Wall clock time and date at job start Thu Apr 9 2020 14:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46911 * 2 1 4 4 C 1.35538 * 125.68150 * 261.46961 * 3 2 1 5 5 C 1.35447 * 108.87463 * 180.26542 * 4 3 2 6 6 C 1.39841 * 107.86409 * 359.76218 * 5 4 3 7 7 C 1.37655 * 125.67827 * 81.33156 * 3 2 1 8 8 C 1.46681 * 126.23044 * 0.02562 * 7 3 2 9 9 O 1.21692 * 120.00353 * 25.57945 * 8 7 3 10 10 N 1.34779 * 119.99447 * 205.58051 * 8 7 3 11 11 C 1.46926 * 120.63219 * 0.95447 * 10 8 7 12 12 C 1.53191 * 108.88951 * 126.46847 * 11 10 8 13 13 C 1.53040 * 109.31725 * 54.56095 * 12 11 10 14 14 C 1.53037 * 109.53778 * 298.63618 * 13 12 11 15 15 H 1.08997 * 109.50011 * 301.37419 * 14 13 12 16 16 C 1.50706 * 109.49526 * 181.31226 * 14 13 12 17 17 H 1.07996 * 119.99763 * 359.97438 * 16 14 13 18 18 C 1.37877 * 119.99782 * 179.97438 * 16 14 13 19 19 N 1.31512 * 120.00031 * 180.02562 * 18 16 14 20 20 Si 1.86806 * 120.00044 * 0.02562 * 18 16 14 21 21 H 1.48503 * 109.46966 * 90.00106 * 20 18 16 22 22 H 1.48498 * 109.46966 * 210.00081 * 20 18 16 23 23 H 1.48500 * 109.47173 * 330.00198 * 20 18 16 24 24 C 1.46967 * 120.64936 * 180.77762 * 10 8 7 25 25 H 1.09001 * 109.46983 * 295.02235 * 1 2 3 26 26 H 1.08995 * 109.47527 * 55.02381 * 1 2 3 27 27 H 1.09006 * 109.46840 * 175.02704 * 1 2 3 28 28 H 1.08995 * 109.46935 * 239.99946 * 2 1 3 29 29 H 1.08998 * 109.47131 * 120.00088 * 2 1 3 30 30 H 1.08001 * 125.55831 * 359.97438 * 4 3 2 31 31 H 1.08001 * 126.07021 * 179.79053 * 5 4 3 32 32 H 1.08004 * 126.45894 * 180.02562 * 6 5 4 33 33 H 1.08994 * 109.58818 * 6.61229 * 11 10 8 34 34 H 1.08998 * 109.58591 * 246.32577 * 11 10 8 35 35 H 1.08998 * 109.49665 * 174.51810 * 12 11 10 36 36 H 1.09002 * 109.49582 * 294.60983 * 12 11 10 37 37 H 1.09004 * 109.45524 * 58.65530 * 13 12 11 38 38 H 1.08998 * 109.46368 * 178.61179 * 13 12 11 39 39 H 0.96997 * 120.00156 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.46243 * 113.75079 * 24 10 8 41 41 H 1.08993 * 109.70998 * 353.46114 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4358 2.0722 -1.0888 5 6 2.8187 3.3120 -0.7006 6 6 2.6302 3.4060 0.6819 7 6 2.1270 2.1943 1.1054 8 6 1.7776 1.8348 2.4839 9 8 1.7978 0.6690 2.8324 10 7 1.4340 2.7956 3.3644 11 6 1.3848 4.2052 2.9529 12 6 0.0106 4.7790 3.3121 13 6 -0.2607 4.5490 4.8006 14 6 -0.2733 3.0468 5.0924 15 1 -1.0392 2.5646 4.4851 16 6 -0.5724 2.8204 6.5521 17 1 -0.7367 3.6636 7.2066 18 6 -0.6362 1.5370 7.0517 19 7 -0.8978 1.3394 8.3253 20 14 -0.3513 0.0786 5.9195 21 1 1.0937 -0.2638 5.9076 22 1 -1.1321 -1.0865 6.4072 23 1 -0.7888 0.4270 4.5439 24 6 1.0978 2.4533 4.7535 25 1 -0.3633 0.4347 0.9312 26 1 -0.3634 0.5890 -0.8420 27 1 -0.3633 -1.0239 -0.0891 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.4634 1.6940 -2.1000 31 1 3.2012 4.0901 -1.3445 32 1 2.8391 4.2659 1.3011 33 1 1.5409 4.2773 1.8766 34 1 2.1619 4.7651 3.4732 35 1 -0.0038 5.8482 3.1006 36 1 -0.7576 4.2804 2.7210 37 1 0.5216 5.0270 5.3903 38 1 -1.2273 4.9782 5.0642 39 1 -0.9423 0.4365 8.6769 40 1 1.8513 2.8688 5.4225 41 1 1.0653 1.3698 4.8676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701201123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:00 Heat of formation + Delta-G solvation = 6.117948 kcal Electronic energy + Delta-G solvation = -22505.529491 eV Core-core repulsion = 19385.895106 eV Total energy + Delta-G solvation = -3119.634385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.53084 -40.62217 -38.44731 -35.70530 -34.93315 -33.66317 -32.43563 -30.38066 -30.22561 -27.02616 -26.63652 -24.56331 -23.64025 -22.85958 -21.70504 -20.90370 -19.90057 -18.97732 -18.15473 -17.64773 -16.70395 -16.46079 -16.19130 -15.83715 -15.46129 -15.29643 -15.10340 -14.87105 -14.75402 -14.28595 -14.02279 -13.81731 -13.47827 -13.43494 -13.20221 -13.12675 -12.95715 -12.57703 -12.36850 -12.26330 -12.15839 -11.67051 -11.60545 -11.29529 -11.09650 -10.85923 -10.81611 -9.69923 -9.63080 -9.09010 -8.43160 -6.44488 0.52591 1.17316 1.23475 1.35995 1.57143 1.88077 2.15785 2.26147 2.30703 2.93800 3.52071 3.74365 3.99360 4.00162 4.11978 4.13979 4.18364 4.31061 4.39913 4.41231 4.44532 4.52588 4.60317 4.65838 4.72826 4.78880 4.87764 4.94956 5.02939 5.11392 5.17882 5.20140 5.30588 5.36360 5.49797 5.59191 5.65770 5.89177 6.01840 6.22686 6.36857 6.45803 6.64257 7.09158 7.20999 8.72930 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.006669 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.463399 B = 4197.678073 C = 5089.519994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.090 3.910 3 N -0.418 5.418 4 C 0.024 3.976 5 C -0.211 4.211 6 C -0.147 4.147 7 C -0.082 4.082 8 C 0.568 3.432 9 O -0.603 6.603 10 N -0.596 5.596 11 C 0.071 3.929 12 C -0.126 4.126 13 C -0.099 4.099 14 C 0.005 3.995 15 H 0.010 0.990 16 C -0.510 4.510 17 H 0.054 0.946 18 C 0.031 3.969 19 N -0.935 5.935 20 Si 0.937 3.063 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.272 1.272 24 C 0.111 3.889 25 H 0.019 0.981 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.132 0.868 29 H 0.072 0.928 30 H 0.206 0.794 31 H 0.173 0.827 32 H 0.174 0.826 33 H 0.136 0.864 34 H 0.089 0.911 35 H 0.110 0.890 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.268 0.732 40 H 0.066 0.934 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.976 5.264 -23.845 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.031 4.031 3 N -0.091 5.091 4 C -0.111 4.111 5 C -0.234 4.234 6 C -0.173 4.173 7 C -0.195 4.195 8 C 0.359 3.641 9 O -0.487 6.487 10 N -0.327 5.327 11 C -0.049 4.049 12 C -0.164 4.164 13 C -0.136 4.136 14 C -0.014 4.014 15 H 0.028 0.972 16 C -0.548 4.548 17 H 0.072 0.928 18 C -0.168 4.168 19 N -0.575 5.575 20 Si 0.767 3.233 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.198 1.198 24 C -0.011 4.011 25 H 0.038 0.962 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.150 0.850 29 H 0.090 0.910 30 H 0.223 0.777 31 H 0.191 0.809 32 H 0.191 0.809 33 H 0.154 0.846 34 H 0.107 0.893 35 H 0.129 0.871 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.811 4.174 -23.472 24.794 hybrid contribution -0.157 -1.349 0.723 1.539 sum 6.654 2.825 -22.748 23.869 Atomic orbital electron populations 1.22049 0.94283 1.03995 1.01320 1.22117 0.95784 0.79760 1.05396 1.44280 1.46956 1.11733 1.06173 1.22751 1.02568 0.93275 0.92512 1.21227 1.09405 0.98218 0.94600 1.21969 1.03058 0.95325 0.96975 1.19887 1.17685 0.94646 0.87307 1.17764 0.76627 0.84593 0.85116 1.90723 1.57022 1.20499 1.80469 1.48121 1.65489 1.08790 1.10250 1.23008 0.98700 0.78738 1.04440 1.21940 0.96434 1.02582 0.95432 1.21399 1.01509 0.94404 0.96310 1.19411 0.91490 0.95998 0.94520 0.97209 1.21309 1.46837 0.92792 0.93911 0.92790 1.25584 0.94672 1.00941 0.95599 1.69973 1.50898 1.22488 1.14161 0.86075 0.77564 0.80157 0.79470 1.21075 1.21834 1.19762 1.22141 0.98959 0.99504 0.80515 0.96179 0.90308 0.88976 0.84990 0.90989 0.77718 0.80916 0.80927 0.84647 0.89281 0.87123 0.93057 0.91908 0.92462 0.92298 0.91552 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 10.23 71.98 0.74 -2.99 16 2 C 0.09 2.10 6.37 86.38 0.55 2.65 16 3 N -0.42 -10.48 2.76 -511.02 -1.41 -11.89 16 4 C 0.02 0.41 11.36 83.48 0.95 1.36 16 5 C -0.21 -3.62 10.81 22.01 0.24 -3.39 16 6 C -0.15 -3.34 8.55 22.57 0.19 -3.15 16 7 C -0.08 -2.53 6.52 40.35 0.26 -2.26 16 8 C 0.57 22.87 7.55 86.45 0.65 23.52 16 9 O -0.60 -29.23 14.56 -4.32 -0.06 -29.29 16 10 N -0.60 -23.09 2.98 -823.52 -2.45 -25.54 16 11 C 0.07 1.94 5.35 86.36 0.46 2.41 16 12 C -0.13 -3.51 6.08 30.67 0.19 -3.32 16 13 C -0.10 -3.67 5.11 30.62 0.16 -3.52 16 14 C 0.01 0.26 1.84 -11.46 -0.02 0.24 16 15 H 0.01 0.51 7.20 -2.39 -0.02 0.49 16 16 C -0.51 -29.47 9.14 25.60 0.23 -29.24 16 17 H 0.05 3.32 7.99 -2.91 -0.02 3.30 16 18 C 0.03 1.87 5.45 84.66 0.46 2.33 16 19 N -0.94 -59.54 13.96 21.45 0.30 -59.24 16 20 Si 0.94 51.38 24.33 68.60 1.67 53.04 16 21 H -0.28 -15.87 6.92 99.48 0.69 -15.18 16 22 H -0.29 -15.47 7.11 99.48 0.71 -14.76 16 23 H -0.27 -15.06 6.53 99.48 0.65 -14.41 16 24 C 0.11 5.22 5.11 86.36 0.44 5.66 16 25 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.13 1.86 8.11 -2.39 -0.02 1.84 16 29 H 0.07 2.21 6.60 -2.39 -0.02 2.19 16 30 H 0.21 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.17 3.17 5.77 -2.91 -0.02 3.16 16 33 H 0.14 3.02 3.40 -2.39 -0.01 3.01 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 40 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.05 2.55 2.34 -2.39 -0.01 2.55 16 Total: -1.00 -79.14 317.72 4.49 -74.65 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.95 Total: 7.96 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: 5.50 Total: -9.69 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -3.57 Total: -96.68 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.06 Total: -29.29 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 1.67 Total: 53.04 kcal Total: -79.14 4.49 -74.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701201123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.766 kcal (2) G-P(sol) polarization free energy of solvation -79.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds