Wall clock time and date at job start Thu Apr 9 2020 14:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47328 * 2 1 4 4 C 1.35527 * 125.67797 * 267.11252 * 3 2 1 5 5 C 1.35453 * 108.87302 * 180.02562 * 4 3 2 6 6 C 1.39845 * 107.86274 * 359.74382 * 5 4 3 7 7 C 1.37647 * 125.67468 * 87.13651 * 3 2 1 8 8 C 1.46675 * 126.23421 * 359.97438 * 7 3 2 9 9 O 1.21700 * 120.00199 * 332.37802 * 8 7 3 10 10 N 1.34779 * 120.00428 * 152.38234 * 8 7 3 11 11 C 1.46924 * 120.62743 * 351.32009 * 10 8 7 12 12 C 1.53201 * 108.77188 * 233.60560 * 11 10 8 13 13 C 1.53035 * 109.31223 * 305.36237 * 12 11 10 14 14 C 1.53039 * 109.53756 * 61.36591 * 13 12 11 15 15 H 1.09000 * 109.49965 * 58.61837 * 14 13 12 16 16 C 1.50700 * 109.49678 * 178.68170 * 14 13 12 17 17 H 1.07996 * 120.00267 * 5.32740 * 16 14 13 18 18 C 1.37884 * 119.99691 * 185.04827 * 16 14 13 19 19 N 1.31512 * 120.00428 * 355.58733 * 18 16 14 20 20 Si 1.86801 * 119.99696 * 175.58845 * 18 16 14 21 21 H 1.48499 * 109.47264 * 94.99781 * 20 18 16 22 22 H 1.48507 * 109.47077 * 214.99904 * 20 18 16 23 23 H 1.48497 * 109.47298 * 334.99323 * 20 18 16 24 24 C 1.46932 * 120.60669 * 171.33488 * 10 8 7 25 25 H 1.08993 * 109.46699 * 305.00533 * 1 2 3 26 26 H 1.09002 * 109.46802 * 65.00228 * 1 2 3 27 27 H 1.09002 * 109.47439 * 185.00128 * 1 2 3 28 28 H 1.09009 * 109.46929 * 240.00106 * 2 1 3 29 29 H 1.08993 * 109.47387 * 120.00434 * 2 1 3 30 30 H 1.07995 * 125.56825 * 0.04085 * 4 3 2 31 31 H 1.07997 * 126.07615 * 179.97438 * 5 4 3 32 32 H 1.07995 * 126.45898 * 180.26702 * 6 5 4 33 33 H 1.09000 * 109.59136 * 113.81684 * 11 10 8 34 34 H 1.09004 * 109.58838 * 353.38936 * 11 10 8 35 35 H 1.08994 * 109.49494 * 185.41058 * 12 11 10 36 36 H 1.09000 * 109.49198 * 65.31835 * 12 11 10 37 37 H 1.08998 * 109.46040 * 301.34354 * 13 12 11 38 38 H 1.08999 * 109.45730 * 181.38470 * 13 12 11 39 39 H 0.96997 * 120.00118 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.61763 * 6.61891 * 24 10 8 41 41 H 1.09001 * 109.56089 * 246.19430 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3342 2.1080 -1.0995 5 6 2.7484 3.3369 -0.7083 6 6 2.6853 3.3865 0.6878 7 6 2.2333 2.1567 1.1168 8 6 2.0153 1.7507 2.5092 9 8 1.1823 0.9034 2.7728 10 7 2.7374 2.3158 3.4970 11 6 3.8720 3.1958 3.1855 12 6 5.1113 2.6832 3.9260 13 6 4.7970 2.5678 5.4192 14 6 3.6606 1.5640 5.6270 15 1 3.9522 0.5952 5.2215 16 6 3.3736 1.4269 7.1000 17 1 3.8836 2.0602 7.8108 18 6 2.4557 0.4968 7.5399 19 7 1.7673 -0.2100 6.6703 20 14 2.1897 0.2407 9.3710 21 1 1.0411 1.0653 9.8245 22 1 1.9045 -1.1928 9.6341 23 1 3.4123 0.6457 10.1102 24 6 2.4046 2.0631 4.9057 25 1 -0.3632 0.5895 0.8417 26 1 -0.3633 0.4343 -0.9314 27 1 -0.3634 -1.0237 0.0896 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 2.2664 1.7637 -2.1208 31 1 3.0669 4.1376 -1.3592 32 1 2.9443 4.2287 1.3123 33 1 3.6465 4.2116 3.5100 34 1 4.0580 3.1859 2.1114 35 1 5.9362 3.3806 3.7807 36 1 5.3891 1.7040 3.5358 37 1 4.4954 3.5423 5.8032 38 1 5.6847 2.2267 5.9519 39 1 1.1213 -0.8640 6.9797 40 1 1.6229 1.3060 4.9668 41 1 2.0590 2.9865 5.3704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701201127.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:02 Heat of formation + Delta-G solvation = -7.197446 kcal Electronic energy + Delta-G solvation = -22208.833924 eV Core-core repulsion = 19088.622139 eV Total energy + Delta-G solvation = -3120.211784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.41405 -40.40623 -38.23203 -35.57841 -34.87101 -33.44036 -31.80951 -30.23411 -30.11881 -26.99390 -26.37933 -24.48435 -23.50583 -22.86494 -21.54537 -20.82637 -19.68417 -18.60145 -17.98378 -17.24069 -16.58910 -16.41845 -16.20625 -15.52562 -15.31471 -15.14325 -14.76719 -14.59381 -14.49657 -14.23112 -13.90455 -13.53841 -13.30864 -13.24395 -13.08370 -12.91588 -12.86480 -12.57221 -12.32238 -12.19561 -12.13003 -11.79193 -11.59471 -11.11121 -10.95263 -10.73850 -10.54885 -9.60336 -9.47661 -9.01812 -8.12530 -6.29415 0.63468 1.39620 1.40018 1.51882 1.71035 1.92676 2.34291 2.39758 2.46788 3.16283 3.67397 3.78507 4.09342 4.10269 4.17137 4.23556 4.32576 4.34894 4.49727 4.53661 4.58564 4.74210 4.76103 4.81698 4.85112 4.86334 5.08122 5.18349 5.22488 5.23532 5.26417 5.31742 5.36502 5.54523 5.62884 5.86077 5.94471 5.97778 6.06743 6.31976 6.43339 6.65934 6.84284 7.29631 7.41007 8.91701 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.023422 B = 0.005363 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.157478 B = 5219.712666 C = 6159.294964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.100 3.900 3 N -0.418 5.418 4 C 0.020 3.980 5 C -0.213 4.213 6 C -0.145 4.145 7 C -0.079 4.079 8 C 0.563 3.437 9 O -0.592 6.592 10 N -0.599 5.599 11 C 0.091 3.909 12 C -0.126 4.126 13 C -0.105 4.105 14 C 0.040 3.960 15 H -0.016 1.016 16 C -0.536 4.536 17 H 0.064 0.936 18 C 0.009 3.991 19 N -0.916 5.916 20 Si 0.959 3.041 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.261 1.261 24 C 0.131 3.869 25 H 0.031 0.969 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.129 0.871 29 H 0.058 0.942 30 H 0.206 0.794 31 H 0.172 0.828 32 H 0.160 0.840 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.042 0.958 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.259 0.741 40 H 0.070 0.930 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.825 7.071 -17.380 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 N -0.092 5.092 4 C -0.114 4.114 5 C -0.236 4.236 6 C -0.171 4.171 7 C -0.192 4.192 8 C 0.353 3.647 9 O -0.475 6.475 10 N -0.330 5.330 11 C -0.030 4.030 12 C -0.164 4.164 13 C -0.143 4.143 14 C 0.020 3.980 15 H 0.002 0.998 16 C -0.574 4.574 17 H 0.082 0.918 18 C -0.191 4.191 19 N -0.555 5.555 20 Si 0.784 3.216 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.185 1.185 24 C 0.009 3.991 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.147 0.853 29 H 0.076 0.924 30 H 0.223 0.777 31 H 0.190 0.810 32 H 0.177 0.823 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.124 0.876 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.142 6.120 -17.198 18.523 hybrid contribution -0.614 -0.744 1.542 1.818 sum 2.528 5.376 -15.656 16.746 Atomic orbital electron populations 1.22004 0.93827 1.03340 1.02103 1.21977 0.96313 0.79513 1.04327 1.44290 1.47499 1.12110 1.05257 1.22703 1.03848 0.92617 0.92255 1.21184 1.09785 0.98471 0.94145 1.21760 1.03266 0.95364 0.96736 1.20060 1.17091 0.95365 0.86718 1.17774 0.81075 0.80797 0.85062 1.90773 1.37700 1.34072 1.84918 1.48205 1.30808 1.47698 1.06280 1.22481 0.84715 0.93330 1.02480 1.21922 0.97959 1.01340 0.95169 1.21528 0.97951 0.99054 0.95748 1.18896 0.91762 0.93150 0.94160 0.99821 1.21520 1.23508 1.19571 0.92799 0.91804 1.25933 0.95393 0.95557 1.02182 1.70133 1.25049 1.24867 1.35433 0.85526 0.78749 0.77140 0.80155 1.20140 1.21286 1.18477 1.21717 1.01098 0.98897 0.77374 0.94933 0.90240 0.89870 0.85286 0.92379 0.77708 0.81042 0.82294 0.89791 0.86629 0.87595 0.93894 0.92110 0.92942 0.93202 0.91115 0.94107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 10.13 71.98 0.73 -3.28 16 2 C 0.10 2.61 6.09 86.38 0.53 3.14 16 3 N -0.42 -11.72 2.76 -511.02 -1.41 -13.13 16 4 C 0.02 0.41 11.37 83.48 0.95 1.36 16 5 C -0.21 -4.28 10.81 22.01 0.24 -4.04 16 6 C -0.14 -3.82 8.44 22.57 0.19 -3.63 16 7 C -0.08 -2.71 6.33 40.35 0.26 -2.45 16 8 C 0.56 25.04 7.41 86.45 0.64 25.68 16 9 O -0.59 -31.54 14.07 -4.35 -0.06 -31.60 16 10 N -0.60 -25.77 2.97 -823.57 -2.45 -28.22 16 11 C 0.09 2.87 5.09 86.37 0.44 3.30 16 12 C -0.13 -4.02 6.08 30.67 0.19 -3.84 16 13 C -0.11 -4.21 5.11 30.62 0.16 -4.06 16 14 C 0.04 2.07 2.19 -11.46 -0.03 2.05 16 15 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 16 C -0.54 -30.13 8.50 25.60 0.22 -29.91 16 17 H 0.06 3.43 7.75 -2.91 -0.02 3.41 16 18 C 0.01 0.50 5.36 84.66 0.45 0.95 16 19 N -0.92 -57.07 11.61 21.45 0.25 -56.82 16 20 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 C 0.13 6.81 5.48 86.36 0.47 7.28 16 25 H 0.03 1.12 7.23 -2.39 -0.02 1.11 16 26 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.13 2.17 8.13 -2.38 -0.02 2.15 16 29 H 0.06 1.97 7.29 -2.39 -0.02 1.96 16 30 H 0.21 2.19 8.06 -2.91 -0.02 2.16 16 31 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.16 3.63 6.41 -2.91 -0.02 3.61 16 33 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.12 3.12 4.35 -2.39 -0.01 3.11 16 35 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.07 4.37 5.35 -2.39 -0.01 4.36 16 41 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -76.60 324.86 4.80 -71.81 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.01 Total: 18.43 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 5.43 Total: -7.45 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -3.61 Total: -98.18 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.06 Total: -31.60 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -76.60 4.80 -71.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701201127.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.611 kcal (2) G-P(sol) polarization free energy of solvation -76.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds