Wall clock time and date at job start Thu Apr 9 2020 14:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47044 * 2 1 4 4 C 1.35588 * 125.68179 * 313.12700 * 3 2 1 5 5 C 1.35486 * 108.88005 * 180.15736 * 4 3 2 6 6 C 1.39798 * 107.88099 * 359.60573 * 5 4 3 7 7 C 1.37679 * 125.68532 * 132.84508 * 3 2 1 8 8 C 1.46552 * 126.23600 * 0.02562 * 7 3 2 9 9 O 1.21737 * 119.99778 * 130.96654 * 8 7 3 10 10 N 1.34772 * 119.99869 * 310.95740 * 8 7 3 11 11 C 1.36876 * 120.00085 * 0.02562 * 10 8 7 12 12 H 1.08002 * 120.00083 * 314.43732 * 11 10 8 13 13 C 1.39006 * 119.99856 * 134.44227 * 11 10 8 14 14 N 1.31402 * 120.00453 * 134.11220 * 13 11 10 15 15 Si 1.86805 * 119.99968 * 314.11041 * 13 11 10 16 16 H 1.48499 * 109.47103 * 96.41234 * 15 13 11 17 17 H 1.48502 * 109.47149 * 216.41023 * 15 13 11 18 18 H 1.48496 * 109.47112 * 336.40930 * 15 13 11 19 19 C 1.46502 * 119.99679 * 179.97438 * 10 8 7 20 20 C 1.54271 * 110.03158 * 229.71377 * 19 10 8 21 21 C 1.54969 * 104.15875 * 217.13835 * 20 19 10 22 22 C 1.54893 * 102.77623 * 37.88829 * 21 20 19 23 23 C 1.53873 * 110.03006 * 112.49678 * 19 10 8 24 24 H 1.09001 * 109.46518 * 105.23991 * 1 2 3 25 25 H 1.09000 * 109.47065 * 225.23476 * 1 2 3 26 26 H 1.08996 * 109.47667 * 345.24280 * 1 2 3 27 27 H 1.08993 * 109.47713 * 239.99823 * 2 1 3 28 28 H 1.09009 * 109.47368 * 119.99741 * 2 1 3 29 29 H 1.08000 * 125.55949 * 0.02562 * 4 3 2 30 30 H 1.08003 * 126.05909 * 179.87164 * 5 4 3 31 31 H 1.08001 * 126.45937 * 180.21988 * 6 5 4 32 32 H 0.96993 * 120.00143 * 184.99517 * 14 13 11 33 33 H 1.09002 * 110.01729 * 351.10819 * 19 10 8 34 34 H 1.08995 * 110.48468 * 335.78554 * 20 19 10 35 35 H 1.09002 * 110.48424 * 98.42860 * 20 19 10 36 36 H 1.09001 * 110.71997 * 279.57421 * 21 20 19 37 37 H 1.08999 * 110.92475 * 156.29605 * 21 20 19 38 38 H 1.08999 * 110.48562 * 203.40531 * 22 21 20 39 39 H 1.08994 * 110.59626 * 80.81804 * 22 21 20 40 40 H 1.08999 * 110.03256 * 238.56616 * 23 19 10 41 41 H 1.09002 * 110.03387 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.5720 2.3778 -0.8038 5 6 2.2592 3.5105 -0.5204 6 6 3.1641 3.2186 0.5044 7 6 3.0029 1.8849 0.8199 8 6 3.7449 1.1402 1.8410 9 8 4.9598 1.2077 1.8810 10 7 3.0823 0.3810 2.7359 11 6 1.7164 0.3049 2.6907 12 1 1.1292 1.2034 2.5708 13 6 1.0850 -0.9287 2.7992 14 7 0.0499 -1.0692 3.5963 15 14 1.7082 -2.3869 1.8118 16 1 2.6127 -3.2069 2.6572 17 1 0.5567 -3.2148 1.3713 18 1 2.4504 -1.8983 0.6221 19 6 3.8241 -0.3639 3.7563 20 6 3.3557 -1.8335 3.7827 21 6 3.3865 -2.2143 5.2846 22 6 2.8933 -0.9191 5.9764 23 6 3.5307 0.2173 5.1505 24 1 -0.3632 -0.2701 -0.9916 25 1 -0.3633 -0.7237 0.7296 26 1 -0.3634 0.9937 0.2618 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 0.7969 2.2835 -1.5499 30 1 2.1279 4.4702 -0.9982 31 1 3.8588 3.9070 0.9627 32 1 -0.3457 -1.9450 3.7277 33 1 4.8932 -0.3164 3.5494 34 1 2.3430 -1.9183 3.3885 35 1 4.0411 -2.4626 3.2147 36 1 4.4010 -2.4584 5.5998 37 1 2.7097 -3.0436 5.4899 38 1 3.2413 -0.8819 7.0087 39 1 1.8060 -0.8545 5.9388 40 1 4.4575 0.5459 5.6206 41 1 2.8368 1.0538 5.0679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701256315.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:05 Heat of formation + Delta-G solvation = 94.995798 kcal Electronic energy + Delta-G solvation = -23573.580537 eV Core-core repulsion = 20457.800184 eV Total energy + Delta-G solvation = -3115.780353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.70068 -38.99516 -36.77199 -34.63231 -33.06579 -32.36661 -28.97327 -28.49005 -28.34681 -26.83975 -25.21488 -22.98029 -21.88246 -20.37898 -19.57178 -19.42417 -18.62813 -17.86739 -16.77546 -15.52170 -15.12768 -14.87298 -14.78334 -14.16506 -14.05678 -13.45489 -13.33785 -12.76568 -12.62797 -12.46790 -12.14568 -11.97515 -11.79298 -11.63896 -11.47562 -11.21750 -11.17423 -10.98696 -10.75144 -10.55375 -10.45901 -10.29535 -9.81311 -9.52183 -9.12728 -8.76963 -8.60440 -7.93696 -7.72386 -7.33609 -6.79406 -4.17911 2.57580 2.85864 3.00166 3.09425 3.46061 3.68231 3.76247 4.04986 4.22948 4.66030 5.29088 5.37170 5.39767 5.53246 5.58814 5.62771 5.92068 5.95146 6.06298 6.07036 6.16922 6.22539 6.23961 6.28264 6.29464 6.33185 6.48084 6.49797 6.56148 6.64945 6.66247 6.82712 6.89235 6.93751 7.01147 7.02884 7.25934 7.62632 7.88304 7.91798 8.08245 8.23062 8.74827 9.26223 9.63324 10.16832 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.009734 C = 0.007643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.935765 B = 2875.726767 C = 3662.725380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.064 3.936 3 N -0.396 5.396 4 C -0.017 4.017 5 C -0.213 4.213 6 C -0.167 4.167 7 C 0.014 3.986 8 C 0.541 3.459 9 O -0.589 6.589 10 N -0.445 5.445 11 C -0.386 4.386 12 H 0.099 0.901 13 C 0.109 3.891 14 N -0.795 5.795 15 Si 0.786 3.214 16 H -0.244 1.244 17 H -0.285 1.285 18 H -0.244 1.244 19 C 0.134 3.866 20 C -0.168 4.168 21 C -0.113 4.113 22 C -0.115 4.115 23 C -0.118 4.118 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.279 0.721 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.434 -1.257 -1.804 2.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.056 4.056 3 N -0.069 5.069 4 C -0.151 4.151 5 C -0.238 4.238 6 C -0.193 4.193 7 C -0.101 4.101 8 C 0.331 3.669 9 O -0.473 6.473 10 N -0.164 5.164 11 C -0.510 4.510 12 H 0.116 0.884 13 C -0.103 4.103 14 N -0.424 5.424 15 Si 0.607 3.393 16 H -0.169 1.169 17 H -0.211 1.211 18 H -0.170 1.170 19 C 0.031 3.969 20 C -0.205 4.205 21 C -0.151 4.151 22 C -0.153 4.153 23 C -0.156 4.156 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.164 0.836 29 H 0.171 0.829 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.195 -1.679 -1.647 2.360 hybrid contribution -0.069 -0.833 -0.569 1.011 sum -0.264 -2.512 -2.215 3.360 Atomic orbital electron populations 1.22043 0.94184 1.04012 1.01084 1.23306 0.96113 0.80752 1.05393 1.44173 1.26923 1.08902 1.26918 1.21645 1.03976 0.88393 1.01119 1.20553 1.02155 0.97798 1.03266 1.20970 1.03389 0.93519 1.01416 1.20368 0.96385 0.94493 0.98849 1.17565 0.86021 0.82375 0.80939 1.90674 1.13393 1.67733 1.75476 1.43637 1.06445 1.41944 1.24388 1.18492 0.79576 0.94475 1.58424 0.88401 1.25520 0.93127 0.96846 0.94770 1.70106 1.21346 1.25092 1.25838 0.89884 0.80597 0.85405 0.83414 1.16941 1.21148 1.16955 1.21695 0.96252 0.90608 0.88385 1.24217 1.03235 0.95636 0.97396 1.22301 0.99923 0.97769 0.95116 1.22257 1.01787 0.94192 0.97082 1.22299 0.99763 0.99070 0.94492 0.93256 0.90942 0.90971 0.92460 0.83597 0.82922 0.85286 0.85079 0.90978 0.89818 0.88033 0.92496 0.92428 0.92352 0.93060 0.90326 0.93019 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.14 37.16 0.34 -2.44 16 2 C 0.06 1.30 4.02 -4.04 -0.02 1.28 16 3 N -0.40 -8.26 2.77 -112.85 -0.31 -8.58 16 4 C -0.02 -0.31 10.28 -16.87 -0.17 -0.48 16 5 C -0.21 -3.86 10.81 -39.98 -0.43 -4.30 16 6 C -0.17 -3.51 10.87 -39.09 -0.43 -3.93 16 7 C 0.01 0.33 5.69 -81.98 -0.47 -0.13 16 8 C 0.54 13.50 7.13 -12.91 -0.09 13.41 16 9 O -0.59 -15.77 16.48 5.16 0.08 -15.68 16 10 N -0.44 -10.60 1.93 -108.05 -0.21 -10.80 16 11 C -0.39 -9.28 5.34 -15.02 -0.08 -9.36 16 12 H 0.10 2.63 7.79 -52.49 -0.41 2.22 16 13 C 0.11 2.50 2.47 -17.45 -0.04 2.45 16 14 N -0.80 -18.78 13.95 52.78 0.74 -18.04 16 15 Si 0.79 16.85 20.88 -169.99 -3.55 13.30 16 16 H -0.24 -5.08 4.59 56.52 0.26 -4.82 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.24 -5.29 5.16 56.52 0.29 -4.99 16 19 C 0.13 2.94 3.27 -66.81 -0.22 2.72 16 20 C -0.17 -3.47 3.20 -25.03 -0.08 -3.55 16 21 C -0.11 -2.00 6.91 -24.69 -0.17 -2.17 16 22 C -0.12 -2.08 6.83 -25.07 -0.17 -2.25 16 23 C -0.12 -2.34 6.35 -25.61 -0.16 -2.50 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.39 5.82 -51.93 -0.30 1.09 16 26 H 0.07 1.30 7.36 -51.93 -0.38 0.92 16 27 H 0.06 1.08 7.99 -51.93 -0.41 0.66 16 28 H 0.15 3.24 0.60 -51.92 -0.03 3.21 16 29 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 30 H 0.13 1.94 8.06 -52.48 -0.42 1.51 16 31 H 0.13 2.58 8.06 -52.49 -0.42 2.16 16 32 H 0.28 6.18 8.31 -40.82 -0.34 5.84 16 33 H 0.08 1.88 6.99 -51.93 -0.36 1.52 16 34 H 0.10 2.24 0.88 -72.09 -0.06 2.17 16 35 H 0.06 1.15 7.05 -51.93 -0.37 0.78 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.68 7.63 -51.93 -0.40 1.29 16 LS Contribution 298.64 15.07 4.50 4.50 Total: -1.00 -26.63 298.64 -6.86 -33.49 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -5.92 Total: 13.05 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.19 Total: -11.25 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.22 Total: -37.42 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.08 Total: -15.68 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -3.55 Total: 13.30 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.63 -6.86 -33.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701256315.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.491 kcal (2) G-P(sol) polarization free energy of solvation -26.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds