 1.75341 1.28373 1.33866 1.19382 0.95742 0.86499 0.96960 1.20669 0.99929 0.99067 0.96244 1.20976 0.98874 0.91099 0.99253 1.19736 0.97305 0.97411 0.95886 1.20611 0.97975 0.91450 0.91889 1.58739 1.11908 1.37859 1.29790 1.20755 0.99434 0.95429 0.95837 1.18931 0.94163 0.95829 0.97228 0.91559 0.92929 0.91801 0.96219 0.98263 0.92911 0.86105 0.90890 0.85964 0.91002 0.84126 0.82967 0.94376 0.88786 0.84589 0.83290 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.22 8.08 71.98 0.58 -5.64 16 2 C 0.10 3.97 2.57 44.91 0.12 4.09 16 3 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 4 C 0.02 1.03 3.84 29.85 0.11 1.15 16 5 C -0.51 -27.21 7.21 25.60 0.18 -27.03 16 6 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 7 C 0.01 0.53 5.46 84.66 0.46 1.00 16 8 N -0.93 -53.23 13.29 21.45 0.28 -52.95 16 9 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.48 -19.01 4.65 -670.50 -3.12 -22.13 16 14 C 0.01 0.28 5.33 86.48 0.46 0.74 16 15 C 0.02 0.61 6.29 72.13 0.45 1.07 16 16 O -0.32 -11.36 10.40 -95.22 -0.99 -12.35 16 17 C 0.06 2.07 5.95 22.57 0.13 2.20 16 18 C -0.14 -3.84 9.94 22.38 0.22 -3.62 16 19 C -0.08 -1.95 9.70 22.26 0.22 -1.73 16 20 C -0.10 -2.49 5.39 -19.90 -0.11 -2.60 16 21 C 0.11 2.03 6.91 85.56 0.59 2.62 16 22 N -0.85 -14.69 9.61 -190.01 -1.83 -16.52 16 23 C -0.09 -2.83 8.73 22.44 0.20 -2.63 16 24 C 0.04 1.23 3.22 38.26 0.12 1.35 16 25 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.05 1.88 5.03 -2.39 -0.01 1.87 16 27 H 0.06 2.13 5.83 -2.39 -0.01 2.11 16 28 H 0.02 0.98 5.02 -2.39 -0.01 0.97 16 29 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.12 5.54 4.22 -2.39 -0.01 5.53 16 32 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.12 3.78 8.14 -2.39 -0.02 3.76 16 34 H 0.07 2.64 3.99 -2.38 -0.01 2.63 16 35 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 36 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.04 0.67 8.08 -2.39 -0.02 0.65 16 38 H 0.09 1.42 8.08 -2.39 -0.02 1.40 16 39 H 0.34 6.27 8.99 -89.69 -0.81 5.46 16 40 H 0.35 4.38 9.08 -89.70 -0.81 3.56 16 41 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -60.61 316.67 -0.43 -61.04 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.56 Total: 26.62 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 3.75 Total: -29.05 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -4.66 Total: -91.60 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.99 Total: -12.35 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -60.61 -0.43 -61.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700968683.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.789 kcal (2) G-P(sol) polarization free energy of solvation -60.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds