Wall clock time and date at job start Thu Apr 9 2020 14:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47044 * 2 1 4 4 C 1.35588 * 125.68179 * 313.12700 * 3 2 1 5 5 C 1.35486 * 108.88005 * 180.15736 * 4 3 2 6 6 C 1.39798 * 107.88099 * 359.60573 * 5 4 3 7 7 C 1.37679 * 125.68532 * 132.84508 * 3 2 1 8 8 C 1.46552 * 126.23600 * 0.02562 * 7 3 2 9 9 O 1.21737 * 119.99778 * 130.96654 * 8 7 3 10 10 N 1.34772 * 119.99869 * 310.95740 * 8 7 3 11 11 C 1.36876 * 120.00085 * 0.02562 * 10 8 7 12 12 H 1.08002 * 120.00083 * 314.43732 * 11 10 8 13 13 C 1.39006 * 119.99856 * 134.44227 * 11 10 8 14 14 N 1.31402 * 120.00453 * 134.11220 * 13 11 10 15 15 Si 1.86805 * 119.99968 * 314.11041 * 13 11 10 16 16 H 1.48499 * 109.47103 * 96.41234 * 15 13 11 17 17 H 1.48502 * 109.47149 * 216.41023 * 15 13 11 18 18 H 1.48496 * 109.47112 * 336.40930 * 15 13 11 19 19 C 1.46502 * 119.99679 * 179.97438 * 10 8 7 20 20 C 1.54271 * 110.03158 * 229.71377 * 19 10 8 21 21 C 1.54969 * 104.15875 * 217.13835 * 20 19 10 22 22 C 1.54893 * 102.77623 * 37.88829 * 21 20 19 23 23 C 1.53873 * 110.03006 * 112.49678 * 19 10 8 24 24 H 1.09001 * 109.46518 * 105.23991 * 1 2 3 25 25 H 1.09000 * 109.47065 * 225.23476 * 1 2 3 26 26 H 1.08996 * 109.47667 * 345.24280 * 1 2 3 27 27 H 1.08993 * 109.47713 * 239.99823 * 2 1 3 28 28 H 1.09009 * 109.47368 * 119.99741 * 2 1 3 29 29 H 1.08000 * 125.55949 * 0.02562 * 4 3 2 30 30 H 1.08003 * 126.05909 * 179.87164 * 5 4 3 31 31 H 1.08001 * 126.45937 * 180.21988 * 6 5 4 32 32 H 0.96993 * 120.00143 * 184.99517 * 14 13 11 33 33 H 1.09002 * 110.01729 * 351.10819 * 19 10 8 34 34 H 1.08995 * 110.48468 * 335.78554 * 20 19 10 35 35 H 1.09002 * 110.48424 * 98.42860 * 20 19 10 36 36 H 1.09001 * 110.71997 * 279.57421 * 21 20 19 37 37 H 1.08999 * 110.92475 * 156.29605 * 21 20 19 38 38 H 1.08999 * 110.48562 * 203.40531 * 22 21 20 39 39 H 1.08994 * 110.59626 * 80.81804 * 22 21 20 40 40 H 1.08999 * 110.03256 * 238.56616 * 23 19 10 41 41 H 1.09002 * 110.03387 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.5720 2.3778 -0.8038 5 6 2.2592 3.5105 -0.5204 6 6 3.1641 3.2186 0.5044 7 6 3.0029 1.8849 0.8199 8 6 3.7449 1.1402 1.8410 9 8 4.9598 1.2077 1.8810 10 7 3.0823 0.3810 2.7359 11 6 1.7164 0.3049 2.6907 12 1 1.1292 1.2034 2.5708 13 6 1.0850 -0.9287 2.7992 14 7 0.0499 -1.0692 3.5963 15 14 1.7082 -2.3869 1.8118 16 1 2.6127 -3.2069 2.6572 17 1 0.5567 -3.2148 1.3713 18 1 2.4504 -1.8983 0.6221 19 6 3.8241 -0.3639 3.7563 20 6 3.3557 -1.8335 3.7827 21 6 3.3865 -2.2143 5.2846 22 6 2.8933 -0.9191 5.9764 23 6 3.5307 0.2173 5.1505 24 1 -0.3632 -0.2701 -0.9916 25 1 -0.3633 -0.7237 0.7296 26 1 -0.3634 0.9937 0.2618 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 0.7969 2.2835 -1.5499 30 1 2.1279 4.4702 -0.9982 31 1 3.8588 3.9070 0.9627 32 1 -0.3457 -1.9450 3.7277 33 1 4.8932 -0.3164 3.5494 34 1 2.3430 -1.9183 3.3885 35 1 4.0411 -2.4626 3.2147 36 1 4.4010 -2.4584 5.5998 37 1 2.7097 -3.0436 5.4899 38 1 3.2413 -0.8819 7.0087 39 1 1.8060 -0.8545 5.9388 40 1 4.4575 0.5459 5.6206 41 1 2.8368 1.0538 5.0679 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701256315.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:04 Heat of formation + Delta-G solvation = 79.876895 kcal Electronic energy + Delta-G solvation = -23574.236142 eV Core-core repulsion = 20457.800184 eV Total energy + Delta-G solvation = -3116.435957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.30611 -40.68737 -38.55190 -36.29544 -34.67241 -34.20021 -30.52291 -30.05022 -29.94113 -28.44400 -27.01891 -24.49366 -23.55234 -21.90930 -21.16267 -21.06533 -20.38076 -19.52226 -18.48084 -17.17837 -16.89269 -16.49717 -16.42884 -15.85540 -15.61954 -15.12972 -15.00701 -14.38893 -14.25623 -14.07085 -13.82122 -13.56053 -13.40073 -13.14294 -12.99944 -12.84371 -12.77273 -12.65600 -12.28369 -12.16567 -11.96425 -11.89417 -11.38655 -11.15391 -10.92169 -10.60985 -10.31645 -9.57307 -9.46969 -8.90603 -8.61070 -6.03864 0.89394 1.15025 1.29564 1.34698 1.89244 2.00615 2.14143 2.32351 2.45721 2.91024 3.72401 3.80842 3.91207 4.02109 4.13438 4.16971 4.34600 4.44938 4.51397 4.56128 4.63450 4.67007 4.67726 4.70666 4.81503 4.84476 4.89371 5.01923 5.05813 5.16747 5.20255 5.22879 5.28681 5.34865 5.44126 5.48079 5.59699 6.06046 6.09891 6.21870 6.35162 6.62933 6.90293 7.39004 7.79014 8.37986 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.019618 B = 0.009734 C = 0.007643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.935765 B = 2875.726767 C = 3662.725380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 N -0.401 5.401 4 C -0.005 4.005 5 C -0.213 4.213 6 C -0.177 4.177 7 C -0.034 4.034 8 C 0.525 3.475 9 O -0.624 6.624 10 N -0.442 5.442 11 C -0.388 4.388 12 H 0.061 0.939 13 C 0.106 3.894 14 N -0.817 5.817 15 Si 0.827 3.173 16 H -0.232 1.232 17 H -0.279 1.279 18 H -0.250 1.250 19 C 0.123 3.877 20 C -0.175 4.175 21 C -0.107 4.107 22 C -0.107 4.107 23 C -0.114 4.114 24 H 0.087 0.913 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.125 0.875 29 H 0.195 0.805 30 H 0.165 0.835 31 H 0.132 0.868 32 H 0.287 0.713 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 -2.215 -2.463 3.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.066 4.066 3 N -0.075 5.075 4 C -0.139 4.139 5 C -0.236 4.236 6 C -0.203 4.203 7 C -0.149 4.149 8 C 0.316 3.684 9 O -0.511 6.511 10 N -0.160 5.160 11 C -0.512 4.512 12 H 0.079 0.921 13 C -0.106 4.106 14 N -0.446 5.446 15 Si 0.647 3.353 16 H -0.157 1.157 17 H -0.205 1.205 18 H -0.176 1.176 19 C 0.020 3.980 20 C -0.212 4.212 21 C -0.144 4.144 22 C -0.145 4.145 23 C -0.153 4.153 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.142 0.858 29 H 0.212 0.788 30 H 0.183 0.817 31 H 0.150 0.850 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.870 -2.656 -2.290 3.613 hybrid contribution 0.087 -0.458 -0.360 0.589 sum -0.783 -3.114 -2.650 4.163 Atomic orbital electron populations 1.21976 0.92439 1.03191 1.02779 1.23336 0.97570 0.80698 1.04954 1.44268 1.26622 1.09591 1.27001 1.22391 1.03692 0.87387 1.00436 1.20950 1.00972 0.99453 1.02252 1.21272 1.03935 0.92976 1.02133 1.20351 0.98588 0.95520 1.00407 1.17999 0.85931 0.82868 0.81554 1.90613 1.14642 1.69225 1.76646 1.43734 1.06388 1.41624 1.24283 1.17976 0.79378 0.93649 1.60166 0.92111 1.25622 0.92932 0.97790 0.94218 1.70095 1.22121 1.26110 1.26295 0.89172 0.80517 0.83271 0.82312 1.15709 1.20524 1.17564 1.21904 0.95515 0.91647 0.88924 1.24247 1.02272 0.94741 0.99960 1.22336 1.01885 0.97729 0.92478 1.22184 1.00171 0.93514 0.98627 1.22257 1.00116 0.98853 0.94027 0.89453 0.92663 0.91598 0.91105 0.85776 0.78822 0.81749 0.85049 0.90199 0.90947 0.89296 0.92104 0.89744 0.91059 0.89758 0.92666 0.91126 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 9.14 71.98 0.66 -4.31 16 2 C 0.05 2.15 4.02 86.38 0.35 2.49 16 3 N -0.40 -16.54 2.77 -510.95 -1.42 -17.96 16 4 C 0.00 -0.17 10.28 83.48 0.86 0.69 16 5 C -0.21 -7.30 10.81 22.01 0.24 -7.06 16 6 C -0.18 -7.47 10.87 22.59 0.25 -7.23 16 7 C -0.03 -1.61 5.69 40.34 0.23 -1.38 16 8 C 0.53 27.29 7.13 86.41 0.62 27.91 16 9 O -0.62 -34.93 16.48 -4.47 -0.07 -35.01 16 10 N -0.44 -21.75 1.93 -613.97 -1.18 -22.94 16 11 C -0.39 -19.19 5.34 84.09 0.45 -18.74 16 12 H 0.06 3.44 7.79 -2.91 -0.02 3.42 16 13 C 0.11 4.88 2.47 84.94 0.21 5.09 16 14 N -0.82 -38.63 13.95 13.06 0.18 -38.45 16 15 Si 0.83 34.32 20.88 68.60 1.43 35.75 16 16 H -0.23 -9.16 4.59 99.48 0.46 -8.70 16 17 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 18 H -0.25 -10.61 5.16 99.48 0.51 -10.10 16 19 C 0.12 5.46 3.27 45.72 0.15 5.61 16 20 C -0.18 -7.06 3.20 31.70 0.10 -6.95 16 21 C -0.11 -3.49 6.91 31.91 0.22 -3.27 16 22 C -0.11 -3.69 6.83 31.67 0.22 -3.48 16 23 C -0.11 -4.54 6.35 31.32 0.20 -4.34 16 24 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.05 2.05 5.82 -2.39 -0.01 2.04 16 26 H 0.07 2.29 7.36 -2.39 -0.02 2.27 16 27 H 0.07 2.55 7.99 -2.39 -0.02 2.53 16 28 H 0.13 5.50 0.60 -2.38 0.00 5.50 16 29 H 0.19 4.79 8.06 -2.91 -0.02 4.77 16 30 H 0.17 4.37 8.06 -2.91 -0.02 4.35 16 31 H 0.13 5.34 8.06 -2.91 -0.02 5.31 16 32 H 0.29 12.54 8.31 -92.71 -0.77 11.77 16 33 H 0.07 3.33 6.99 -2.39 -0.02 3.32 16 34 H 0.09 3.84 0.88 -21.32 -0.02 3.82 16 35 H 0.06 2.37 7.05 -2.39 -0.02 2.35 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.05 2.19 7.63 -2.39 -0.02 2.17 16 Total: -1.00 -59.83 298.64 4.25 -55.58 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: 0.57 Total: 37.98 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 4.74 Total: -14.96 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -2.42 Total: -79.34 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.07 Total: -35.01 kcal Atomic # 14 Polarization: 34.32 SS G_CDS: 1.43 Total: 35.75 kcal Total: -59.83 4.25 -55.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701256315.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.454 kcal (2) G-P(sol) polarization free energy of solvation -59.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds