Wall clock time and date at job start Thu Apr 9 2020 14:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.50703 * 109.47333 * 239.99727 * 2 1 3 5 5 H 1.07997 * 119.99578 * 239.99814 * 4 2 1 6 6 C 1.37871 * 119.99597 * 60.00018 * 4 2 1 7 7 N 1.31509 * 120.00340 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99557 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47091 * 89.99804 * 8 6 4 10 10 H 1.48497 * 109.47184 * 209.99656 * 8 6 4 11 11 H 1.48500 * 109.46974 * 330.00091 * 8 6 4 12 12 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 13 13 C 1.50698 * 109.47184 * 295.00598 * 12 2 1 14 14 N 1.31124 * 126.55488 * 89.99508 * 13 12 2 15 15 C 1.34496 * 105.61699 * 180.02562 * 14 13 12 16 16 C 1.50705 * 126.28972 * 180.02562 * 15 14 13 17 17 H 1.09001 * 110.04675 * 0.69789 * 16 15 14 18 18 C 1.54377 * 110.06975 * 122.18368 * 16 15 14 19 19 C 1.55016 * 104.17877 * 142.76054 * 18 16 15 20 20 C 1.54981 * 102.85484 * 322.33816 * 19 18 16 21 21 C 1.53482 * 110.07041 * 239.21170 * 16 15 14 22 22 C 1.52577 * 121.05139 * 96.54123 * 21 16 15 23 23 C 1.52554 * 121.08295 * 24.83202 * 21 16 15 24 24 N 1.29942 * 107.42284 * 0.02562 * 15 14 13 25 25 O 1.21302 * 110.25186 * 359.70365 * 24 15 14 26 26 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 27 27 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 29 29 H 0.97002 * 119.99874 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47002 * 55.00002 * 12 2 1 31 31 H 1.08993 * 109.46955 * 175.00440 * 12 2 1 32 32 H 1.09000 * 110.48505 * 261.48156 * 18 16 15 33 33 H 1.08998 * 110.48558 * 24.11599 * 18 16 15 34 34 H 1.08999 * 110.75536 * 203.97860 * 19 18 16 35 35 H 1.09003 * 110.85534 * 80.74326 * 19 18 16 36 36 H 1.09003 * 110.51123 * 278.89594 * 20 19 18 37 37 H 1.09000 * 110.63156 * 156.24031 * 20 19 18 38 38 H 1.08993 * 117.51040 * 356.97433 * 22 21 16 39 39 H 1.08995 * 117.50791 * 142.06513 * 22 21 16 40 40 H 1.09003 * 117.50513 * 217.89011 * 23 21 16 41 41 H 1.09001 * 117.51171 * 2.92751 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.3450 -2.1618 -4.4122 10 1 2.4873 -0.1404 -5.1120 11 1 3.6310 -1.7567 -3.7117 12 6 2.0400 -0.7212 1.2493 13 6 1.6412 0.0571 2.4766 14 7 0.5345 -0.0842 3.1656 15 6 0.6126 0.8135 4.1641 16 6 -0.4197 1.0460 5.2373 17 1 -1.2587 0.3632 5.1029 18 6 0.2108 0.8426 6.6317 19 6 -0.4595 1.9273 7.5133 20 6 -0.5699 3.1356 6.5490 21 6 -0.9105 2.4994 5.1900 22 6 -2.1923 2.8736 4.4518 23 6 -0.8330 3.3155 3.9034 24 7 1.7415 1.4436 4.0335 25 8 2.3500 1.0203 3.0733 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8900 29 1 0.7081 1.1606 -3.4844 30 1 1.6054 -1.7197 1.2953 31 1 3.1262 -0.7993 1.2057 32 1 -0.0169 -0.1533 7.0117 33 1 1.2888 0.9985 6.5893 34 1 0.1696 2.1725 8.3690 35 1 -1.4472 1.6042 7.8421 36 1 0.3795 3.6684 6.4940 37 1 -1.3666 3.8085 6.8661 38 1 -2.7163 2.0802 3.9189 39 1 -2.8268 3.6379 4.9004 40 1 -0.5734 4.3705 3.9913 41 1 -0.4624 2.8129 3.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706249281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:14 Heat of formation + Delta-G solvation = 68.510766 kcal Electronic energy + Delta-G solvation = -21685.855478 eV Core-core repulsion = 18568.926648 eV Total energy + Delta-G solvation = -3116.928830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.03754 -39.45642 -35.79577 -34.96419 -34.19208 -32.53612 -30.70891 -29.00456 -26.58251 -25.92428 -25.18071 -23.24591 -22.37353 -22.15339 -20.77170 -19.84767 -18.36892 -17.53110 -16.89698 -16.33064 -15.66008 -15.39433 -14.72880 -14.65375 -14.15089 -13.60047 -13.18040 -13.08101 -12.76280 -12.64948 -12.17191 -11.85726 -11.58566 -11.48339 -11.31120 -11.25913 -11.19062 -10.99010 -10.81967 -10.67244 -10.64757 -10.45138 -10.25990 -10.17023 -9.92511 -9.88088 -9.74350 -9.05814 -8.93232 -8.40654 -6.05374 -4.13920 1.70662 2.72466 3.28334 3.35206 3.37146 3.44822 3.58769 4.11678 4.21644 4.39545 4.49640 4.68498 4.79044 4.85727 5.04479 5.09897 5.26122 5.29929 5.44482 5.58288 5.65510 5.68439 5.76557 5.78680 5.84238 5.94958 5.98727 6.02704 6.10879 6.15475 6.18725 6.22975 6.28616 6.52870 6.58193 6.92106 7.13818 7.25703 7.63876 7.84798 8.05856 8.30433 8.71370 8.88504 9.51701 11.00671 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.034264 B = 0.004019 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.994941 B = 6966.098085 C = 7397.435418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.050 3.950 3 H 0.031 0.969 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 C -0.027 4.027 13 C 0.213 3.787 14 N -0.493 5.493 15 C 0.173 3.827 16 C 0.035 3.965 17 H 0.100 0.900 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.124 4.124 22 C -0.163 4.163 23 C -0.160 4.160 24 N -0.391 5.391 25 O 0.064 5.936 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.010 0.990 29 H 0.261 0.739 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.355 2.306 16.810 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.031 3.969 3 H 0.049 0.951 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.066 4.066 13 C -0.006 4.006 14 N -0.227 5.227 15 C -0.100 4.100 16 C 0.015 3.985 17 H 0.119 0.881 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.200 4.200 23 C -0.197 4.197 24 N -0.101 5.101 25 O 0.008 5.992 26 H 0.100 0.900 27 H 0.048 0.952 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.553 2.870 17.305 17.898 hybrid contribution 0.320 -0.479 -1.205 1.336 sum -3.233 2.391 16.100 16.595 Atomic orbital electron populations 1.21812 0.97885 0.99448 1.00227 1.18720 0.93448 0.95895 0.88842 0.95106 1.21031 1.31827 1.12711 0.90022 0.92150 1.24944 0.94894 0.94895 0.99071 1.69897 1.36297 1.22744 1.23538 0.86546 0.79281 0.79357 0.82533 1.20638 1.21233 1.19774 1.20815 1.02214 0.97427 0.86120 1.29502 0.85840 0.88706 0.96533 1.71967 1.21001 1.23468 1.06266 1.25499 0.94705 0.92233 0.97547 1.19577 0.93404 0.95650 0.89819 0.88150 1.22443 1.00584 0.99438 0.92692 1.22453 1.00732 0.95055 0.97369 1.21859 1.01525 0.97066 0.91815 1.21640 1.02455 0.94260 0.94139 1.23033 0.90424 1.03393 1.03110 1.22878 1.00182 1.00052 0.96590 1.74502 1.09186 1.21375 1.05084 1.85282 1.41951 1.41661 1.30272 0.89955 0.95217 0.97142 0.92864 0.88447 0.89265 0.90911 0.90858 0.91202 0.91113 0.90996 0.91422 0.88528 0.88587 0.88661 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.78 37.15 0.33 -2.97 16 2 C 0.05 1.21 2.29 -91.77 -0.21 1.00 16 3 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.52 -13.47 8.56 -34.44 -0.29 -13.76 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.87 11.32 55.43 0.63 -24.25 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 C -0.03 -0.52 5.26 -27.88 -0.15 -0.67 16 13 C 0.21 4.12 6.97 -13.06 -0.09 4.03 16 14 N -0.49 -9.48 10.88 -9.87 -0.11 -9.59 16 15 C 0.17 2.99 5.31 -156.37 -0.83 2.16 16 16 C 0.04 0.49 3.30 -90.80 -0.30 0.19 16 17 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 18 C -0.11 -1.28 6.37 -24.94 -0.16 -1.44 16 19 C -0.12 -1.08 6.91 -24.62 -0.17 -1.25 16 20 C -0.09 -0.88 6.58 -25.23 -0.17 -1.04 16 21 C -0.12 -1.56 2.26 -154.25 -0.35 -1.91 16 22 C -0.16 -1.94 10.24 -26.90 -0.28 -2.21 16 23 C -0.16 -2.27 9.59 -26.91 -0.26 -2.53 16 24 N -0.39 -7.15 11.90 30.90 0.37 -6.78 16 25 O 0.06 1.23 11.31 18.10 0.20 1.43 16 26 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.01 0.23 6.85 -51.93 -0.36 -0.13 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 31 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.93 7.68 -51.93 -0.40 0.53 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.60 8.11 -51.93 -0.42 0.17 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.09 1.59 7.30 -51.93 -0.38 1.21 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -28.29 333.74 -8.40 -36.69 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.48 Total: 0.66 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -3.02 Total: -18.77 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.89 Total: -40.61 kcal Atomic # 8 Polarization: 1.23 SS G_CDS: 0.20 Total: 1.43 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.29 -8.40 -36.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706249281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.202 kcal (2) G-P(sol) polarization free energy of solvation -28.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds