Wall clock time and date at job start Thu Apr 9 2020 14:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46945 * 2 1 4 4 C 1.50703 * 109.47333 * 239.99727 * 2 1 3 5 5 H 1.07997 * 119.99578 * 239.99814 * 4 2 1 6 6 C 1.37871 * 119.99597 * 60.00018 * 4 2 1 7 7 N 1.31509 * 120.00340 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99557 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47091 * 89.99804 * 8 6 4 10 10 H 1.48497 * 109.47184 * 209.99656 * 8 6 4 11 11 H 1.48500 * 109.46974 * 330.00091 * 8 6 4 12 12 C 1.53006 * 109.47234 * 119.99498 * 2 1 3 13 13 C 1.50698 * 109.47184 * 295.00598 * 12 2 1 14 14 N 1.31124 * 126.55488 * 89.99508 * 13 12 2 15 15 C 1.34496 * 105.61699 * 180.02562 * 14 13 12 16 16 C 1.50705 * 126.28972 * 180.02562 * 15 14 13 17 17 H 1.09001 * 110.04675 * 0.69789 * 16 15 14 18 18 C 1.54377 * 110.06975 * 122.18368 * 16 15 14 19 19 C 1.55016 * 104.17877 * 142.76054 * 18 16 15 20 20 C 1.54981 * 102.85484 * 322.33816 * 19 18 16 21 21 C 1.53482 * 110.07041 * 239.21170 * 16 15 14 22 22 C 1.52577 * 121.05139 * 96.54123 * 21 16 15 23 23 C 1.52554 * 121.08295 * 24.83202 * 21 16 15 24 24 N 1.29942 * 107.42284 * 0.02562 * 15 14 13 25 25 O 1.21302 * 110.25186 * 359.70365 * 24 15 14 26 26 H 1.09002 * 109.47112 * 60.00472 * 1 2 3 27 27 H 1.09006 * 109.47389 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47743 * 299.99957 * 1 2 3 29 29 H 0.97002 * 119.99874 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47002 * 55.00002 * 12 2 1 31 31 H 1.08993 * 109.46955 * 175.00440 * 12 2 1 32 32 H 1.09000 * 110.48505 * 261.48156 * 18 16 15 33 33 H 1.08998 * 110.48558 * 24.11599 * 18 16 15 34 34 H 1.08999 * 110.75536 * 203.97860 * 19 18 16 35 35 H 1.09003 * 110.85534 * 80.74326 * 19 18 16 36 36 H 1.09003 * 110.51123 * 278.89594 * 20 19 18 37 37 H 1.09000 * 110.63156 * 156.24031 * 20 19 18 38 38 H 1.08993 * 117.51040 * 356.97433 * 22 21 16 39 39 H 1.08995 * 117.50791 * 142.06513 * 22 21 16 40 40 H 1.09003 * 117.50513 * 217.89011 * 23 21 16 41 41 H 1.09001 * 117.51171 * 2.92751 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.3450 -2.1618 -4.4122 10 1 2.4873 -0.1404 -5.1120 11 1 3.6310 -1.7567 -3.7117 12 6 2.0400 -0.7212 1.2493 13 6 1.6412 0.0571 2.4766 14 7 0.5345 -0.0842 3.1656 15 6 0.6126 0.8135 4.1641 16 6 -0.4197 1.0460 5.2373 17 1 -1.2587 0.3632 5.1029 18 6 0.2108 0.8426 6.6317 19 6 -0.4595 1.9273 7.5133 20 6 -0.5699 3.1356 6.5490 21 6 -0.9105 2.4994 5.1900 22 6 -2.1923 2.8736 4.4518 23 6 -0.8330 3.3155 3.9034 24 7 1.7415 1.4436 4.0335 25 8 2.3500 1.0203 3.0733 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8900 29 1 0.7081 1.1606 -3.4844 30 1 1.6054 -1.7197 1.2953 31 1 3.1262 -0.7993 1.2057 32 1 -0.0169 -0.1533 7.0117 33 1 1.2888 0.9985 6.5893 34 1 0.1696 2.1725 8.3690 35 1 -1.4472 1.6042 7.8421 36 1 0.3795 3.6684 6.4940 37 1 -1.3666 3.8085 6.8661 38 1 -2.7163 2.0802 3.9189 39 1 -2.8268 3.6379 4.9004 40 1 -0.5734 4.3705 3.9913 41 1 -0.4624 2.8129 3.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706249281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:13 Heat of formation + Delta-G solvation = 53.283539 kcal Electronic energy + Delta-G solvation = -21686.515780 eV Core-core repulsion = 18568.926648 eV Total energy + Delta-G solvation = -3117.589132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.50456 -40.44807 -37.53176 -36.47719 -35.20394 -34.25332 -32.43145 -30.07988 -28.32098 -27.23900 -26.85078 -24.65990 -23.59168 -23.42501 -21.91489 -21.37839 -19.54103 -19.05048 -18.39816 -18.19471 -16.65204 -16.58445 -16.42582 -15.87250 -15.74079 -14.92182 -14.58905 -14.49677 -14.08074 -13.89694 -13.55923 -13.41220 -13.01934 -12.91779 -12.82722 -12.57826 -12.49902 -12.36047 -12.18404 -12.08130 -11.97651 -11.94468 -11.74435 -11.58873 -11.56440 -11.24841 -10.94853 -10.79955 -10.58549 -10.45568 -8.09710 -6.24961 0.20286 1.28784 1.47045 1.47921 1.57915 1.93331 2.43006 2.47984 2.95457 3.04644 3.20193 3.47240 3.58394 3.80068 3.84914 4.09536 4.16735 4.25912 4.38403 4.45027 4.49550 4.62374 4.64394 4.69933 4.75454 4.81705 4.85997 4.91043 5.00267 5.00817 5.04379 5.08885 5.12532 5.13720 5.15447 5.25301 5.32077 5.41120 5.59147 5.82179 6.02348 6.27154 6.85785 7.22694 7.44634 8.96164 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.034264 B = 0.004019 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.994941 B = 6966.098085 C = 7397.435418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 H -0.003 1.003 4 C -0.529 4.529 5 H 0.072 0.928 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.261 1.261 12 C -0.015 4.015 13 C 0.207 3.793 14 N -0.508 5.508 15 C 0.180 3.820 16 C 0.026 3.974 17 H 0.104 0.896 18 C -0.110 4.110 19 C -0.108 4.108 20 C -0.083 4.083 21 C -0.121 4.121 22 C -0.145 4.145 23 C -0.185 4.185 24 N -0.400 5.400 25 O 0.051 5.949 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.012 0.988 29 H 0.260 0.740 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 1.621 18.585 19.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.030 3.970 3 H 0.016 0.984 4 C -0.567 4.567 5 H 0.090 0.910 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.185 1.185 12 C -0.054 4.054 13 C -0.012 4.012 14 N -0.242 5.242 15 C -0.093 4.093 16 C 0.006 3.994 17 H 0.122 0.878 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.181 4.181 23 C -0.222 4.222 24 N -0.112 5.112 25 O -0.001 6.001 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.031 0.969 29 H 0.069 0.931 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.143 0.857 40 H 0.122 0.878 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.934 2.174 19.082 19.604 hybrid contribution 0.413 -0.232 -1.740 1.803 sum -3.521 1.941 17.342 17.802 Atomic orbital electron populations 1.21615 0.98265 0.99125 0.98841 1.18598 0.93085 0.94515 0.90804 0.98442 1.21442 1.31606 1.12955 0.90734 0.90974 1.25785 0.95123 0.95564 1.02244 1.70051 1.37633 1.24303 1.24033 0.85514 0.79156 0.78094 0.78648 1.20213 1.21512 1.18495 1.20603 1.03417 0.97220 0.84186 1.29419 0.86155 0.88866 0.96746 1.71970 1.20920 1.24364 1.06935 1.26167 0.94857 0.90875 0.97399 1.19937 0.92755 0.96631 0.90089 0.87792 1.22458 0.99579 1.01318 0.91538 1.22461 1.01831 0.93273 0.97003 1.21904 1.01840 0.97810 0.90480 1.21791 1.02451 0.93411 0.94524 1.23113 0.89736 1.03429 1.01864 1.22767 1.02908 1.00432 0.96111 1.74488 1.09840 1.21751 1.05149 1.85262 1.42362 1.41767 1.30719 0.92827 0.94793 0.96921 0.93054 0.87153 0.87298 0.89422 0.92515 0.89499 0.89223 0.91921 0.89164 0.89267 0.85685 0.87837 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 8.78 71.98 0.63 -5.37 16 2 C 0.05 2.43 2.29 -11.54 -0.03 2.40 16 3 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 4 C -0.53 -27.54 8.56 25.60 0.22 -27.32 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -52.93 11.32 21.44 0.24 -52.69 16 8 Si 0.96 42.17 29.54 68.60 2.03 44.19 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 12 C -0.02 -0.60 5.26 29.85 0.16 -0.44 16 13 C 0.21 8.12 6.97 88.38 0.62 8.73 16 14 N -0.51 -19.64 10.88 -303.20 -3.30 -22.93 16 15 C 0.18 6.25 5.31 138.46 0.74 6.99 16 16 C 0.03 0.68 3.30 -10.91 -0.04 0.65 16 17 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 18 C -0.11 -2.27 6.37 31.75 0.20 -2.07 16 19 C -0.11 -1.60 6.91 31.96 0.22 -1.38 16 20 C -0.08 -1.48 6.58 31.57 0.21 -1.28 16 21 C -0.12 -2.87 2.26 -52.01 -0.12 -2.99 16 22 C -0.14 -3.23 10.24 30.48 0.31 -2.91 16 23 C -0.18 -5.30 9.59 30.48 0.29 -5.00 16 24 N -0.40 -14.85 11.90 -60.32 -0.72 -15.57 16 25 O 0.05 2.02 11.31 74.83 0.85 2.87 16 26 H 0.05 2.97 6.07 -2.39 -0.01 2.96 16 27 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.01 0.57 6.85 -2.39 -0.02 0.56 16 29 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 31 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 1.36 7.68 -2.39 -0.02 1.34 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 1.23 8.11 -2.39 -0.02 1.21 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 39 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.05 1.78 7.30 -2.39 -0.02 1.76 16 Total: -1.00 -62.11 333.74 3.97 -58.14 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 1.01 Total: 14.91 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 3.86 Total: -28.92 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -3.77 Total: -91.19 kcal Atomic # 8 Polarization: 2.02 SS G_CDS: 0.85 Total: 2.87 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -62.11 3.97 -58.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706249281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.422 kcal (2) G-P(sol) polarization free energy of solvation -62.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds