Wall clock time and date at job start Thu Apr 9 2020 14:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47328 * 2 1 4 4 C 1.35527 * 125.67797 * 267.11252 * 3 2 1 5 5 C 1.35453 * 108.87302 * 180.02562 * 4 3 2 6 6 C 1.39845 * 107.86274 * 359.74382 * 5 4 3 7 7 C 1.37647 * 125.67468 * 87.13651 * 3 2 1 8 8 C 1.46675 * 126.23421 * 359.97438 * 7 3 2 9 9 O 1.21700 * 120.00199 * 332.37802 * 8 7 3 10 10 N 1.34779 * 120.00428 * 152.38234 * 8 7 3 11 11 C 1.46924 * 120.62743 * 351.32009 * 10 8 7 12 12 C 1.53201 * 108.77188 * 233.60560 * 11 10 8 13 13 C 1.53035 * 109.31223 * 305.36237 * 12 11 10 14 14 C 1.53039 * 109.53756 * 61.36591 * 13 12 11 15 15 H 1.09000 * 109.49965 * 58.61837 * 14 13 12 16 16 C 1.50700 * 109.49678 * 178.68170 * 14 13 12 17 17 H 1.07996 * 120.00267 * 5.32740 * 16 14 13 18 18 C 1.37884 * 119.99691 * 185.04827 * 16 14 13 19 19 N 1.31512 * 120.00428 * 355.58733 * 18 16 14 20 20 Si 1.86801 * 119.99696 * 175.58845 * 18 16 14 21 21 H 1.48499 * 109.47264 * 94.99781 * 20 18 16 22 22 H 1.48507 * 109.47077 * 214.99904 * 20 18 16 23 23 H 1.48497 * 109.47298 * 334.99323 * 20 18 16 24 24 C 1.46932 * 120.60669 * 171.33488 * 10 8 7 25 25 H 1.08993 * 109.46699 * 305.00533 * 1 2 3 26 26 H 1.09002 * 109.46802 * 65.00228 * 1 2 3 27 27 H 1.09002 * 109.47439 * 185.00128 * 1 2 3 28 28 H 1.09009 * 109.46929 * 240.00106 * 2 1 3 29 29 H 1.08993 * 109.47387 * 120.00434 * 2 1 3 30 30 H 1.07995 * 125.56825 * 0.04085 * 4 3 2 31 31 H 1.07997 * 126.07615 * 179.97438 * 5 4 3 32 32 H 1.07995 * 126.45898 * 180.26702 * 6 5 4 33 33 H 1.09000 * 109.59136 * 113.81684 * 11 10 8 34 34 H 1.09004 * 109.58838 * 353.38936 * 11 10 8 35 35 H 1.08994 * 109.49494 * 185.41058 * 12 11 10 36 36 H 1.09000 * 109.49198 * 65.31835 * 12 11 10 37 37 H 1.08998 * 109.46040 * 301.34354 * 13 12 11 38 38 H 1.08999 * 109.45730 * 181.38470 * 13 12 11 39 39 H 0.96997 * 120.00118 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.61763 * 6.61891 * 24 10 8 41 41 H 1.09001 * 109.56089 * 246.19430 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3342 2.1080 -1.0995 5 6 2.7484 3.3369 -0.7083 6 6 2.6853 3.3865 0.6878 7 6 2.2333 2.1567 1.1168 8 6 2.0153 1.7507 2.5092 9 8 1.1823 0.9034 2.7728 10 7 2.7374 2.3158 3.4970 11 6 3.8720 3.1958 3.1855 12 6 5.1113 2.6832 3.9260 13 6 4.7970 2.5678 5.4192 14 6 3.6606 1.5640 5.6270 15 1 3.9522 0.5952 5.2215 16 6 3.3736 1.4269 7.1000 17 1 3.8836 2.0602 7.8108 18 6 2.4557 0.4968 7.5399 19 7 1.7673 -0.2100 6.6703 20 14 2.1897 0.2407 9.3710 21 1 1.0411 1.0653 9.8245 22 1 1.9045 -1.1928 9.6341 23 1 3.4123 0.6457 10.1102 24 6 2.4046 2.0631 4.9057 25 1 -0.3632 0.5895 0.8417 26 1 -0.3633 0.4343 -0.9314 27 1 -0.3634 -1.0237 0.0896 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.2664 1.7637 -2.1208 31 1 3.0669 4.1376 -1.3592 32 1 2.9443 4.2287 1.3123 33 1 3.6465 4.2116 3.5100 34 1 4.0580 3.1859 2.1114 35 1 5.9362 3.3806 3.7807 36 1 5.3891 1.7040 3.5358 37 1 4.4954 3.5423 5.8032 38 1 5.6847 2.2267 5.9519 39 1 1.1213 -0.8640 6.9797 40 1 1.6229 1.3060 4.9668 41 1 2.0590 2.9865 5.3704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701201127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:02 Heat of formation + Delta-G solvation = 11.538513 kcal Electronic energy + Delta-G solvation = -22208.021471 eV Core-core repulsion = 19088.622139 eV Total energy + Delta-G solvation = -3119.399332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26611 -38.84944 -36.55167 -34.20201 -33.22814 -31.72141 -30.11945 -29.17771 -28.77321 -25.02790 -24.81487 -23.41591 -21.84850 -21.41973 -20.43642 -19.22646 -18.34458 -16.96863 -16.23821 -15.68299 -15.09232 -14.97725 -14.48523 -14.17509 -14.06516 -13.74174 -13.44036 -13.08692 -12.91841 -12.55592 -12.36156 -12.14117 -12.12768 -11.96407 -11.81720 -11.73920 -11.10080 -10.98752 -10.78472 -10.48948 -10.33653 -10.21343 -9.82983 -9.33172 -9.06416 -8.88822 -8.55086 -8.45195 -8.01671 -7.64853 -5.99026 -4.07162 1.87468 2.85368 2.93967 3.31164 3.38761 3.41670 3.75123 3.91924 4.44090 4.77048 4.96988 5.12681 5.14207 5.31440 5.33365 5.45719 5.51674 5.54918 5.60273 5.75581 5.81683 5.87276 6.06978 6.21740 6.23658 6.28611 6.33741 6.37652 6.65151 6.70044 6.86046 6.96377 7.00778 7.18314 7.19165 7.32470 7.40736 7.65812 7.88025 8.00797 8.27466 8.40309 8.87775 8.98254 9.58390 11.06676 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023422 B = 0.005363 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.157478 B = 5219.712666 C = 6159.294964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.409 5.409 4 C -0.001 4.001 5 C -0.210 4.210 6 C -0.159 4.159 7 C -0.029 4.029 8 C 0.572 3.428 9 O -0.540 6.540 10 N -0.592 5.592 11 C 0.093 3.907 12 C -0.133 4.133 13 C -0.111 4.111 14 C 0.041 3.959 15 H 0.030 0.970 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.117 3.883 25 H 0.076 0.924 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.162 0.838 31 H 0.138 0.862 32 H 0.146 0.854 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.262 0.738 40 H 0.118 0.882 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 4.941 -14.993 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.020 4.020 3 N -0.083 5.083 4 C -0.135 4.135 5 C -0.234 4.234 6 C -0.185 4.185 7 C -0.144 4.144 8 C 0.360 3.640 9 O -0.419 6.419 10 N -0.324 5.324 11 C -0.030 4.030 12 C -0.172 4.172 13 C -0.149 4.149 14 C 0.021 3.979 15 H 0.049 0.951 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.003 4.003 25 H 0.095 0.905 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.179 0.821 31 H 0.155 0.845 32 H 0.164 0.836 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.136 0.864 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.545 3.952 -14.809 15.405 hybrid contribution -0.135 -0.092 0.911 0.925 sum 1.410 3.860 -13.899 14.494 Atomic orbital electron populations 1.22080 0.93862 1.03259 1.02845 1.21916 0.96263 0.79648 1.04175 1.44101 1.47320 1.11731 1.05138 1.21867 1.07076 0.93181 0.91402 1.20760 1.10163 0.97407 0.95060 1.21466 1.05350 0.96488 0.95166 1.20511 1.12365 0.93291 0.88183 1.17101 0.82030 0.81749 0.83169 1.90815 1.35576 1.31660 1.83822 1.48214 1.29453 1.46874 1.07843 1.22165 0.86605 0.93294 1.00976 1.21948 0.96342 1.00790 0.98071 1.21638 1.00081 1.00340 0.92827 1.18970 0.89690 0.93868 0.95336 0.95139 1.21086 1.23844 1.19660 0.91348 0.92359 1.25058 0.95610 0.95716 0.97605 1.69926 1.24307 1.24137 1.33293 0.86596 0.78419 0.77429 0.85670 1.20737 1.21197 1.19857 1.22321 1.02672 1.00726 0.74614 0.90474 0.92829 0.90939 0.89692 0.88443 0.82057 0.84462 0.83604 0.92117 0.88980 0.92197 0.92333 0.93228 0.93050 0.92749 0.86377 0.93824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 10.13 37.16 0.38 -1.71 16 2 C 0.10 1.34 6.09 -4.04 -0.02 1.31 16 3 N -0.41 -6.05 2.76 -112.87 -0.31 -6.36 16 4 C 0.00 -0.01 11.37 -16.91 -0.19 -0.20 16 5 C -0.21 -2.60 10.81 -39.97 -0.43 -3.03 16 6 C -0.16 -2.31 8.44 -39.11 -0.33 -2.64 16 7 C -0.03 -0.50 6.33 -81.98 -0.52 -1.02 16 8 C 0.57 12.04 7.41 -12.85 -0.10 11.94 16 9 O -0.54 -13.12 14.07 5.19 0.07 -13.04 16 10 N -0.59 -12.27 2.97 -174.30 -0.52 -12.78 16 11 C 0.09 1.53 5.09 -3.71 -0.02 1.51 16 12 C -0.13 -2.24 6.08 -26.61 -0.16 -2.41 16 13 C -0.11 -2.25 5.11 -26.69 -0.14 -2.38 16 14 C 0.04 1.01 2.19 -91.65 -0.20 0.81 16 15 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 16 C -0.52 -14.17 8.50 -34.44 -0.29 -14.46 16 17 H 0.06 1.55 7.75 -52.49 -0.41 1.15 16 18 C 0.06 1.75 5.36 -17.82 -0.10 1.66 16 19 N -0.88 -25.73 11.61 55.43 0.64 -25.09 16 20 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.12 2.85 5.48 -3.71 -0.02 2.83 16 25 H 0.08 1.26 7.23 -51.93 -0.38 0.88 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.83 8.13 -51.92 -0.42 0.41 16 29 H 0.10 1.54 7.29 -51.93 -0.38 1.16 16 30 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.15 1.91 6.41 -52.49 -0.34 1.57 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 1.36 4.35 -51.93 -0.23 1.13 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.12 3.35 5.35 -51.93 -0.28 3.08 16 41 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 324.86 15.07 4.90 4.90 Total: -1.00 -31.46 324.86 -8.59 -40.05 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.21 Total: 3.84 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -2.14 Total: -7.79 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.19 Total: -44.23 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.07 Total: -13.04 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.46 -8.59 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701201127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.592 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds