Wall clock time and date at job start Thu Apr 9 2020 14:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99872 * 2 1 4 4 C 1.53782 * 113.61329 * 210.00032 * 3 2 1 5 5 C 1.53781 * 87.08074 * 219.93650 * 4 3 2 6 6 C 1.52995 * 113.61147 * 139.98304 * 5 4 3 7 7 N 1.46506 * 109.47246 * 176.53024 * 6 5 4 8 8 C 1.39846 * 120.00548 * 180.02562 * 7 6 5 9 9 C 1.39607 * 119.83516 * 0.28722 * 8 7 6 10 10 C 1.38056 * 120.54483 * 180.26154 * 9 8 7 11 11 C 1.38740 * 120.22498 * 359.44980 * 10 9 8 12 12 N 1.38860 * 120.16669 * 180.25429 * 11 10 9 13 13 C 1.41568 * 119.66705 * 0.27272 * 11 10 9 14 14 C 1.41025 * 120.26465 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00049 * 333.62874 * 14 13 11 16 16 C 1.39884 * 119.99907 * 153.62145 * 14 13 11 17 17 N 1.30895 * 120.00173 * 343.97837 * 16 14 13 18 18 Si 1.86803 * 119.99694 * 163.97393 * 16 14 13 19 19 H 1.48495 * 109.47046 * 60.00596 * 18 16 14 20 20 H 1.48502 * 109.46681 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47380 * 300.00153 * 18 16 14 22 22 C 1.37996 * 119.84411 * 179.97438 * 8 7 6 23 23 C 1.53778 * 87.17139 * 25.38955 * 5 4 3 24 24 H 1.08994 * 109.47163 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46829 * 299.99902 * 1 2 3 26 26 H 1.09003 * 109.47026 * 59.99402 * 1 2 3 27 27 H 1.09000 * 112.84941 * 341.19334 * 3 2 1 28 28 H 1.09001 * 113.61247 * 105.38892 * 4 3 2 29 29 H 1.08995 * 113.61619 * 334.48951 * 4 3 2 30 30 H 1.08998 * 113.61508 * 270.79956 * 5 4 3 31 31 H 1.09001 * 109.47487 * 56.52733 * 6 5 4 32 32 H 1.09002 * 109.47363 * 296.52489 * 6 5 4 33 33 H 0.97007 * 119.99546 * 359.97438 * 7 6 5 34 34 H 1.07998 * 119.73143 * 0.02562 * 9 8 7 35 35 H 1.08004 * 119.88860 * 179.72377 * 10 9 8 36 36 H 0.97002 * 120.00307 * 359.97438 * 12 11 10 37 37 H 0.96999 * 120.00104 * 179.97438 * 12 11 10 38 38 H 0.97004 * 120.00145 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.11315 * 359.97438 * 22 8 7 40 40 H 1.09005 * 113.61182 * 89.15980 * 23 5 4 41 41 H 1.09002 * 113.61416 * 220.05538 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3756 1.3719 -0.7045 5 6 3.8220 2.3199 0.4210 6 6 5.2537 2.0713 0.8998 7 7 5.6120 3.0716 1.9084 8 6 6.8806 3.0484 2.4966 9 6 7.8050 2.0740 2.1158 10 6 9.0595 2.0341 2.6908 11 6 9.4192 2.9720 3.6478 12 7 10.6831 2.9340 4.2216 13 6 8.4910 3.9677 4.0367 14 6 8.8436 4.9276 5.0079 15 1 9.5939 4.6954 5.7492 16 6 8.2216 6.1805 5.0109 17 7 7.5587 6.5848 3.9571 18 14 8.3370 7.2768 6.5190 19 1 9.7625 7.5833 6.8002 20 1 7.5983 8.5408 6.2698 21 1 7.7414 6.5778 7.6860 22 6 7.2148 3.9926 3.4459 23 6 2.7530 1.6533 1.3028 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.3137 2.0789 -0.3238 28 1 3.3381 1.8459 -1.6854 29 1 3.9094 0.4217 -0.7126 30 1 3.6222 3.3708 0.2117 31 1 5.9378 2.1464 0.0544 32 1 5.3231 1.0747 1.3359 33 1 4.9696 3.7506 2.1676 34 1 7.5353 1.3430 1.3679 35 1 9.7648 1.2729 2.3915 36 1 11.3170 2.2503 3.9538 37 1 10.9322 3.5911 4.8902 38 1 7.1271 7.4535 3.9594 39 1 6.4989 4.7482 3.7340 40 1 3.1164 0.7801 1.8447 41 1 2.2138 2.3540 1.9403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705934176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:11 Heat of formation + Delta-G solvation = -4.943240 kcal Electronic energy + Delta-G solvation = -20708.983092 eV Core-core repulsion = 17588.869057 eV Total energy + Delta-G solvation = -3120.114035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.63139 -37.85720 -36.55211 -34.73145 -33.41522 -31.63959 -29.37765 -28.18451 -26.79911 -25.78739 -25.17648 -24.55337 -22.24763 -20.93327 -19.69367 -19.46022 -17.02666 -16.94156 -16.01763 -15.63232 -15.43120 -15.29216 -14.91609 -14.79764 -14.54767 -13.97648 -13.43727 -12.91340 -12.45236 -12.41421 -12.32137 -12.13760 -11.89907 -11.67505 -11.51182 -11.26489 -11.11190 -11.00701 -10.91901 -10.63539 -10.38343 -10.35496 -9.80890 -9.64725 -9.55654 -9.28330 -9.01831 -7.70895 -7.18112 -6.58191 -5.48861 -4.03332 2.95045 3.13935 3.17117 3.34481 3.52308 3.65314 4.05681 4.30593 4.54758 4.66839 4.74602 4.84109 4.95188 5.07988 5.18074 5.26725 5.43187 5.46252 5.55358 5.71294 5.75751 5.88170 5.91966 6.00961 6.11919 6.27947 6.40938 6.45962 6.68054 7.10038 7.16036 7.19514 7.35272 7.53152 7.74544 7.92452 8.04068 8.16216 8.49599 8.79838 8.94463 8.98340 9.03943 9.29580 9.38091 10.40926 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021761 B = 0.003646 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.370562 B = 7677.362772 C = 8621.046317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.058 3.942 4 C -0.126 4.126 5 C -0.119 4.119 6 C 0.153 3.847 7 N -0.762 5.762 8 C 0.177 3.823 9 C -0.255 4.255 10 C -0.153 4.153 11 C 0.084 3.916 12 N -0.889 5.889 13 C 0.095 3.905 14 C -0.465 4.465 15 H 0.070 0.930 16 C 0.077 3.923 17 N -0.801 5.801 18 Si 0.902 3.098 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.267 1.267 22 C -0.200 4.200 23 C -0.146 4.146 24 H 0.083 0.917 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.387 0.613 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.374 0.626 37 H 0.388 0.612 38 H 0.275 0.725 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.291 -6.486 -6.260 13.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.000 4.000 4 C -0.164 4.164 5 C -0.138 4.138 6 C 0.028 3.972 7 N -0.397 5.397 8 C 0.078 3.922 9 C -0.278 4.278 10 C -0.177 4.177 11 C -0.017 4.017 12 N -0.432 5.432 13 C 0.090 3.910 14 C -0.496 4.496 15 H 0.088 0.912 16 C -0.139 4.139 17 N -0.428 5.428 18 Si 0.727 3.273 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.192 1.192 22 C -0.225 4.225 23 C -0.184 4.184 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.220 0.780 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.199 0.801 37 H 0.216 0.784 38 H 0.085 0.915 39 H 0.134 0.866 40 H 0.110 0.890 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.373 -6.585 -6.502 13.901 hybrid contribution -0.101 1.095 0.813 1.368 sum -10.473 -5.490 -5.688 13.122 Atomic orbital electron populations 1.22762 0.81572 1.02533 0.99785 1.87955 1.19331 1.27771 1.94621 1.23824 0.93828 0.84808 0.97503 1.23196 0.95036 1.00441 0.97775 1.22521 0.95284 0.99310 0.96670 1.20913 0.92417 0.92517 0.91389 1.44297 1.14267 1.34899 1.46240 1.17515 0.84317 0.95689 0.94632 1.19616 0.95452 1.03909 1.08869 1.19709 0.96623 1.00103 1.01290 1.17863 0.86410 0.99349 0.98032 1.41804 1.13864 1.37494 1.50022 1.16965 0.89848 0.91046 0.93158 1.19085 1.20567 0.97191 1.12791 0.91191 1.25734 0.93836 0.98261 0.96064 1.69874 1.26842 1.19156 1.26932 0.86495 0.79080 0.79000 0.82740 1.19394 1.20651 1.19190 1.20473 0.97492 1.01440 1.03063 1.23582 0.97160 1.01024 0.96651 0.89888 0.94102 0.94233 0.89753 0.90979 0.88889 0.88757 0.93512 0.93407 0.78038 0.89738 0.89811 0.80136 0.78366 0.91468 0.86556 0.88984 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.85 101.05 1.10 1.35 16 2 O -0.38 -4.44 10.72 -35.23 -0.38 -4.81 16 3 C 0.06 0.62 4.31 -25.83 -0.11 0.51 16 4 C -0.13 -1.38 7.47 -25.92 -0.19 -1.57 16 5 C -0.12 -1.47 3.75 -89.81 -0.34 -1.81 16 6 C 0.15 2.43 4.73 -4.04 -0.02 2.41 16 7 N -0.76 -14.78 5.74 -58.64 -0.34 -15.11 16 8 C 0.18 4.20 6.64 -83.78 -0.56 3.64 16 9 C -0.25 -5.92 9.31 -39.14 -0.36 -6.29 16 10 C -0.15 -3.59 9.86 -39.46 -0.39 -3.98 16 11 C 0.08 2.08 6.79 -83.22 -0.56 1.52 16 12 N -0.89 -18.57 8.98 32.75 0.29 -18.28 16 13 C 0.10 2.56 5.57 -106.66 -0.59 1.97 16 14 C -0.47 -12.35 8.48 -37.91 -0.32 -12.68 16 15 H 0.07 1.77 6.71 -52.49 -0.35 1.41 16 16 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 17 N -0.80 -21.13 10.97 55.54 0.61 -20.52 16 18 Si 0.90 19.10 29.59 -169.99 -5.03 14.07 16 19 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 22 C -0.20 -5.27 8.49 -38.76 -0.33 -5.60 16 23 C -0.15 -1.75 7.48 -25.83 -0.19 -1.94 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.05 0.77 7.93 -51.93 -0.41 0.36 16 32 H 0.05 0.79 7.68 -51.93 -0.40 0.39 16 33 H 0.39 7.15 8.48 -40.82 -0.35 6.80 16 34 H 0.08 1.79 6.69 -52.49 -0.35 1.44 16 35 H 0.08 1.76 8.06 -52.48 -0.42 1.33 16 36 H 0.37 6.62 8.83 -40.82 -0.36 6.26 16 37 H 0.39 7.95 7.06 -40.82 -0.29 7.66 16 38 H 0.27 6.68 8.30 -40.82 -0.34 6.35 16 39 H 0.12 3.17 6.22 -52.49 -0.33 2.84 16 40 H 0.09 1.22 7.92 -51.93 -0.41 0.81 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -29.31 334.90 -8.93 -38.24 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: -6.17 Total: 21.96 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -2.97 Total: -20.60 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.57 Total: -53.91 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.38 Total: -4.81 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.31 -8.93 -38.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705934176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.298 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds