Wall clock time and date at job start Thu Apr 9 2020 14:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47035 * 2 1 4 4 C 1.35530 * 125.68010 * 266.22964 * 3 2 1 5 5 C 1.35445 * 108.87379 * 180.02562 * 4 3 2 6 6 C 1.39832 * 107.86666 * 359.73750 * 5 4 3 7 7 C 1.37648 * 125.67719 * 86.25386 * 3 2 1 8 8 C 1.46682 * 126.23417 * 359.97438 * 7 3 2 9 9 O 1.21692 * 119.99990 * 332.48551 * 8 7 3 10 10 N 1.34777 * 119.99893 * 152.49287 * 8 7 3 11 11 C 1.46932 * 120.62743 * 171.29733 * 10 8 7 12 12 C 1.53195 * 108.77620 * 126.36726 * 11 10 8 13 13 C 1.53043 * 109.31325 * 54.63215 * 12 11 10 14 14 C 1.50696 * 109.44974 * 178.62216 * 13 12 11 15 15 H 1.08005 * 120.00141 * 120.05958 * 14 13 12 16 16 C 1.37874 * 119.99771 * 300.06262 * 14 13 12 17 17 N 1.31516 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99843 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47371 * 60.00002 * 18 16 14 20 20 H 1.48504 * 109.47204 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47195 * 299.99805 * 18 16 14 22 22 C 1.53041 * 109.53947 * 298.63728 * 13 12 11 23 23 C 1.46927 * 120.63474 * 351.26929 * 10 8 7 24 24 H 1.09003 * 109.47022 * 295.04114 * 1 2 3 25 25 H 1.08999 * 109.47206 * 55.04538 * 1 2 3 26 26 H 1.08996 * 109.46881 * 175.04465 * 1 2 3 27 27 H 1.09000 * 109.47580 * 239.99862 * 2 1 3 28 28 H 1.09007 * 109.47330 * 119.99849 * 2 1 3 29 29 H 1.07999 * 125.55871 * 0.04185 * 4 3 2 30 30 H 1.08007 * 126.06949 * 180.02562 * 5 4 3 31 31 H 1.08002 * 126.45991 * 180.26193 * 6 5 4 32 32 H 1.09004 * 109.58446 * 246.15253 * 11 10 8 33 33 H 1.08993 * 109.58811 * 6.57711 * 11 10 8 34 34 H 1.08994 * 109.49826 * 174.58380 * 12 11 10 35 35 H 1.09000 * 109.49514 * 294.67957 * 12 11 10 36 36 H 1.09000 * 109.46099 * 58.65576 * 13 12 11 37 37 H 0.96997 * 120.00123 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.49679 * 301.41571 * 22 13 12 39 39 H 1.08997 * 109.52483 * 181.33511 * 22 13 12 40 40 H 1.09004 * 109.58204 * 353.41931 * 23 10 8 41 41 H 1.09001 * 109.58370 * 113.70178 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3500 2.1024 -1.0985 5 6 2.7585 3.3332 -0.7077 6 6 2.6750 3.3902 0.6870 7 6 2.2170 2.1625 1.1157 8 6 1.9788 1.7636 2.5071 9 8 1.1435 0.9164 2.7627 10 7 2.6850 2.3356 3.5024 11 6 2.3315 2.0910 4.9074 12 6 3.5768 1.5967 5.6503 13 6 4.7150 2.6008 5.4541 14 6 5.9315 2.1345 6.2115 15 1 6.8525 1.9349 5.6839 16 6 5.8687 1.9628 7.5781 17 7 4.7474 2.2064 8.2207 18 14 7.3769 1.3856 8.5171 19 1 8.4808 2.3607 8.3284 20 1 7.0502 1.2804 9.9619 21 1 7.7984 0.0559 8.0074 22 6 5.0517 2.7083 3.9651 23 6 3.8232 3.2152 3.2031 24 1 -0.3633 0.4350 0.9311 25 1 -0.3633 0.5888 -0.8423 26 1 -0.3633 -1.0238 -0.0888 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.2970 1.7527 -2.1189 30 1 3.0857 4.1310 -1.3582 31 1 2.9249 4.2356 1.3109 32 1 1.9783 3.0167 5.3618 33 1 1.5495 1.3337 4.9609 34 1 3.3533 1.5032 6.7129 35 1 3.8754 0.6262 5.2540 36 1 4.4065 3.5771 5.8280 37 1 4.7034 2.0859 9.1822 38 1 5.3365 1.7273 3.5847 39 1 5.8782 3.4056 3.8279 40 1 4.0253 3.1995 2.1321 41 1 3.5906 4.2330 3.5163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701200960.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:59 Heat of formation + Delta-G solvation = 11.674599 kcal Electronic energy + Delta-G solvation = -21966.187092 eV Core-core repulsion = 18846.793661 eV Total energy + Delta-G solvation = -3119.393431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.39893 -39.07290 -36.71875 -34.33143 -33.38770 -31.15663 -30.63058 -29.30605 -28.69559 -26.19957 -23.75475 -23.30998 -22.46156 -21.29363 -20.54650 -19.32538 -18.44918 -17.01065 -16.49002 -15.78162 -15.27426 -15.22012 -14.54480 -14.32889 -14.24111 -13.68021 -13.40018 -13.15717 -12.84352 -12.69064 -12.47612 -12.28611 -12.17419 -12.11349 -11.97217 -11.45198 -11.21908 -11.12273 -10.90618 -10.64093 -10.39942 -10.06314 -9.61745 -9.55321 -9.16243 -8.90604 -8.62490 -8.35358 -8.18256 -7.87510 -6.00355 -4.07020 1.70922 2.70358 2.83644 3.31086 3.36107 3.38556 3.51894 3.66592 4.42539 4.64323 4.80951 4.99538 5.01312 5.18054 5.29200 5.39881 5.44786 5.58054 5.61456 5.74422 5.84677 5.97536 6.08025 6.12353 6.15221 6.22102 6.29686 6.44551 6.47578 6.66789 6.79674 6.93988 7.00289 7.07689 7.21818 7.28228 7.36815 7.70926 7.90674 7.95989 8.08072 8.42115 8.55389 8.96122 9.57950 11.05005 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030272 B = 0.004347 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.727572 B = 6439.918261 C = 6795.964777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.102 3.898 3 N -0.410 5.410 4 C 0.003 3.997 5 C -0.209 4.209 6 C -0.151 4.151 7 C -0.035 4.035 8 C 0.579 3.421 9 O -0.559 6.559 10 N -0.586 5.586 11 C 0.111 3.889 12 C -0.122 4.122 13 C 0.048 3.952 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.062 3.938 17 N -0.891 5.891 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.123 4.123 23 C 0.090 3.910 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.164 0.836 30 H 0.140 0.860 31 H 0.149 0.851 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.037 0.963 36 H 0.028 0.972 37 H 0.261 0.739 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 0.165 -16.721 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.019 4.019 3 N -0.084 5.084 4 C -0.131 4.131 5 C -0.233 4.233 6 C -0.177 4.177 7 C -0.149 4.149 8 C 0.368 3.632 9 O -0.440 6.440 10 N -0.317 5.317 11 C -0.010 4.010 12 C -0.160 4.160 13 C 0.030 3.970 14 C -0.552 4.552 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.204 1.204 22 C -0.161 4.161 23 C -0.032 4.032 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.181 0.819 30 H 0.157 0.843 31 H 0.166 0.834 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.368 -0.660 -16.338 17.547 hybrid contribution 0.910 -0.270 0.518 1.081 sum -5.458 -0.931 -15.820 16.761 Atomic orbital electron populations 1.22116 0.93903 1.02613 1.03681 1.21894 0.96194 0.79708 1.04116 1.44062 1.47469 1.11664 1.05201 1.21899 1.06587 0.93192 0.91425 1.20796 1.09932 0.97435 0.95114 1.21531 1.04326 0.96521 0.95297 1.20262 1.13403 0.93388 0.87845 1.17064 0.81420 0.81267 0.83457 1.90737 1.36131 1.32730 1.84442 1.47931 1.30092 1.47168 1.06478 1.21929 0.99885 1.00729 0.78459 1.22008 0.93431 0.98612 1.01978 1.18644 0.94001 0.95431 0.88952 1.21160 0.96809 1.45088 0.92107 0.92792 1.24958 0.95894 0.95346 0.97719 1.69831 1.25347 1.49223 1.08579 0.86683 0.83382 0.79281 0.78788 1.20304 1.21311 1.20383 1.22007 0.95031 1.00160 0.98948 1.22388 0.86558 0.93020 1.01246 0.90345 0.92592 0.91088 0.89588 0.88710 0.81906 0.84264 0.83366 0.92095 0.90563 0.87807 0.94388 0.95433 0.92912 0.93050 0.92017 0.89124 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.18 37.16 0.38 -1.43 16 2 C 0.10 1.18 6.09 -4.04 -0.02 1.15 16 3 N -0.41 -5.52 2.76 -112.87 -0.31 -5.83 16 4 C 0.00 0.04 11.37 -16.91 -0.19 -0.15 16 5 C -0.21 -2.45 10.81 -39.98 -0.43 -2.88 16 6 C -0.15 -2.09 8.44 -39.12 -0.33 -2.42 16 7 C -0.04 -0.56 6.33 -81.98 -0.52 -1.07 16 8 C 0.58 10.77 7.41 -12.85 -0.10 10.67 16 9 O -0.56 -11.46 13.85 5.20 0.07 -11.39 16 10 N -0.59 -10.96 2.97 -174.30 -0.52 -11.48 16 11 C 0.11 2.25 6.44 -3.71 -0.02 2.23 16 12 C -0.12 -2.85 5.15 -26.61 -0.14 -2.98 16 13 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 14 C -0.51 -13.77 8.56 -34.44 -0.29 -14.07 16 15 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 16 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -24.85 11.31 55.43 0.63 -24.23 16 18 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 23 C 0.09 1.53 5.09 -3.71 -0.02 1.51 16 24 H 0.08 1.10 6.92 -51.93 -0.36 0.74 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.09 1.28 7.34 -51.93 -0.38 0.90 16 29 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 31 H 0.15 1.88 6.40 -52.49 -0.34 1.55 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.56 7.00 -51.93 -0.36 1.20 16 34 H 0.10 2.69 6.03 -51.93 -0.31 2.38 16 35 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 40 H 0.09 1.37 4.35 -51.93 -0.23 1.15 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 323.75 15.07 4.88 4.88 Total: -1.00 -30.08 323.75 -8.56 -38.64 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -6.17 Total: 2.89 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.11 Total: -9.50 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: -0.20 Total: -41.54 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.39 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.08 -8.56 -38.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701200960.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.313 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds