Wall clock time and date at job start Thu Apr 9 2020 14:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86803 * 120.00319 * 2 1 4 4 H 1.48504 * 109.47016 * 270.00314 * 3 2 1 5 5 H 1.48502 * 109.46885 * 29.99615 * 3 2 1 6 6 H 1.48499 * 109.47393 * 150.00025 * 3 2 1 7 7 C 1.37881 * 120.00174 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00317 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99670 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47135 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46940 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46940 * 179.97438 * 11 10 9 13 13 N 1.46504 * 109.47367 * 180.02562 * 12 11 10 14 14 C 1.46498 * 119.99776 * 269.99917 * 13 12 11 15 15 C 1.52996 * 109.46947 * 269.99791 * 14 13 12 16 16 C 1.53005 * 109.47197 * 179.97438 * 15 14 13 17 17 N 1.46899 * 109.47335 * 180.02562 * 16 15 14 18 18 C 1.39675 * 119.99988 * 89.99451 * 13 12 11 19 19 C 1.38914 * 120.07317 * 180.02562 * 18 13 12 20 20 C 1.38100 * 119.92419 * 179.97438 * 19 18 13 21 21 C 1.38288 * 120.07489 * 359.97438 * 20 19 18 22 22 C 1.38283 * 120.14964 * 0.27921 * 21 20 19 23 23 C 1.38104 * 120.07445 * 359.44998 * 22 21 20 24 24 H 0.97001 * 119.99718 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47250 * 59.99622 * 9 7 2 26 26 H 1.09002 * 109.47136 * 299.99937 * 9 7 2 27 27 H 1.08996 * 109.47038 * 59.99774 * 10 9 7 28 28 H 1.09002 * 109.46939 * 299.99913 * 10 9 7 29 29 H 1.08996 * 109.47314 * 60.00097 * 11 10 9 30 30 H 1.08997 * 109.47453 * 299.99327 * 11 10 9 31 31 H 1.09001 * 109.47478 * 59.99772 * 12 11 10 32 32 H 1.09007 * 109.46925 * 299.99601 * 12 11 10 33 33 H 1.09001 * 109.47265 * 29.99978 * 14 13 12 34 34 H 1.08996 * 109.46960 * 149.99772 * 14 13 12 35 35 H 1.09002 * 109.47422 * 299.99636 * 15 14 13 36 36 H 1.08996 * 109.47306 * 60.00193 * 15 14 13 37 37 H 1.09001 * 109.47145 * 300.00267 * 16 15 14 38 38 H 1.09001 * 109.46741 * 59.99422 * 16 15 14 39 39 H 1.00890 * 110.99949 * 56.04427 * 17 16 15 40 40 H 1.00899 * 110.99501 * 180.02562 * 17 16 15 41 41 H 1.07999 * 120.03471 * 359.95547 * 19 18 13 42 42 H 1.08000 * 119.95830 * 180.02562 * 20 19 18 43 43 H 1.08002 * 119.92149 * 179.97438 * 21 20 19 44 44 H 1.08001 * 119.96059 * 179.69879 * 22 21 20 45 45 H 1.07999 * 120.04050 * 180.27354 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4801 -4.9871 -0.0020 12 6 2.4743 -6.1500 -0.0024 13 7 1.7418 -7.4188 -0.0035 14 6 1.3751 -8.0540 1.2647 15 6 2.4967 -8.9963 1.7060 16 6 2.1141 -9.6593 3.0309 17 7 3.1912 -10.5636 3.4550 18 6 1.3930 -8.0227 -1.2137 19 6 0.6980 -9.2255 -1.2165 20 6 0.3542 -9.8197 -2.4148 21 6 0.7006 -9.2184 -3.6110 22 6 1.3970 -8.0237 -3.6118 23 6 1.7391 -7.4213 -2.4171 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6240 -2.5575 0.8880 27 1 2.8712 -3.6047 0.8890 28 1 2.8725 -3.6039 -0.8910 29 1 0.8539 -5.0447 -0.8922 30 1 0.8532 -5.0450 0.8877 31 1 3.1010 -6.0927 0.8876 32 1 3.1010 -6.0920 -0.8924 33 1 1.2244 -7.2874 2.0248 34 1 0.4540 -8.6217 1.1336 35 1 2.6474 -9.7630 0.9460 36 1 3.4178 -8.4286 1.8371 37 1 1.9636 -8.8924 3.7908 38 1 1.1927 -10.2269 2.9003 39 1 4.0703 -10.0730 3.5208 40 1 2.9620 -11.0143 4.3281 41 1 0.4271 -9.6955 -0.2827 42 1 -0.1865 -10.7546 -2.4177 43 1 0.4308 -9.6854 -4.5467 44 1 1.6703 -7.5593 -4.5478 45 1 2.2791 -6.4860 -2.4183 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703947467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:09 Heat of formation + Delta-G solvation = -13.367126 kcal Electronic energy + Delta-G solvation = -20861.007436 eV Core-core repulsion = 17876.361209 eV Total energy + Delta-G solvation = -2984.646227 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.62493 -38.05157 -36.75421 -35.74804 -34.25462 -32.25968 -31.44340 -30.91263 -28.97028 -26.77081 -25.19964 -23.87705 -22.92902 -22.39690 -21.84330 -21.05173 -18.66914 -18.43575 -17.00239 -16.74334 -16.54933 -16.32111 -16.20141 -15.96458 -15.24874 -15.10421 -14.76051 -14.54111 -14.34934 -14.16644 -13.75166 -13.67303 -13.37482 -13.14301 -12.95697 -12.81787 -12.49348 -12.38288 -12.27472 -12.13777 -12.06735 -11.80121 -11.54163 -11.40629 -11.36753 -11.16302 -10.61364 -10.56979 -9.75123 -9.62396 -8.22612 -8.12780 -6.32856 0.61112 0.78754 1.38856 1.40527 1.51652 2.18294 2.40216 3.06946 3.11775 3.63910 3.86571 3.91299 4.10984 4.16697 4.19883 4.24016 4.38533 4.42943 4.45601 4.50759 4.53966 4.60451 4.69538 4.74769 4.79237 4.83564 4.91531 4.93449 5.11105 5.13807 5.24441 5.27128 5.29678 5.32371 5.48417 5.53459 5.68781 5.74893 5.81763 5.85252 6.07504 6.21174 6.23843 6.42660 6.57729 6.66180 6.85007 7.36785 8.90853 Molecular weight = 276.19amu Principal moments of inertia in cm(-1) A = 0.014843 B = 0.003541 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.960991 B = 7906.209752 C = 9363.589741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.024 3.976 10 C -0.095 4.095 11 C -0.120 4.120 12 C 0.133 3.867 13 N -0.627 5.627 14 C 0.123 3.877 15 C -0.123 4.123 16 C 0.066 3.934 17 N -0.861 5.861 18 C 0.206 3.794 19 C -0.208 4.208 20 C -0.079 4.079 21 C -0.192 4.192 22 C -0.084 4.084 23 C -0.218 4.218 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.013 1.013 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.344 0.656 40 H 0.351 0.649 41 H 0.131 0.869 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.130 0.870 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.352 -22.608 1.710 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.013 4.013 10 C -0.133 4.133 11 C -0.159 4.159 12 C 0.010 3.990 13 N -0.336 5.336 14 C -0.001 4.001 15 C -0.163 4.163 16 C -0.066 4.066 17 N -0.392 5.392 18 C 0.104 3.896 19 C -0.230 4.230 20 C -0.098 4.098 21 C -0.212 4.212 22 C -0.103 4.103 23 C -0.240 4.240 24 H 0.072 0.928 25 H 0.003 0.997 26 H 0.006 0.994 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.149 0.851 42 H 0.159 0.841 43 H 0.153 0.847 44 H 0.148 0.852 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.101 -22.817 1.224 23.215 hybrid contribution 0.075 1.913 0.765 2.062 sum 4.176 -20.904 1.989 21.410 Atomic orbital electron populations 1.70110 1.07928 1.27760 1.51783 1.26036 0.95778 1.03543 0.94733 0.85430 0.78715 0.78281 0.78525 1.19785 1.20749 1.18495 1.21746 0.93629 0.92411 1.50392 0.91978 1.19002 0.94484 0.93463 0.94329 1.21369 0.97917 0.93212 1.00796 1.21888 0.98668 0.94505 1.00874 1.21397 0.93174 0.81368 1.03081 1.46673 1.61248 1.22668 1.03000 1.21446 0.97685 0.96217 0.84702 1.21876 0.98709 0.98327 0.97368 1.21673 0.95145 0.94533 0.95218 1.58684 1.05782 1.35898 1.38854 1.18078 0.93235 0.92267 0.86040 1.20880 1.05936 0.96721 0.99506 1.21193 0.97354 0.99496 0.91710 1.21168 1.03815 0.97368 0.98811 1.21153 0.96348 0.95338 0.97421 1.20903 1.08434 1.02609 0.92069 0.92803 0.99737 0.99411 0.92481 0.92892 0.93901 0.93076 0.89714 0.90669 0.90616 0.90088 0.92155 0.92444 0.94856 0.90608 0.84298 0.83600 0.85092 0.84100 0.84735 0.85160 0.86672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.14 13.29 21.45 0.28 -57.86 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.54 -31.48 9.11 25.60 0.23 -31.24 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.32 4.97 29.85 0.15 1.46 16 10 C -0.09 -3.86 5.15 30.59 0.16 -3.70 16 11 C -0.12 -4.11 5.54 30.59 0.17 -3.94 16 12 C 0.13 3.55 5.16 86.38 0.45 4.00 16 13 N -0.63 -15.61 2.61 -697.29 -1.82 -17.42 16 14 C 0.12 2.44 5.16 86.38 0.45 2.89 16 15 C -0.12 -2.17 5.80 30.59 0.18 -1.99 16 16 C 0.07 0.95 6.79 86.31 0.59 1.53 16 17 N -0.86 -11.85 9.62 -186.71 -1.80 -13.65 16 18 C 0.21 5.47 6.55 38.21 0.25 5.72 16 19 C -0.21 -4.85 9.21 22.40 0.21 -4.65 16 20 C -0.08 -1.67 10.04 22.25 0.22 -1.44 16 21 C -0.19 -4.17 10.04 22.29 0.22 -3.94 16 22 C -0.08 -2.05 10.04 22.25 0.22 -1.83 16 23 C -0.22 -6.02 9.21 22.40 0.21 -5.81 16 24 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 25 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 26 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 32 H 0.08 1.99 6.20 -2.38 -0.01 1.98 16 33 H 0.08 1.49 8.07 -2.39 -0.02 1.47 16 34 H 0.08 1.49 6.20 -2.39 -0.01 1.48 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.34 4.27 8.99 -89.70 -0.81 3.46 16 40 H 0.35 3.60 9.08 -89.69 -0.81 2.79 16 41 H 0.13 2.62 6.14 -2.91 -0.02 2.60 16 42 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 44 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 45 H 0.12 3.28 6.14 -2.91 -0.02 3.26 16 Total: -1.00 -67.66 365.13 2.19 -65.47 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.66 Total: 19.44 kcal Atomic # 6 Polarization: -46.84 SS G_CDS: 4.16 Total: -42.68 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -3.33 Total: -88.93 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -67.66 2.19 -65.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703947467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.100 kcal (2) G-P(sol) polarization free energy of solvation -67.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds