Wall clock time and date at job start Thu Apr 9 2020 14:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47355 * 2 1 4 4 C 1.53001 * 109.46810 * 119.99795 * 2 1 3 5 5 C 1.53000 * 109.47192 * 65.00272 * 4 2 1 6 6 C 1.53001 * 109.47192 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47211 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.47052 * 179.97438 * 7 6 5 9 9 C 1.42902 * 114.00031 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47264 * 179.97438 * 9 8 7 11 11 C 1.38632 * 119.75213 * 269.72235 * 10 9 8 12 12 C 1.37614 * 120.25123 * 179.71891 * 11 10 9 13 13 C 1.40719 * 119.74124 * 0.57305 * 12 11 10 14 14 C 1.41395 * 120.24246 * 179.67718 * 13 12 11 15 15 H 1.07998 * 119.99970 * 155.30784 * 14 13 12 16 16 C 1.39951 * 120.00207 * 335.31835 * 14 13 12 17 17 N 1.30818 * 119.99753 * 342.22830 * 16 14 13 18 18 Si 1.86797 * 120.00021 * 162.22875 * 16 14 13 19 19 H 1.48500 * 109.47048 * 94.66426 * 18 16 14 20 20 H 1.48498 * 109.47252 * 214.66382 * 18 16 14 21 21 H 1.48496 * 109.47461 * 334.66371 * 18 16 14 22 22 C 1.40704 * 119.51466 * 359.70404 * 13 12 11 23 23 C 1.37620 * 119.74516 * 359.97438 * 22 13 12 24 24 H 1.08995 * 109.47394 * 60.00161 * 1 2 3 25 25 H 1.08998 * 109.47265 * 180.02562 * 1 2 3 26 26 H 1.09012 * 109.46890 * 300.00167 * 1 2 3 27 27 H 1.09000 * 109.46874 * 239.99458 * 2 1 3 28 28 H 1.08996 * 109.47063 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46644 * 299.99664 * 3 2 1 30 30 H 1.08996 * 109.47122 * 59.99654 * 3 2 1 31 31 H 1.08997 * 109.47780 * 304.99756 * 4 2 1 32 32 H 1.09008 * 109.47030 * 184.99897 * 4 2 1 33 33 H 1.08993 * 109.47446 * 59.99550 * 5 4 2 34 34 H 1.08998 * 109.46709 * 299.99191 * 5 4 2 35 35 H 1.09006 * 109.47585 * 59.99609 * 6 5 4 36 36 H 1.09008 * 109.47030 * 299.99625 * 6 5 4 37 37 H 1.09002 * 109.47121 * 59.99977 * 7 6 5 38 38 H 1.08991 * 109.47294 * 299.99677 * 7 6 5 39 39 H 1.08998 * 109.47199 * 59.99761 * 9 8 7 40 40 H 1.09001 * 109.47096 * 299.99734 * 9 8 7 41 41 H 1.08005 * 119.87401 * 359.97438 * 11 10 9 42 42 H 1.07997 * 120.13194 * 180.28480 * 12 11 10 43 43 H 0.97004 * 119.99893 * 180.02562 * 17 16 14 44 44 H 1.08007 * 120.13445 * 179.97438 * 22 13 12 45 45 H 1.08000 * 119.87742 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1880 6 6 2.1446 -2.9165 2.4376 7 6 1.7393 -4.3906 2.3767 8 8 2.2156 -5.0642 3.5435 9 6 1.8892 -6.4548 3.5858 10 6 2.4378 -7.0613 4.8516 11 6 3.7143 -7.6020 4.8583 12 6 4.2277 -8.1533 6.0099 13 6 3.4470 -8.1776 7.1805 14 6 3.9614 -8.7475 8.3678 15 1 3.5770 -8.4349 9.3275 16 6 4.9689 -9.7165 8.2996 17 7 5.1948 -10.3471 7.1759 18 14 5.9908 -10.1096 9.8130 19 1 5.3997 -11.2737 10.5207 20 1 7.3803 -10.4338 9.4016 21 1 6.0047 -8.9339 10.7200 22 6 2.1506 -7.6311 7.1605 23 6 1.6602 -7.0789 5.9992 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6054 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 2.0697 -2.6550 0.3004 34 1 0.5489 -2.2723 1.1422 35 1 1.7096 -2.4569 3.3252 36 1 3.2309 -2.8397 2.4840 37 1 2.1740 -4.8505 1.4892 38 1 0.6530 -4.4672 2.3305 39 1 2.3269 -6.9571 2.7232 40 1 0.8060 -6.5745 3.5650 41 1 4.3097 -7.5869 3.9573 42 1 5.2241 -8.5698 6.0142 43 1 5.8928 -11.0190 7.1287 44 1 1.5426 -7.6447 8.0531 45 1 0.6656 -6.6585 5.9816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703525709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:06 Heat of formation + Delta-G solvation = -84.966031 kcal Electronic energy + Delta-G solvation = -20054.780905 eV Core-core repulsion = 17034.737165 eV Total energy + Delta-G solvation = -3020.043740 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.77914 -38.73299 -37.84389 -35.69209 -34.32030 -32.31268 -31.19591 -29.46696 -28.19230 -27.97790 -25.31395 -24.29424 -22.92170 -22.18500 -21.65760 -20.76849 -19.25135 -17.41324 -17.26512 -17.13119 -16.47601 -16.23514 -15.70646 -15.50743 -15.12384 -14.94714 -14.60347 -14.30719 -13.99910 -13.83598 -13.52247 -13.35163 -13.08042 -12.92755 -12.86294 -12.75882 -12.59753 -12.41941 -12.30519 -12.13506 -11.95353 -11.72189 -11.45058 -11.44034 -11.34052 -11.26688 -11.21354 -11.01745 -10.44840 -9.40496 -9.29230 -8.66960 -6.37024 0.86614 1.12219 1.37631 1.46901 1.53939 2.19890 2.59758 3.05340 3.73690 3.93455 3.95629 4.04494 4.12860 4.22191 4.26778 4.35555 4.45817 4.50306 4.54340 4.57770 4.62122 4.66909 4.78046 4.83009 4.84589 4.93865 4.97945 5.01865 5.07001 5.13791 5.14314 5.15324 5.31421 5.33933 5.33972 5.40563 5.43254 5.55243 5.57718 5.67927 5.91441 6.07455 6.20050 6.34898 6.44559 6.66738 6.90772 7.00221 8.30614 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.039117 B = 0.002288 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.638561 B =12237.057215 C =12439.260756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.113 4.113 5 C -0.109 4.109 6 C -0.115 4.115 7 C 0.053 3.947 8 O -0.411 6.411 9 C 0.133 3.867 10 C -0.221 4.221 11 C -0.088 4.088 12 C -0.194 4.194 13 C 0.082 3.918 14 C -0.499 4.499 15 H 0.077 0.923 16 C 0.034 3.966 17 N -0.823 5.823 18 Si 0.985 3.015 19 H -0.260 1.260 20 H -0.265 1.265 21 H -0.259 1.259 22 C -0.247 4.247 23 C -0.074 4.074 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.289 0.711 44 H 0.100 0.900 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.666 15.095 -13.106 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.152 4.152 7 C -0.023 4.023 8 O -0.332 6.332 9 C 0.058 3.942 10 C -0.222 4.222 11 C -0.106 4.106 12 C -0.214 4.214 13 C 0.080 3.920 14 C -0.528 4.528 15 H 0.095 0.905 16 C -0.182 4.182 17 N -0.448 5.448 18 Si 0.805 3.195 19 H -0.185 1.185 20 H -0.189 1.189 21 H -0.183 1.183 22 C -0.266 4.266 23 C -0.092 4.092 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.123 0.877 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.118 0.882 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.434 14.998 -13.082 20.630 hybrid contribution 0.417 -0.638 0.553 0.942 sum -5.017 14.359 -12.529 19.707 Atomic orbital electron populations 1.21902 0.95001 1.01991 1.01788 1.21129 0.96188 0.96312 0.97988 1.21844 1.00959 0.95800 1.01915 1.21628 1.00787 0.94514 0.98149 1.21511 1.01544 0.95150 0.96482 1.21515 1.01406 0.92871 0.99447 1.22677 0.98437 0.93501 0.87671 1.88004 1.79258 1.22472 1.43461 1.20996 0.98053 0.80649 0.94510 1.19257 0.96838 1.10041 0.96054 1.20795 0.95107 0.97684 0.97035 1.21276 1.00191 1.05843 0.94043 1.18030 0.90960 0.89414 0.93639 1.19867 1.18770 1.20124 0.94000 0.90495 1.26825 0.96787 0.93757 1.00782 1.69877 1.27510 1.18261 1.29192 0.85161 0.77503 0.79357 0.77494 1.18505 1.18920 1.18306 1.21186 0.96331 1.10909 0.98195 1.20724 0.98635 0.97440 0.92392 0.92347 0.92368 0.92915 0.91132 0.92767 0.92187 0.92839 0.92196 0.92216 0.91352 0.90935 0.92085 0.92277 0.92926 0.92631 0.92989 0.92408 0.87727 0.87986 0.89994 0.88166 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 8.95 71.98 0.64 -1.17 16 2 C -0.10 -1.27 2.92 -10.79 -0.03 -1.30 16 3 C -0.15 -1.77 9.19 71.98 0.66 -1.11 16 4 C -0.11 -1.73 4.68 30.59 0.14 -1.58 16 5 C -0.11 -1.80 4.97 30.59 0.15 -1.65 16 6 C -0.11 -2.57 5.58 30.59 0.17 -2.40 16 7 C 0.05 1.37 5.94 71.98 0.43 1.80 16 8 O -0.41 -14.79 10.33 -148.98 -1.54 -16.33 16 9 C 0.13 4.80 6.05 71.24 0.43 5.23 16 10 C -0.22 -9.99 5.53 -19.67 -0.11 -10.10 16 11 C -0.09 -4.31 9.67 22.22 0.21 -4.09 16 12 C -0.19 -10.70 8.70 22.73 0.20 -10.50 16 13 C 0.08 4.62 5.57 -21.29 -0.12 4.50 16 14 C -0.50 -27.69 9.05 23.46 0.21 -27.47 16 15 H 0.08 4.11 7.91 -2.91 -0.02 4.08 16 16 C 0.03 1.73 5.14 85.26 0.44 2.17 16 17 N -0.82 -43.81 10.97 21.83 0.24 -43.58 16 18 Si 0.98 38.72 29.59 68.60 2.03 40.75 16 19 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 21 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 22 C -0.25 -12.69 9.80 22.73 0.22 -12.47 16 23 C -0.07 -3.41 9.67 22.22 0.21 -3.19 16 24 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.70 6.56 -2.39 -0.02 0.69 16 26 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.07 1.09 6.56 -2.39 -0.02 1.08 16 35 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 40 H 0.06 1.84 8.08 -2.39 -0.02 1.82 16 41 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 42 H 0.10 5.83 6.18 -2.91 -0.02 5.81 16 43 H 0.29 13.82 8.30 -92.71 -0.77 13.05 16 44 H 0.10 4.83 8.06 -2.91 -0.02 4.81 16 45 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -61.20 365.31 5.52 -55.68 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.92 Total: 26.82 kcal Atomic # 6 Polarization: -67.22 SS G_CDS: 3.87 Total: -63.35 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.24 Total: -43.58 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -1.54 Total: -16.33 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.75 kcal Total: -61.20 5.52 -55.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703525709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.285 kcal (2) G-P(sol) polarization free energy of solvation -61.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds