Wall clock time and date at job start Thu Apr 9 2020 14:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00319 * 2 1 4 4 H 1.48504 * 109.47016 * 270.00314 * 3 2 1 5 5 H 1.48502 * 109.46885 * 29.99615 * 3 2 1 6 6 H 1.48499 * 109.47393 * 150.00025 * 3 2 1 7 7 C 1.37881 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00317 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99670 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47135 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46940 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46940 * 179.97438 * 11 10 9 13 13 N 1.46504 * 109.47367 * 180.02562 * 12 11 10 14 14 C 1.46498 * 119.99776 * 269.99917 * 13 12 11 15 15 C 1.52996 * 109.46947 * 269.99791 * 14 13 12 16 16 C 1.53005 * 109.47197 * 179.97438 * 15 14 13 17 17 N 1.46899 * 109.47335 * 180.02562 * 16 15 14 18 18 C 1.39675 * 119.99988 * 89.99451 * 13 12 11 19 19 C 1.38914 * 120.07317 * 180.02562 * 18 13 12 20 20 C 1.38100 * 119.92419 * 179.97438 * 19 18 13 21 21 C 1.38288 * 120.07489 * 359.97438 * 20 19 18 22 22 C 1.38283 * 120.14964 * 0.27921 * 21 20 19 23 23 C 1.38104 * 120.07445 * 359.44998 * 22 21 20 24 24 H 0.97001 * 119.99718 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47250 * 59.99622 * 9 7 2 26 26 H 1.09002 * 109.47136 * 299.99937 * 9 7 2 27 27 H 1.08996 * 109.47038 * 59.99774 * 10 9 7 28 28 H 1.09002 * 109.46939 * 299.99913 * 10 9 7 29 29 H 1.08996 * 109.47314 * 60.00097 * 11 10 9 30 30 H 1.08997 * 109.47453 * 299.99327 * 11 10 9 31 31 H 1.09001 * 109.47478 * 59.99772 * 12 11 10 32 32 H 1.09007 * 109.46925 * 299.99601 * 12 11 10 33 33 H 1.09001 * 109.47265 * 29.99978 * 14 13 12 34 34 H 1.08996 * 109.46960 * 149.99772 * 14 13 12 35 35 H 1.09002 * 109.47422 * 299.99636 * 15 14 13 36 36 H 1.08996 * 109.47306 * 60.00193 * 15 14 13 37 37 H 1.09001 * 109.47145 * 300.00267 * 16 15 14 38 38 H 1.09001 * 109.46741 * 59.99422 * 16 15 14 39 39 H 1.00890 * 110.99949 * 56.04427 * 17 16 15 40 40 H 1.00899 * 110.99501 * 180.02562 * 17 16 15 41 41 H 1.07999 * 120.03471 * 359.95547 * 19 18 13 42 42 H 1.08000 * 119.95830 * 180.02562 * 20 19 18 43 43 H 1.08002 * 119.92149 * 179.97438 * 21 20 19 44 44 H 1.08001 * 119.96059 * 179.69879 * 22 21 20 45 45 H 1.07999 * 120.04050 * 180.27354 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 6 2.4743 -6.1500 -0.0024 13 7 1.7418 -7.4188 -0.0035 14 6 1.3751 -8.0540 1.2647 15 6 2.4967 -8.9963 1.7060 16 6 2.1141 -9.6593 3.0309 17 7 3.1912 -10.5636 3.4550 18 6 1.3930 -8.0227 -1.2137 19 6 0.6980 -9.2255 -1.2165 20 6 0.3542 -9.8197 -2.4148 21 6 0.7006 -9.2184 -3.6110 22 6 1.3970 -8.0237 -3.6118 23 6 1.7391 -7.4213 -2.4171 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 2.8712 -3.6047 0.8890 28 1 2.8725 -3.6039 -0.8910 29 1 0.8539 -5.0447 -0.8922 30 1 0.8532 -5.0450 0.8877 31 1 3.1010 -6.0927 0.8876 32 1 3.1010 -6.0920 -0.8924 33 1 1.2244 -7.2874 2.0248 34 1 0.4540 -8.6217 1.1336 35 1 2.6474 -9.7630 0.9460 36 1 3.4178 -8.4286 1.8371 37 1 1.9636 -8.8924 3.7908 38 1 1.1927 -10.2269 2.9003 39 1 4.0703 -10.0730 3.5208 40 1 2.9620 -11.0143 4.3281 41 1 0.4271 -9.6955 -0.2827 42 1 -0.1865 -10.7546 -2.4177 43 1 0.4308 -9.6854 -4.5467 44 1 1.6703 -7.5593 -4.5478 45 1 2.2791 -6.4860 -2.4183 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703947467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:10 Heat of formation + Delta-G solvation = 4.066934 kcal Electronic energy + Delta-G solvation = -20860.251438 eV Core-core repulsion = 17876.361209 eV Total energy + Delta-G solvation = -2983.890230 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.190 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.66749 -37.10107 -35.67300 -34.29029 -32.44367 -31.25722 -30.53926 -29.53986 -27.67604 -25.31074 -24.07553 -22.52069 -21.91910 -21.55357 -20.14647 -20.00874 -17.70196 -16.27962 -16.20970 -15.87738 -15.44697 -15.28104 -14.75897 -14.46462 -14.38967 -14.04650 -13.76398 -13.46541 -13.27049 -12.61811 -12.49640 -12.24568 -12.10015 -11.85862 -11.72417 -11.64579 -11.25619 -11.05819 -10.96417 -10.71931 -10.55327 -10.51011 -10.40741 -9.84314 -9.66622 -9.27244 -9.04633 -9.02162 -8.80011 -8.34068 -7.15529 -5.98854 -4.01403 1.56138 1.73925 3.14795 3.31827 3.37981 3.41184 4.01501 4.25988 4.46342 4.66834 4.85236 4.96809 5.04301 5.13568 5.14841 5.26464 5.31844 5.36742 5.41274 5.46780 5.56907 5.60015 5.66555 5.76543 5.79667 5.91161 6.02112 6.08454 6.13973 6.19646 6.43991 6.48738 6.60714 6.74319 6.76113 6.76963 6.92698 6.99311 7.07108 7.13887 7.41413 7.63910 7.69331 7.84420 8.01723 8.44180 9.06141 9.62600 11.12405 Molecular weight = 276.19amu Principal moments of inertia in cm(-1) A = 0.014843 B = 0.003541 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.960991 B = 7906.209752 C = 9363.589741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.135 4.135 12 C 0.122 3.878 13 N -0.624 5.624 14 C 0.125 3.875 15 C -0.137 4.137 16 C 0.062 3.938 17 N -0.853 5.853 18 C 0.223 3.777 19 C -0.202 4.202 20 C -0.076 4.076 21 C -0.187 4.187 22 C -0.073 4.073 23 C -0.195 4.195 24 H 0.260 0.740 25 H 0.015 0.985 26 H 0.014 0.986 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.341 0.659 40 H 0.341 0.659 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.118 0.882 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.364 -21.692 1.453 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.174 4.174 12 C 0.000 4.000 13 N -0.332 5.332 14 C 0.000 4.000 15 C -0.176 4.176 16 C -0.069 4.069 17 N -0.382 5.382 18 C 0.121 3.879 19 C -0.224 4.224 20 C -0.095 4.095 21 C -0.207 4.207 22 C -0.092 4.092 23 C -0.217 4.217 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.105 -21.872 0.959 22.112 hybrid contribution 0.446 1.674 0.878 1.943 sum 3.552 -20.198 1.838 20.590 Atomic orbital electron populations 1.69968 1.06065 1.26540 1.50942 1.25036 0.94840 0.99249 0.95396 0.86612 0.79839 0.83545 0.78109 1.20658 1.21240 1.19897 1.21280 0.93002 0.91186 1.50436 0.92751 1.19077 0.93986 0.91333 0.97108 1.21574 0.99083 0.93836 1.00124 1.22077 0.98546 0.94675 1.02052 1.21623 0.94115 0.82075 1.02227 1.46666 1.61123 1.23088 1.02365 1.21328 0.96981 0.96015 0.85655 1.22040 0.99427 0.99107 0.97063 1.21730 0.94901 0.94339 0.95939 1.58694 1.05645 1.35826 1.38047 1.17864 0.92576 0.91537 0.85942 1.20646 1.06279 0.97084 0.98441 1.20824 0.97838 0.98697 0.92130 1.20842 1.04524 0.97748 0.97627 1.20895 0.96236 0.94791 0.97251 1.20797 1.07368 1.02399 0.91142 0.93034 0.96699 0.96803 0.93516 0.93408 0.92136 0.92509 0.91235 0.90885 0.90728 0.90779 0.90806 0.91941 0.95372 0.90994 0.84720 0.84708 0.86376 0.86684 0.86909 0.86426 0.85769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.11 -2.18 5.15 -26.73 -0.14 -2.32 16 11 C -0.13 -2.27 5.54 -26.73 -0.15 -2.42 16 12 C 0.12 1.66 5.16 -4.04 -0.02 1.64 16 13 N -0.62 -7.94 2.61 -171.75 -0.45 -8.39 16 14 C 0.12 1.30 5.16 -4.04 -0.02 1.28 16 15 C -0.14 -1.29 5.80 -26.73 -0.15 -1.45 16 16 C 0.06 0.50 6.79 -3.82 -0.03 0.47 16 17 N -0.85 -6.54 9.62 -10.37 -0.10 -6.64 16 18 C 0.22 3.02 6.55 -83.79 -0.55 2.47 16 19 C -0.20 -2.48 9.21 -39.38 -0.36 -2.85 16 20 C -0.08 -0.88 10.04 -39.61 -0.40 -1.27 16 21 C -0.19 -2.19 10.04 -39.55 -0.40 -2.59 16 22 C -0.07 -0.91 10.04 -39.61 -0.40 -1.31 16 23 C -0.19 -2.68 9.21 -39.38 -0.36 -3.04 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.07 0.98 6.20 -51.92 -0.32 0.66 16 33 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.07 0.73 6.20 -51.93 -0.32 0.41 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.34 2.36 8.99 -39.30 -0.35 2.00 16 40 H 0.34 2.03 9.08 -39.29 -0.36 1.68 16 41 H 0.12 1.28 6.14 -52.49 -0.32 0.96 16 42 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.12 1.72 6.14 -52.49 -0.32 1.39 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -31.29 365.13 -10.73 -42.02 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -7.87 Total: 1.91 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -3.52 Total: -24.63 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.19 Total: -41.59 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.29 -10.73 -42.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703947467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.089 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds