Wall clock time and date at job start Thu Apr 9 2020 14:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46911 * 2 1 4 4 C 1.35538 * 125.68150 * 261.46961 * 3 2 1 5 5 C 1.35447 * 108.87463 * 180.26542 * 4 3 2 6 6 C 1.39841 * 107.86409 * 359.76218 * 5 4 3 7 7 C 1.37655 * 125.67827 * 81.33156 * 3 2 1 8 8 C 1.46681 * 126.23044 * 0.02562 * 7 3 2 9 9 O 1.21692 * 120.00353 * 25.57945 * 8 7 3 10 10 N 1.34779 * 119.99447 * 205.58051 * 8 7 3 11 11 C 1.46926 * 120.63219 * 0.95447 * 10 8 7 12 12 C 1.53191 * 108.88951 * 126.46847 * 11 10 8 13 13 C 1.53040 * 109.31725 * 54.56095 * 12 11 10 14 14 C 1.53037 * 109.53778 * 298.63618 * 13 12 11 15 15 H 1.08997 * 109.50011 * 301.37419 * 14 13 12 16 16 C 1.50706 * 109.49526 * 181.31226 * 14 13 12 17 17 H 1.07996 * 119.99763 * 359.97438 * 16 14 13 18 18 C 1.37877 * 119.99782 * 179.97438 * 16 14 13 19 19 N 1.31512 * 120.00031 * 180.02562 * 18 16 14 20 20 Si 1.86806 * 120.00044 * 0.02562 * 18 16 14 21 21 H 1.48503 * 109.46966 * 90.00106 * 20 18 16 22 22 H 1.48498 * 109.46966 * 210.00081 * 20 18 16 23 23 H 1.48500 * 109.47173 * 330.00198 * 20 18 16 24 24 C 1.46967 * 120.64936 * 180.77762 * 10 8 7 25 25 H 1.09001 * 109.46983 * 295.02235 * 1 2 3 26 26 H 1.08995 * 109.47527 * 55.02381 * 1 2 3 27 27 H 1.09006 * 109.46840 * 175.02704 * 1 2 3 28 28 H 1.08995 * 109.46935 * 239.99946 * 2 1 3 29 29 H 1.08998 * 109.47131 * 120.00088 * 2 1 3 30 30 H 1.08001 * 125.55831 * 359.97438 * 4 3 2 31 31 H 1.08001 * 126.07021 * 179.79053 * 5 4 3 32 32 H 1.08004 * 126.45894 * 180.02562 * 6 5 4 33 33 H 1.08994 * 109.58818 * 6.61229 * 11 10 8 34 34 H 1.08998 * 109.58591 * 246.32577 * 11 10 8 35 35 H 1.08998 * 109.49665 * 174.51810 * 12 11 10 36 36 H 1.09002 * 109.49582 * 294.60983 * 12 11 10 37 37 H 1.09004 * 109.45524 * 58.65530 * 13 12 11 38 38 H 1.08998 * 109.46368 * 178.61179 * 13 12 11 39 39 H 0.96997 * 120.00156 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.46243 * 113.75079 * 24 10 8 41 41 H 1.08993 * 109.70998 * 353.46114 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4358 2.0722 -1.0888 5 6 2.8187 3.3120 -0.7006 6 6 2.6302 3.4060 0.6819 7 6 2.1270 2.1943 1.1054 8 6 1.7776 1.8348 2.4839 9 8 1.7978 0.6690 2.8324 10 7 1.4340 2.7956 3.3644 11 6 1.3848 4.2052 2.9529 12 6 0.0106 4.7790 3.3121 13 6 -0.2607 4.5490 4.8006 14 6 -0.2733 3.0468 5.0924 15 1 -1.0392 2.5646 4.4851 16 6 -0.5724 2.8204 6.5521 17 1 -0.7367 3.6636 7.2066 18 6 -0.6362 1.5370 7.0517 19 7 -0.8978 1.3394 8.3253 20 14 -0.3513 0.0786 5.9195 21 1 1.0937 -0.2638 5.9076 22 1 -1.1321 -1.0865 6.4072 23 1 -0.7888 0.4270 4.5439 24 6 1.0978 2.4533 4.7535 25 1 -0.3633 0.4347 0.9312 26 1 -0.3634 0.5890 -0.8420 27 1 -0.3633 -1.0239 -0.0891 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.4634 1.6940 -2.1000 31 1 3.2012 4.0901 -1.3445 32 1 2.8391 4.2659 1.3011 33 1 1.5409 4.2773 1.8766 34 1 2.1619 4.7651 3.4732 35 1 -0.0038 5.8482 3.1006 36 1 -0.7576 4.2804 2.7210 37 1 0.5216 5.0270 5.3903 38 1 -1.2273 4.9782 5.0642 39 1 -0.9423 0.4365 8.6769 40 1 1.8513 2.8688 5.4225 41 1 1.0653 1.3698 4.8676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701201123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:01 Heat of formation + Delta-G solvation = 28.063626 kcal Electronic energy + Delta-G solvation = -22504.577855 eV Core-core repulsion = 19385.895106 eV Total energy + Delta-G solvation = -3118.682749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48467 -39.19782 -36.88205 -34.40825 -33.32061 -31.92892 -30.79968 -29.35422 -29.07435 -25.37018 -24.94230 -23.57673 -22.13065 -21.45750 -20.70146 -19.36376 -18.66646 -17.07423 -16.63263 -16.21751 -15.34582 -15.18718 -14.67777 -14.26529 -14.12231 -14.08805 -13.65611 -13.44428 -13.03959 -12.88216 -12.57841 -12.49106 -12.27140 -12.17844 -12.10335 -11.96337 -11.28673 -11.07688 -11.00319 -10.55265 -10.33475 -10.04365 -9.77701 -9.61878 -9.21260 -9.09730 -8.67953 -8.60596 -8.24970 -7.95659 -6.10807 -4.12090 1.66073 2.64774 2.78303 3.36781 3.43159 3.51703 3.55376 3.62734 4.41708 4.62436 4.74304 4.93312 4.97008 5.19612 5.21775 5.27457 5.32007 5.37692 5.42976 5.55772 5.64448 5.73595 5.86185 6.01424 6.04193 6.05167 6.12502 6.17192 6.23537 6.43684 6.53374 6.64729 6.75075 6.80140 6.92683 7.02109 7.15913 7.24157 7.44207 7.71793 7.86741 8.45589 8.56420 8.92713 9.50923 11.01231 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.006669 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.463399 B = 4197.678073 C = 5089.519994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 N -0.408 5.408 4 C 0.004 3.996 5 C -0.208 4.208 6 C -0.162 4.162 7 C -0.032 4.032 8 C 0.576 3.424 9 O -0.555 6.555 10 N -0.590 5.590 11 C 0.075 3.925 12 C -0.135 4.135 13 C -0.101 4.101 14 C 0.005 3.995 15 H 0.030 0.970 16 C -0.515 4.515 17 H 0.078 0.922 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.880 3.120 21 H -0.273 1.273 22 H -0.296 1.296 23 H -0.264 1.264 24 C 0.104 3.896 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.164 0.836 31 H 0.140 0.860 32 H 0.157 0.843 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.265 0.735 40 H 0.068 0.932 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.811 3.485 -19.647 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.029 4.029 3 N -0.082 5.082 4 C -0.130 4.130 5 C -0.232 4.232 6 C -0.187 4.187 7 C -0.146 4.146 8 C 0.364 3.636 9 O -0.435 6.435 10 N -0.321 5.321 11 C -0.047 4.047 12 C -0.174 4.174 13 C -0.139 4.139 14 C -0.014 4.014 15 H 0.048 0.952 16 C -0.553 4.553 17 H 0.096 0.904 18 C -0.130 4.130 19 N -0.533 5.533 20 Si 0.710 3.290 21 H -0.199 1.199 22 H -0.224 1.224 23 H -0.189 1.189 24 C -0.016 4.016 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.181 0.819 31 H 0.158 0.842 32 H 0.174 0.826 33 H 0.128 0.872 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.650 2.356 -19.260 20.209 hybrid contribution 0.175 -0.864 -0.495 1.011 sum 5.824 1.492 -19.755 20.650 Atomic orbital electron populations 1.22106 0.94116 1.03010 1.03154 1.22066 0.95925 0.79841 1.05050 1.44081 1.46640 1.11443 1.06015 1.21934 1.05743 0.93622 0.91743 1.20799 1.09767 0.97271 0.95385 1.21655 1.05212 0.96260 0.95599 1.20254 1.13338 0.92509 0.88527 1.17124 0.77613 0.85339 0.83477 1.90766 1.54869 1.18498 1.79370 1.48119 1.65478 1.06743 1.11785 1.22637 0.98241 0.81278 1.02555 1.21975 0.96551 0.99855 0.98973 1.21453 1.01232 0.98217 0.92999 1.19483 0.91641 0.92465 0.97845 0.95237 1.20964 1.48618 0.93882 0.91857 0.90400 1.25041 0.94194 0.98877 0.94857 1.69888 1.48701 1.21882 1.12870 0.86981 0.78519 0.82174 0.81365 1.19945 1.22352 1.18913 1.22647 0.99609 1.01601 0.77741 0.91581 0.92170 0.90635 0.89293 0.87478 0.81853 0.84210 0.82587 0.87245 0.91468 0.91571 0.92179 0.92480 0.92277 0.92522 0.91367 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.23 37.16 0.38 -1.63 16 2 C 0.09 1.14 6.37 -4.04 -0.03 1.11 16 3 N -0.41 -5.63 2.76 -112.87 -0.31 -5.94 16 4 C 0.00 0.04 11.36 -16.91 -0.19 -0.15 16 5 C -0.21 -2.33 10.81 -39.98 -0.43 -2.77 16 6 C -0.16 -2.14 8.55 -39.12 -0.33 -2.47 16 7 C -0.03 -0.51 6.52 -81.98 -0.53 -1.05 16 8 C 0.58 11.43 7.55 -12.85 -0.10 11.34 16 9 O -0.55 -12.78 14.56 5.20 0.08 -12.71 16 10 N -0.59 -11.46 2.98 -174.28 -0.52 -11.98 16 11 C 0.08 1.12 5.35 -3.71 -0.02 1.10 16 12 C -0.14 -2.07 6.08 -26.61 -0.16 -2.24 16 13 C -0.10 -1.93 5.11 -26.69 -0.14 -2.07 16 14 C 0.01 0.12 1.84 -91.65 -0.17 -0.05 16 15 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 16 C -0.52 -14.38 9.14 -34.44 -0.31 -14.69 16 17 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 18 C 0.07 2.13 5.45 -17.82 -0.10 2.04 16 19 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 20 Si 0.88 23.41 24.33 -169.99 -4.14 19.27 16 21 H -0.27 -7.36 6.92 56.52 0.39 -6.96 16 22 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 23 H -0.26 -7.02 6.53 56.52 0.37 -6.65 16 24 C 0.10 2.39 5.11 -3.69 -0.02 2.37 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 29 H 0.11 1.59 6.60 -51.93 -0.34 1.25 16 30 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.16 1.78 5.77 -52.48 -0.30 1.48 16 33 H 0.11 1.42 3.40 -51.93 -0.18 1.25 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.08 2.02 2.34 -51.93 -0.12 1.89 16 LS Contribution 317.72 15.07 4.79 4.79 Total: -1.00 -33.61 317.72 -7.47 -41.08 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.99 Total: 1.45 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -2.15 Total: -9.16 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.06 Total: -44.72 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: 0.08 Total: -12.71 kcal Atomic # 14 Polarization: 23.41 SS G_CDS: -4.14 Total: 19.27 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.61 -7.47 -41.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701201123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.140 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds