Wall clock time and date at job start Thu Apr 9 2020 14:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99872 * 2 1 4 4 C 1.53782 * 113.61329 * 210.00032 * 3 2 1 5 5 C 1.53781 * 87.08074 * 219.93650 * 4 3 2 6 6 C 1.52995 * 113.61147 * 139.98304 * 5 4 3 7 7 N 1.46506 * 109.47246 * 176.53024 * 6 5 4 8 8 C 1.39846 * 120.00548 * 180.02562 * 7 6 5 9 9 C 1.39607 * 119.83516 * 0.28722 * 8 7 6 10 10 C 1.38056 * 120.54483 * 180.26154 * 9 8 7 11 11 C 1.38740 * 120.22498 * 359.44980 * 10 9 8 12 12 N 1.38860 * 120.16669 * 180.25429 * 11 10 9 13 13 C 1.41568 * 119.66705 * 0.27272 * 11 10 9 14 14 C 1.41025 * 120.26465 * 180.02562 * 13 11 10 15 15 H 1.08000 * 120.00049 * 333.62874 * 14 13 11 16 16 C 1.39884 * 119.99907 * 153.62145 * 14 13 11 17 17 N 1.30895 * 120.00173 * 343.97837 * 16 14 13 18 18 Si 1.86803 * 119.99694 * 163.97393 * 16 14 13 19 19 H 1.48495 * 109.47046 * 60.00596 * 18 16 14 20 20 H 1.48502 * 109.46681 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47380 * 300.00153 * 18 16 14 22 22 C 1.37996 * 119.84411 * 179.97438 * 8 7 6 23 23 C 1.53778 * 87.17139 * 25.38955 * 5 4 3 24 24 H 1.08994 * 109.47163 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46829 * 299.99902 * 1 2 3 26 26 H 1.09003 * 109.47026 * 59.99402 * 1 2 3 27 27 H 1.09000 * 112.84941 * 341.19334 * 3 2 1 28 28 H 1.09001 * 113.61247 * 105.38892 * 4 3 2 29 29 H 1.08995 * 113.61619 * 334.48951 * 4 3 2 30 30 H 1.08998 * 113.61508 * 270.79956 * 5 4 3 31 31 H 1.09001 * 109.47487 * 56.52733 * 6 5 4 32 32 H 1.09002 * 109.47363 * 296.52489 * 6 5 4 33 33 H 0.97007 * 119.99546 * 359.97438 * 7 6 5 34 34 H 1.07998 * 119.73143 * 0.02562 * 9 8 7 35 35 H 1.08004 * 119.88860 * 179.72377 * 10 9 8 36 36 H 0.97002 * 120.00307 * 359.97438 * 12 11 10 37 37 H 0.96999 * 120.00104 * 179.97438 * 12 11 10 38 38 H 0.97004 * 120.00145 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.11315 * 359.97438 * 22 8 7 40 40 H 1.09005 * 113.61182 * 89.15980 * 23 5 4 41 41 H 1.09002 * 113.61416 * 220.05538 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3756 1.3719 -0.7045 5 6 3.8220 2.3199 0.4210 6 6 5.2537 2.0713 0.8998 7 7 5.6120 3.0716 1.9084 8 6 6.8806 3.0484 2.4966 9 6 7.8050 2.0740 2.1158 10 6 9.0595 2.0341 2.6908 11 6 9.4192 2.9720 3.6478 12 7 10.6831 2.9340 4.2216 13 6 8.4910 3.9677 4.0367 14 6 8.8436 4.9276 5.0079 15 1 9.5939 4.6954 5.7492 16 6 8.2216 6.1805 5.0109 17 7 7.5587 6.5848 3.9571 18 14 8.3370 7.2768 6.5190 19 1 9.7625 7.5833 6.8002 20 1 7.5983 8.5408 6.2698 21 1 7.7414 6.5778 7.6860 22 6 7.2148 3.9926 3.4459 23 6 2.7530 1.6533 1.3028 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.3137 2.0789 -0.3238 28 1 3.3381 1.8459 -1.6854 29 1 3.9094 0.4217 -0.7126 30 1 3.6222 3.3708 0.2117 31 1 5.9378 2.1464 0.0544 32 1 5.3231 1.0747 1.3359 33 1 4.9696 3.7506 2.1676 34 1 7.5353 1.3430 1.3679 35 1 9.7648 1.2729 2.3915 36 1 11.3170 2.2503 3.9538 37 1 10.9322 3.5911 4.8902 38 1 7.1271 7.4535 3.9594 39 1 6.4989 4.7482 3.7340 40 1 3.1164 0.7801 1.8447 41 1 2.2138 2.3540 1.9403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705934176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:11 Heat of formation + Delta-G solvation = -23.556095 kcal Electronic energy + Delta-G solvation = -20709.790206 eV Core-core repulsion = 17588.869057 eV Total energy + Delta-G solvation = -3120.921148 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.59254 -39.61325 -37.61032 -36.23679 -35.30646 -33.27013 -31.29211 -29.60151 -27.73170 -26.89181 -26.69698 -26.12608 -23.57540 -22.56724 -21.42664 -20.52957 -18.88441 -18.07435 -17.43286 -17.21667 -16.77258 -16.50231 -16.23994 -16.05196 -15.98622 -15.29371 -14.62407 -14.58092 -14.16997 -13.74244 -13.61264 -13.39194 -13.36055 -13.12169 -12.98823 -12.75931 -12.67521 -12.37729 -12.08933 -11.96094 -11.76672 -11.63915 -11.37963 -11.18125 -11.09662 -10.91380 -10.38711 -9.38689 -9.12429 -8.48407 -7.28083 -5.99263 1.14227 1.41815 1.50828 1.53812 1.67253 2.28306 2.82614 2.93463 3.02398 3.61713 3.70013 3.78254 3.88952 3.91469 3.98653 4.23499 4.45122 4.53539 4.58221 4.61970 4.77317 4.82601 4.85083 4.86333 4.88459 4.91401 5.06319 5.22265 5.25003 5.35308 5.40931 5.46749 5.68863 5.90492 6.07596 6.18194 6.29608 6.34615 6.58233 6.98820 7.07421 7.14638 7.29810 7.49045 7.67876 8.52537 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021761 B = 0.003646 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.370562 B = 7677.362772 C = 8621.046317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.065 3.935 4 C -0.121 4.121 5 C -0.114 4.114 6 C 0.154 3.846 7 N -0.757 5.757 8 C 0.173 3.827 9 C -0.260 4.260 10 C -0.158 4.158 11 C 0.069 3.931 12 N -0.879 5.879 13 C 0.060 3.940 14 C -0.493 4.493 15 H 0.074 0.926 16 C 0.034 3.966 17 N -0.833 5.833 18 Si 0.975 3.025 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.266 1.266 22 C -0.225 4.225 23 C -0.150 4.150 24 H 0.093 0.907 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.390 0.610 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.390 0.610 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.953 -6.722 -6.789 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.008 3.992 4 C -0.159 4.159 5 C -0.133 4.133 6 C 0.029 3.971 7 N -0.391 5.391 8 C 0.072 3.928 9 C -0.284 4.284 10 C -0.183 4.183 11 C -0.033 4.033 12 N -0.423 5.423 13 C 0.055 3.945 14 C -0.525 4.525 15 H 0.092 0.908 16 C -0.179 4.179 17 N -0.460 5.460 18 Si 0.797 3.203 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.191 1.191 22 C -0.250 4.250 23 C -0.188 4.188 24 H 0.112 0.888 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.124 0.876 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.120 0.880 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.223 0.777 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.218 0.782 37 H 0.218 0.782 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.036 -6.849 -7.051 14.779 hybrid contribution 0.073 1.066 0.909 1.403 sum -10.964 -5.783 -6.142 13.834 Atomic orbital electron populations 1.22962 0.79897 1.03675 1.00744 1.87920 1.21282 1.28258 1.94663 1.23804 0.94093 0.85199 0.96148 1.23162 0.94989 0.99687 0.98073 1.22455 0.92937 1.00211 0.97659 1.21043 0.94681 0.91198 0.90179 1.44388 1.12875 1.35540 1.46339 1.17635 0.86021 0.95041 0.94073 1.19921 0.95405 1.03997 1.09068 1.20055 0.97254 1.00286 1.00687 1.18037 0.87435 0.99262 0.98597 1.41676 1.13023 1.37968 1.49652 1.17374 0.90760 0.92284 0.94077 1.19351 1.21664 0.98027 1.13412 0.90838 1.26560 0.93172 0.99404 0.98785 1.69958 1.27578 1.19788 1.28719 0.85374 0.79350 0.77020 0.78571 1.18551 1.19905 1.19079 1.20447 0.97502 1.02227 1.04796 1.23565 0.97411 1.00431 0.97349 0.88804 0.93626 0.92740 0.87632 0.89186 0.89589 0.87950 0.93775 0.93971 0.77735 0.87724 0.87180 0.78221 0.78210 0.91059 0.88458 0.90674 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.85 113.37 1.23 1.57 16 2 O -0.40 -8.74 10.72 -148.98 -1.60 -10.34 16 3 C 0.07 1.27 4.31 31.18 0.13 1.40 16 4 C -0.12 -2.41 7.47 31.12 0.23 -2.18 16 5 C -0.11 -2.67 3.75 -10.27 -0.04 -2.70 16 6 C 0.15 4.76 4.73 86.38 0.41 5.17 16 7 N -0.76 -29.46 5.74 -339.43 -1.95 -31.41 16 8 C 0.17 8.29 6.64 38.14 0.25 8.54 16 9 C -0.26 -11.95 9.31 22.56 0.21 -11.74 16 10 C -0.16 -7.31 9.86 22.35 0.22 -7.08 16 11 C 0.07 3.40 6.79 38.97 0.26 3.66 16 12 N -0.88 -36.22 8.98 -50.31 -0.45 -36.68 16 13 C 0.06 3.32 5.57 -21.18 -0.12 3.20 16 14 C -0.49 -26.74 8.48 23.35 0.20 -26.54 16 15 H 0.07 3.77 6.71 -2.91 -0.02 3.75 16 16 C 0.03 1.73 5.16 85.23 0.44 2.17 16 17 N -0.83 -44.93 10.97 21.82 0.24 -44.69 16 18 Si 0.97 39.47 29.59 68.60 2.03 41.50 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 22 C -0.22 -12.20 8.49 22.80 0.19 -12.01 16 23 C -0.15 -3.42 7.48 31.18 0.23 -3.19 16 24 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.11 1.61 7.87 -2.39 -0.02 1.59 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.84 8.10 -2.39 -0.02 1.82 16 30 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.04 1.41 7.93 -2.39 -0.02 1.39 16 32 H 0.04 1.37 7.68 -2.39 -0.02 1.35 16 33 H 0.39 14.56 8.48 -92.70 -0.79 13.78 16 34 H 0.10 4.30 6.69 -2.91 -0.02 4.28 16 35 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 36 H 0.39 13.28 8.83 -92.71 -0.82 12.46 16 37 H 0.39 15.86 7.06 -92.71 -0.65 15.21 16 38 H 0.28 13.83 8.30 -92.71 -0.77 13.06 16 39 H 0.10 5.54 6.22 -2.91 -0.02 5.52 16 40 H 0.07 1.97 7.92 -2.38 -0.02 1.95 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -63.53 334.90 0.94 -62.59 By element: Atomic # 1 Polarization: 59.95 SS G_CDS: -1.20 Total: 58.75 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 3.86 Total: -39.73 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -2.16 Total: -112.77 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -1.60 Total: -10.34 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -63.53 0.94 -62.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705934176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.033 kcal (2) G-P(sol) polarization free energy of solvation -63.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds