Wall clock time and date at job start Thu Apr 9 2020 14:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47355 * 2 1 4 4 C 1.53001 * 109.46810 * 119.99795 * 2 1 3 5 5 C 1.53000 * 109.47192 * 65.00272 * 4 2 1 6 6 C 1.53001 * 109.47192 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47211 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.47052 * 179.97438 * 7 6 5 9 9 C 1.42902 * 114.00031 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47264 * 179.97438 * 9 8 7 11 11 C 1.38632 * 119.75213 * 269.72235 * 10 9 8 12 12 C 1.37614 * 120.25123 * 179.71891 * 11 10 9 13 13 C 1.40719 * 119.74124 * 0.57305 * 12 11 10 14 14 C 1.41395 * 120.24246 * 179.67718 * 13 12 11 15 15 H 1.07998 * 119.99970 * 155.30784 * 14 13 12 16 16 C 1.39951 * 120.00207 * 335.31835 * 14 13 12 17 17 N 1.30818 * 119.99753 * 342.22830 * 16 14 13 18 18 Si 1.86797 * 120.00021 * 162.22875 * 16 14 13 19 19 H 1.48500 * 109.47048 * 94.66426 * 18 16 14 20 20 H 1.48498 * 109.47252 * 214.66382 * 18 16 14 21 21 H 1.48496 * 109.47461 * 334.66371 * 18 16 14 22 22 C 1.40704 * 119.51466 * 359.70404 * 13 12 11 23 23 C 1.37620 * 119.74516 * 359.97438 * 22 13 12 24 24 H 1.08995 * 109.47394 * 60.00161 * 1 2 3 25 25 H 1.08998 * 109.47265 * 180.02562 * 1 2 3 26 26 H 1.09012 * 109.46890 * 300.00167 * 1 2 3 27 27 H 1.09000 * 109.46874 * 239.99458 * 2 1 3 28 28 H 1.08996 * 109.47063 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46644 * 299.99664 * 3 2 1 30 30 H 1.08996 * 109.47122 * 59.99654 * 3 2 1 31 31 H 1.08997 * 109.47780 * 304.99756 * 4 2 1 32 32 H 1.09008 * 109.47030 * 184.99897 * 4 2 1 33 33 H 1.08993 * 109.47446 * 59.99550 * 5 4 2 34 34 H 1.08998 * 109.46709 * 299.99191 * 5 4 2 35 35 H 1.09006 * 109.47585 * 59.99609 * 6 5 4 36 36 H 1.09008 * 109.47030 * 299.99625 * 6 5 4 37 37 H 1.09002 * 109.47121 * 59.99977 * 7 6 5 38 38 H 1.08991 * 109.47294 * 299.99677 * 7 6 5 39 39 H 1.08998 * 109.47199 * 59.99761 * 9 8 7 40 40 H 1.09001 * 109.47096 * 299.99734 * 9 8 7 41 41 H 1.08005 * 119.87401 * 359.97438 * 11 10 9 42 42 H 1.07997 * 120.13194 * 180.28480 * 12 11 10 43 43 H 0.97004 * 119.99893 * 180.02562 * 17 16 14 44 44 H 1.08007 * 120.13445 * 179.97438 * 22 13 12 45 45 H 1.08000 * 119.87742 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1880 6 6 2.1446 -2.9165 2.4376 7 6 1.7393 -4.3906 2.3767 8 8 2.2156 -5.0642 3.5435 9 6 1.8892 -6.4548 3.5858 10 6 2.4378 -7.0613 4.8516 11 6 3.7143 -7.6020 4.8583 12 6 4.2277 -8.1533 6.0099 13 6 3.4470 -8.1776 7.1805 14 6 3.9614 -8.7475 8.3678 15 1 3.5770 -8.4349 9.3275 16 6 4.9689 -9.7165 8.2996 17 7 5.1948 -10.3471 7.1759 18 14 5.9908 -10.1096 9.8130 19 1 5.3997 -11.2737 10.5207 20 1 7.3803 -10.4338 9.4016 21 1 6.0047 -8.9339 10.7200 22 6 2.1506 -7.6311 7.1605 23 6 1.6602 -7.0789 5.9992 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6054 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 2.0697 -2.6550 0.3004 34 1 0.5489 -2.2723 1.1422 35 1 1.7096 -2.4569 3.3252 36 1 3.2309 -2.8397 2.4840 37 1 2.1740 -4.8505 1.4892 38 1 0.6530 -4.4672 2.3305 39 1 2.3269 -6.9571 2.7232 40 1 0.8060 -6.5745 3.5650 41 1 4.3097 -7.5869 3.9573 42 1 5.2241 -8.5698 6.0142 43 1 5.8928 -11.0190 7.1287 44 1 1.5426 -7.6447 8.0531 45 1 0.6656 -6.6585 5.9816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703525709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:07 Heat of formation + Delta-G solvation = -73.213719 kcal Electronic energy + Delta-G solvation = -20054.271286 eV Core-core repulsion = 17034.737165 eV Total energy + Delta-G solvation = -3019.534121 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.18072 -37.51478 -36.73664 -33.93307 -33.28156 -30.54666 -29.26345 -28.37929 -27.45302 -26.56799 -23.76127 -23.19188 -21.19496 -20.97248 -20.16735 -19.89594 -17.29666 -16.20240 -16.03305 -15.50083 -15.23183 -14.93068 -14.46746 -14.32493 -13.86895 -13.74416 -13.29736 -13.03119 -12.53984 -12.48271 -12.36870 -11.99691 -11.95659 -11.90951 -11.59744 -11.44749 -11.15765 -11.10935 -11.03111 -10.89217 -10.80741 -10.60204 -10.54851 -10.39404 -10.36313 -9.57442 -9.39691 -9.17202 -9.06312 -7.44880 -7.33507 -6.77659 -4.36142 2.69920 3.06627 3.09656 3.10247 3.16315 3.92503 4.11797 4.55231 4.61227 4.66386 4.77138 4.94023 5.13538 5.29597 5.30277 5.34246 5.42433 5.51077 5.57311 5.58616 5.67676 5.70569 5.75390 5.79716 5.83982 5.86908 5.89526 5.96875 6.06116 6.11930 6.20533 6.26915 6.30856 6.39720 6.42259 6.95960 7.06921 7.29328 7.37491 7.62211 7.71910 7.89445 8.05638 8.13534 8.29763 8.63982 8.88828 8.97600 10.16991 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.039117 B = 0.002288 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.638561 B =12237.057215 C =12439.260756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.115 4.115 5 C -0.118 4.118 6 C -0.118 4.118 7 C 0.059 3.941 8 O -0.384 6.384 9 C 0.129 3.871 10 C -0.222 4.222 11 C -0.080 4.080 12 C -0.169 4.169 13 C 0.115 3.885 14 C -0.461 4.461 15 H 0.078 0.922 16 C 0.075 3.925 17 N -0.791 5.791 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.230 4.230 23 C -0.070 4.070 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.281 0.719 44 H 0.093 0.907 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 14.309 -12.144 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.156 4.156 7 C -0.018 4.018 8 O -0.304 6.304 9 C 0.053 3.947 10 C -0.224 4.224 11 C -0.099 4.099 12 C -0.189 4.189 13 C 0.113 3.887 14 C -0.490 4.490 15 H 0.096 0.904 16 C -0.142 4.142 17 N -0.416 5.416 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.249 4.249 23 C -0.088 4.088 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.105 0.895 42 H 0.136 0.864 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.820 14.200 -12.099 19.268 hybrid contribution 0.311 -0.477 0.381 0.685 sum -4.509 13.723 -11.718 18.600 Atomic orbital electron populations 1.21902 0.95358 1.01922 1.01512 1.21138 0.95903 0.96099 0.98580 1.21846 1.00955 0.96122 1.01601 1.21647 1.00974 0.94927 0.97659 1.21567 1.01137 0.95043 0.97770 1.21517 1.02010 0.93735 0.98326 1.22400 0.97419 0.93007 0.88964 1.88072 1.78504 1.22819 1.41025 1.21086 0.97002 0.80227 0.96335 1.18766 0.97669 1.11520 0.94412 1.20526 0.94099 0.98139 0.97131 1.21290 1.00461 1.04199 0.92914 1.17657 0.89836 0.88271 0.92982 1.19617 1.16713 1.18589 0.94072 0.90359 1.25939 0.96319 0.94576 0.97415 1.69831 1.26869 1.17798 1.27130 0.86307 0.79151 0.79531 0.81796 1.19564 1.20012 1.18385 1.20953 0.96647 1.10433 0.96916 1.20370 0.97308 0.98202 0.92961 0.93035 0.92351 0.92726 0.91341 0.92731 0.92908 0.92721 0.91842 0.91868 0.92022 0.91738 0.91286 0.91268 0.94178 0.94203 0.94406 0.94496 0.89494 0.86401 0.90843 0.88904 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.95 37.16 0.33 -0.72 16 2 C -0.10 -0.73 2.92 -90.62 -0.26 -1.00 16 3 C -0.15 -1.00 9.19 37.16 0.34 -0.66 16 4 C -0.11 -0.96 4.68 -26.73 -0.13 -1.09 16 5 C -0.12 -1.09 4.97 -26.73 -0.13 -1.22 16 6 C -0.12 -1.42 5.58 -26.73 -0.15 -1.57 16 7 C 0.06 0.83 5.94 37.16 0.22 1.05 16 8 O -0.38 -7.29 10.33 -35.23 -0.36 -7.66 16 9 C 0.13 2.47 6.05 36.00 0.22 2.69 16 10 C -0.22 -5.15 5.53 -104.33 -0.58 -5.73 16 11 C -0.08 -1.96 9.67 -39.66 -0.38 -2.35 16 12 C -0.17 -4.53 8.70 -38.87 -0.34 -4.86 16 13 C 0.12 3.15 5.57 -106.83 -0.60 2.55 16 14 C -0.46 -12.39 9.05 -37.74 -0.34 -12.73 16 15 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 16 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 17 N -0.79 -20.59 10.97 55.55 0.61 -19.98 16 18 Si 0.91 18.73 29.59 -169.99 -5.03 13.70 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 22 C -0.23 -5.83 9.80 -38.88 -0.38 -6.21 16 23 C -0.07 -1.65 9.67 -39.66 -0.38 -2.03 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.42 6.56 -51.93 -0.34 0.07 16 26 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 41 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 42 H 0.12 3.22 6.18 -52.49 -0.32 2.90 16 43 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 44 H 0.09 2.20 8.06 -52.48 -0.42 1.78 16 45 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -28.13 365.31 -10.09 -38.22 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.16 Total: 2.27 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: -2.65 Total: -32.05 kcal Atomic # 7 Polarization: -20.59 SS G_CDS: 0.61 Total: -19.98 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.36 Total: -7.66 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.13 -10.09 -38.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703525709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.997 kcal (2) G-P(sol) polarization free energy of solvation -28.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds