Wall clock time and date at job start Thu Apr 9 2020 14:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47035 * 2 1 4 4 C 1.35530 * 125.68010 * 266.22964 * 3 2 1 5 5 C 1.35445 * 108.87379 * 180.02562 * 4 3 2 6 6 C 1.39832 * 107.86666 * 359.73750 * 5 4 3 7 7 C 1.37648 * 125.67719 * 86.25386 * 3 2 1 8 8 C 1.46682 * 126.23417 * 359.97438 * 7 3 2 9 9 O 1.21692 * 119.99990 * 332.48551 * 8 7 3 10 10 N 1.34777 * 119.99893 * 152.49287 * 8 7 3 11 11 C 1.46932 * 120.62743 * 171.29733 * 10 8 7 12 12 C 1.53195 * 108.77620 * 126.36726 * 11 10 8 13 13 C 1.53043 * 109.31325 * 54.63215 * 12 11 10 14 14 C 1.50696 * 109.44974 * 178.62216 * 13 12 11 15 15 H 1.08005 * 120.00141 * 120.05958 * 14 13 12 16 16 C 1.37874 * 119.99771 * 300.06262 * 14 13 12 17 17 N 1.31516 * 120.00481 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99843 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47371 * 60.00002 * 18 16 14 20 20 H 1.48504 * 109.47204 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47195 * 299.99805 * 18 16 14 22 22 C 1.53041 * 109.53947 * 298.63728 * 13 12 11 23 23 C 1.46927 * 120.63474 * 351.26929 * 10 8 7 24 24 H 1.09003 * 109.47022 * 295.04114 * 1 2 3 25 25 H 1.08999 * 109.47206 * 55.04538 * 1 2 3 26 26 H 1.08996 * 109.46881 * 175.04465 * 1 2 3 27 27 H 1.09000 * 109.47580 * 239.99862 * 2 1 3 28 28 H 1.09007 * 109.47330 * 119.99849 * 2 1 3 29 29 H 1.07999 * 125.55871 * 0.04185 * 4 3 2 30 30 H 1.08007 * 126.06949 * 180.02562 * 5 4 3 31 31 H 1.08002 * 126.45991 * 180.26193 * 6 5 4 32 32 H 1.09004 * 109.58446 * 246.15253 * 11 10 8 33 33 H 1.08993 * 109.58811 * 6.57711 * 11 10 8 34 34 H 1.08994 * 109.49826 * 174.58380 * 12 11 10 35 35 H 1.09000 * 109.49514 * 294.67957 * 12 11 10 36 36 H 1.09000 * 109.46099 * 58.65576 * 13 12 11 37 37 H 0.96997 * 120.00123 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.49679 * 301.41571 * 22 13 12 39 39 H 1.08997 * 109.52483 * 181.33511 * 22 13 12 40 40 H 1.09004 * 109.58204 * 353.41931 * 23 10 8 41 41 H 1.09001 * 109.58370 * 113.70178 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3500 2.1024 -1.0985 5 6 2.7585 3.3332 -0.7077 6 6 2.6750 3.3902 0.6870 7 6 2.2170 2.1625 1.1157 8 6 1.9788 1.7636 2.5071 9 8 1.1435 0.9164 2.7627 10 7 2.6850 2.3356 3.5024 11 6 2.3315 2.0910 4.9074 12 6 3.5768 1.5967 5.6503 13 6 4.7150 2.6008 5.4541 14 6 5.9315 2.1345 6.2115 15 1 6.8525 1.9349 5.6839 16 6 5.8687 1.9628 7.5781 17 7 4.7474 2.2064 8.2207 18 14 7.3769 1.3856 8.5171 19 1 8.4808 2.3607 8.3284 20 1 7.0502 1.2804 9.9619 21 1 7.7984 0.0559 8.0074 22 6 5.0517 2.7083 3.9651 23 6 3.8232 3.2152 3.2031 24 1 -0.3633 0.4350 0.9311 25 1 -0.3633 0.5888 -0.8423 26 1 -0.3633 -1.0238 -0.0888 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.2970 1.7527 -2.1189 30 1 3.0857 4.1310 -1.3582 31 1 2.9249 4.2356 1.3109 32 1 1.9783 3.0167 5.3618 33 1 1.5495 1.3337 4.9609 34 1 3.3533 1.5032 6.7129 35 1 3.8754 0.6262 5.2540 36 1 4.4065 3.5771 5.8280 37 1 4.7034 2.0859 9.1822 38 1 5.3365 1.7273 3.5847 39 1 5.8782 3.4056 3.8279 40 1 4.0253 3.1995 2.1321 41 1 3.5906 4.2330 3.5163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701200960.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:50:58 Heat of formation + Delta-G solvation = -4.625918 kcal Electronic energy + Delta-G solvation = -21966.893936 eV Core-core repulsion = 18846.793661 eV Total energy + Delta-G solvation = -3120.100274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.44725 -40.50159 -38.32677 -35.63336 -34.86769 -32.97682 -32.18624 -30.22934 -29.94408 -28.00092 -25.23588 -24.42231 -24.04692 -22.75467 -21.58712 -20.86997 -19.70931 -18.47245 -18.21693 -17.29621 -16.55074 -16.47580 -16.39060 -15.51237 -15.30675 -14.96501 -14.80691 -14.59451 -14.51289 -14.26941 -13.91211 -13.60465 -13.35846 -13.09236 -13.01343 -12.85990 -12.84444 -12.77820 -12.40803 -12.17287 -12.11896 -11.96205 -11.44829 -11.16930 -10.89288 -10.77847 -10.41033 -9.63687 -9.58652 -9.05157 -8.07599 -6.21828 0.57512 1.42248 1.43057 1.50481 1.63135 1.89435 2.28694 2.35465 2.44118 3.18730 3.57371 3.80120 4.11342 4.12662 4.21637 4.31159 4.33032 4.35162 4.49124 4.50239 4.52315 4.60690 4.70568 4.78798 4.86869 4.89033 4.97113 5.15323 5.21191 5.22292 5.23897 5.33003 5.44031 5.50768 5.65363 5.92526 5.97094 6.05860 6.09872 6.37942 6.40710 6.49685 6.88827 7.12959 7.46251 8.95673 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030272 B = 0.004347 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.727572 B = 6439.918261 C = 6795.964777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -0.417 5.417 4 C 0.023 3.977 5 C -0.216 4.216 6 C -0.146 4.146 7 C -0.080 4.080 8 C 0.575 3.425 9 O -0.589 6.589 10 N -0.592 5.592 11 C 0.123 3.877 12 C -0.110 4.110 13 C 0.045 3.955 14 C -0.535 4.535 15 H 0.052 0.948 16 C 0.014 3.986 17 N -0.915 5.915 18 Si 0.951 3.049 19 H -0.269 1.269 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.115 4.115 23 C 0.099 3.901 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.126 0.874 28 H 0.065 0.935 29 H 0.206 0.794 30 H 0.168 0.832 31 H 0.156 0.844 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.018 0.982 36 H 0.007 0.993 37 H 0.261 0.739 38 H 0.039 0.961 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.050 0.700 -19.742 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.022 4.022 3 N -0.090 5.090 4 C -0.111 4.111 5 C -0.239 4.239 6 C -0.173 4.173 7 C -0.193 4.193 8 C 0.366 3.634 9 O -0.472 6.472 10 N -0.323 5.323 11 C 0.001 3.999 12 C -0.148 4.148 13 C 0.027 3.973 14 C -0.573 4.573 15 H 0.070 0.930 16 C -0.184 4.184 17 N -0.555 5.555 18 Si 0.777 3.223 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.202 1.202 22 C -0.153 4.153 23 C -0.022 4.022 24 H 0.058 0.942 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.144 0.856 28 H 0.084 0.916 29 H 0.223 0.777 30 H 0.186 0.814 31 H 0.174 0.826 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.037 0.963 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.093 0.907 40 H 0.134 0.866 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.679 -0.115 -19.370 20.185 hybrid contribution 0.678 -0.446 1.375 1.597 sum -5.001 -0.561 -17.995 18.685 Atomic orbital electron populations 1.22039 0.93633 1.03745 1.02109 1.22025 0.96418 0.79202 1.04582 1.44290 1.47431 1.12189 1.05135 1.22676 1.03511 0.92579 0.92382 1.21183 1.09863 0.98581 0.94309 1.21783 1.02976 0.95766 0.96754 1.19963 1.17302 0.95109 0.86960 1.17537 0.80673 0.80432 0.84719 1.90710 1.37314 1.34096 1.85128 1.47925 1.30883 1.47818 1.05698 1.21596 0.97988 1.00596 0.79738 1.21760 0.94853 0.97711 1.00509 1.18615 0.93188 0.94032 0.91469 1.21552 0.97702 1.45209 0.92801 0.93009 1.25702 0.98505 0.95534 0.98689 1.69966 1.26959 1.49907 1.08656 0.85725 0.80296 0.78861 0.77439 1.19415 1.21049 1.20162 1.21877 0.97018 1.00115 0.96335 1.22439 0.84511 0.93077 1.02204 0.94221 0.91133 0.89175 0.85626 0.91647 0.77735 0.81443 0.82641 0.91515 0.91277 0.90690 0.96327 0.97533 0.93015 0.94220 0.90692 0.86611 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 10.18 71.98 0.73 -2.51 16 2 C 0.10 2.10 6.09 86.38 0.53 2.63 16 3 N -0.42 -10.23 2.76 -511.02 -1.41 -11.64 16 4 C 0.02 0.42 11.37 83.48 0.95 1.37 16 5 C -0.22 -4.17 10.81 22.01 0.24 -3.94 16 6 C -0.15 -3.66 8.44 22.57 0.19 -3.47 16 7 C -0.08 -2.45 6.33 40.35 0.26 -2.19 16 8 C 0.58 21.67 7.41 86.45 0.64 22.31 16 9 O -0.59 -25.11 13.85 -4.32 -0.06 -25.17 16 10 N -0.59 -22.42 2.97 -823.58 -2.45 -24.87 16 11 C 0.12 5.18 6.44 86.36 0.56 5.74 16 12 C -0.11 -5.36 5.15 30.67 0.16 -5.21 16 13 C 0.05 2.24 2.06 -11.51 -0.02 2.22 16 14 C -0.53 -29.23 8.56 25.60 0.22 -29.01 16 15 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 16 C 0.01 0.79 5.30 84.65 0.45 1.24 16 17 N -0.92 -52.46 11.31 21.45 0.24 -52.22 16 18 Si 0.95 43.56 29.54 68.60 2.03 45.58 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 C -0.12 -4.59 5.30 30.67 0.16 -4.42 16 23 C 0.10 3.27 5.09 86.36 0.44 3.71 16 24 H 0.04 1.13 6.92 -2.39 -0.02 1.11 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.13 1.65 8.13 -2.39 -0.02 1.63 16 28 H 0.06 1.79 7.34 -2.38 -0.02 1.77 16 29 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 31 H 0.16 3.53 6.40 -2.91 -0.02 3.51 16 32 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 33 H 0.07 2.98 7.00 -2.39 -0.02 2.97 16 34 H 0.07 4.10 6.03 -2.39 -0.01 4.09 16 35 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.12 3.28 4.35 -2.39 -0.01 3.27 16 41 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -67.81 323.75 4.85 -62.95 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 1.01 Total: 16.91 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 5.49 Total: -11.54 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -3.62 Total: -88.73 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.06 Total: -25.17 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -67.81 4.85 -62.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701200960.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.326 kcal (2) G-P(sol) polarization free energy of solvation -67.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds