Wall clock time and date at job start Thu Apr 9 2020 14:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46839 * 2 1 4 4 C 1.50694 * 109.47522 * 239.99357 * 2 1 3 5 5 H 1.07997 * 120.00576 * 245.34809 * 4 2 1 6 6 C 1.37878 * 119.99751 * 65.35326 * 4 2 1 7 7 N 1.31515 * 120.00157 * 5.14579 * 6 4 2 8 8 Si 1.86804 * 120.00293 * 185.14533 * 6 4 2 9 9 H 1.48504 * 109.46688 * 84.99803 * 8 6 4 10 10 H 1.48504 * 109.46573 * 325.00037 * 8 6 4 11 11 H 1.48497 * 109.47179 * 205.00053 * 8 6 4 12 12 C 1.53008 * 109.46993 * 119.99491 * 2 1 3 13 13 C 1.50704 * 109.47106 * 295.00135 * 12 2 1 14 14 N 1.31134 * 126.54689 * 90.00147 * 13 12 2 15 15 C 1.34493 * 105.60766 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.28263 * 179.97438 * 15 14 13 17 17 H 1.09007 * 110.05348 * 359.29986 * 16 15 14 18 18 C 1.54390 * 110.07307 * 237.81652 * 16 15 14 19 19 C 1.54918 * 104.22459 * 217.22073 * 18 16 15 20 20 C 1.54994 * 102.82275 * 37.71582 * 19 18 16 21 21 C 1.53487 * 110.07220 * 120.78611 * 16 15 14 22 22 C 1.52549 * 121.08492 * 335.14409 * 21 16 15 23 23 C 1.52570 * 121.04728 * 263.43279 * 21 16 15 24 24 N 1.29943 * 107.42929 * 359.97438 * 15 14 13 25 25 O 1.21300 * 110.25019 * 359.70542 * 24 15 14 26 26 H 1.09004 * 109.46489 * 175.04496 * 1 2 3 27 27 H 1.08992 * 109.47480 * 295.04446 * 1 2 3 28 28 H 1.08993 * 109.46657 * 55.04982 * 1 2 3 29 29 H 0.96999 * 120.00526 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47064 * 55.00637 * 12 2 1 31 31 H 1.08997 * 109.47277 * 175.00307 * 12 2 1 32 32 H 1.08997 * 110.47430 * 335.90026 * 18 16 15 33 33 H 1.08992 * 110.48553 * 98.39968 * 18 16 15 34 34 H 1.09005 * 110.74612 * 156.04905 * 19 18 16 35 35 H 1.09002 * 110.74322 * 279.20346 * 19 18 16 36 36 H 1.08992 * 110.51422 * 81.07243 * 20 19 18 37 37 H 1.09003 * 110.51294 * 203.65140 * 20 19 18 38 38 H 1.09005 * 117.51155 * 357.03517 * 22 21 16 39 39 H 1.08999 * 117.50935 * 142.11162 * 22 21 16 40 40 H 1.09002 * 117.50563 * 217.93433 * 23 21 16 41 41 H 1.08994 * 117.51714 * 3.02653 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5803 -1.6362 -1.1335 6 6 1.7928 -0.1787 -2.4796 7 7 1.2155 0.9974 -2.5940 8 14 2.2880 -1.1287 -4.0099 9 1 1.2113 -2.0869 -4.3677 10 1 3.5454 -1.8732 -3.7449 11 1 2.5011 -0.1813 -5.1334 12 6 2.0400 -0.7212 1.2494 13 6 1.6413 0.0572 2.4767 14 7 0.5345 -0.0842 3.1656 15 6 0.6131 0.8128 4.1647 16 6 -0.4194 1.0456 5.2375 17 1 -1.2703 0.3809 5.0878 18 6 -0.8860 2.5171 5.2134 19 6 -1.0828 2.8785 6.7069 20 6 0.0876 2.1338 7.3982 21 6 0.1974 0.8079 6.6227 22 6 1.4067 -0.1049 6.8003 23 6 0.0374 -0.5313 7.3360 24 7 1.7428 1.4417 4.0351 25 8 2.3513 1.0184 3.0750 26 1 -0.3632 -1.0239 -0.0888 27 1 -0.3634 0.4350 0.9310 28 1 -0.3632 0.5887 -0.8423 29 1 1.0466 1.3714 -3.4729 30 1 1.6055 -1.7197 1.2953 31 1 3.1263 -0.7994 1.2058 32 1 -0.1220 3.1520 4.7649 33 1 -1.8258 2.6104 4.6693 34 1 -0.9985 3.9547 6.8581 35 1 -2.0439 2.5134 7.0691 36 1 1.0106 2.7065 7.3089 37 1 -0.1448 1.9467 8.4466 38 1 1.7838 -0.6189 5.9161 39 1 2.1611 0.1946 7.5279 40 1 -0.1089 -0.5121 8.4160 41 1 -0.4862 -1.3257 6.8042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706249282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:16 Heat of formation + Delta-G solvation = 67.408933 kcal Electronic energy + Delta-G solvation = -21549.154662 eV Core-core repulsion = 18432.178053 eV Total energy + Delta-G solvation = -3116.976609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.04400 -39.50151 -35.79930 -34.96882 -34.23640 -32.51737 -30.74274 -29.01148 -26.64149 -25.94848 -25.15047 -23.26533 -22.48856 -22.16678 -20.79325 -19.83466 -18.43814 -17.54120 -16.90876 -16.31977 -15.70176 -15.43631 -14.78206 -14.63566 -14.13036 -13.61754 -13.25458 -13.07523 -12.73855 -12.67940 -12.17928 -11.87457 -11.66796 -11.55013 -11.40196 -11.28012 -11.17349 -10.97500 -10.80522 -10.67718 -10.65732 -10.47027 -10.36243 -10.26114 -9.97422 -9.87294 -9.75761 -9.03732 -8.96071 -8.41462 -6.07444 -4.12774 1.70206 2.71616 3.29104 3.35573 3.36973 3.43226 3.52451 4.09065 4.17572 4.40066 4.45884 4.66402 4.72850 4.78616 5.01997 5.07452 5.26769 5.29505 5.44204 5.51209 5.55926 5.67877 5.71972 5.77239 5.83635 5.85896 5.97031 6.01560 6.02141 6.08290 6.17856 6.22767 6.27701 6.51839 6.56445 6.88947 7.09969 7.20706 7.63812 7.82548 7.95177 8.28042 8.70815 8.89933 9.52038 11.01595 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.037934 B = 0.003747 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.944850 B = 7471.241490 C = 7761.608563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.049 3.951 3 H 0.037 0.963 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.287 1.287 12 C -0.026 4.026 13 C 0.213 3.787 14 N -0.494 5.494 15 C 0.173 3.827 16 C 0.036 3.964 17 H 0.101 0.899 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.121 4.121 22 C -0.161 4.161 23 C -0.164 4.164 24 N -0.390 5.390 25 O 0.065 5.935 26 H 0.032 0.968 27 H 0.015 0.985 28 H 0.065 0.935 29 H 0.262 0.738 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 0.515 18.207 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.030 3.970 3 H 0.055 0.945 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.213 1.213 12 C -0.066 4.066 13 C -0.006 4.006 14 N -0.228 5.228 15 C -0.100 4.100 16 C 0.016 3.984 17 H 0.119 0.881 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.198 4.198 23 C -0.201 4.201 24 N -0.101 5.101 25 O 0.009 5.991 26 H 0.051 0.949 27 H 0.034 0.966 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.115 0.885 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.053 1.104 18.698 18.978 hybrid contribution 0.300 -0.574 -1.179 1.346 sum -2.752 0.529 17.519 17.741 Atomic orbital electron populations 1.21777 0.98212 0.99878 0.99162 1.18726 0.93068 0.96361 0.88882 0.94508 1.20995 1.36163 1.08404 0.90178 0.92161 1.24946 0.95006 0.94681 0.99072 1.69947 1.42581 1.16078 1.23845 0.86586 0.78986 0.79741 0.82553 1.20540 1.19826 1.21293 1.20810 1.02299 0.97354 0.86087 1.29509 0.85775 0.88783 0.96505 1.71970 1.21078 1.23430 1.06297 1.25485 0.94813 0.92462 0.97242 1.19579 0.93141 0.98647 0.87075 0.88127 1.22441 1.01826 0.93794 0.97267 1.22442 0.98425 1.00098 0.94653 1.21881 0.98963 0.93392 0.98019 1.21668 1.02964 0.92334 0.95227 1.22845 0.91187 1.02848 1.02952 1.23036 1.00157 0.96879 0.99990 1.74506 1.09026 1.21668 1.04905 1.85283 1.41887 1.41751 1.30165 0.94858 0.96571 0.91560 0.92841 0.88514 0.89179 0.90749 0.90734 0.91119 0.91103 0.90945 0.91454 0.89449 0.88675 0.88565 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.86 37.16 0.33 -2.84 16 2 C 0.05 1.18 2.16 -91.77 -0.20 0.98 16 3 H 0.04 0.98 8.12 -51.93 -0.42 0.56 16 4 C -0.52 -13.51 8.49 -34.44 -0.29 -13.80 16 5 H 0.06 1.50 7.75 -52.49 -0.41 1.10 16 6 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 7 N -0.89 -25.04 11.98 55.43 0.66 -24.38 16 8 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 C -0.03 -0.51 5.26 -27.88 -0.15 -0.66 16 13 C 0.21 4.11 6.97 -13.06 -0.09 4.02 16 14 N -0.49 -9.43 10.73 -9.87 -0.11 -9.54 16 15 C 0.17 2.98 5.31 -156.38 -0.83 2.15 16 16 C 0.04 0.48 3.30 -90.79 -0.30 0.19 16 17 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 18 C -0.11 -1.39 6.36 -24.99 -0.16 -1.55 16 19 C -0.12 -1.11 6.91 -24.67 -0.17 -1.28 16 20 C -0.09 -0.84 6.59 -25.16 -0.17 -1.01 16 21 C -0.12 -1.41 2.26 -154.19 -0.35 -1.76 16 22 C -0.16 -1.95 9.60 -26.92 -0.26 -2.21 16 23 C -0.16 -1.69 10.24 -26.91 -0.28 -1.96 16 24 N -0.39 -7.13 11.90 30.89 0.37 -6.76 16 25 O 0.06 1.25 11.31 18.11 0.20 1.45 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.02 0.35 6.59 -51.93 -0.34 0.01 16 28 H 0.07 1.74 6.83 -51.93 -0.35 1.39 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 31 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 38 H 0.09 1.26 7.30 -51.93 -0.38 0.88 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 334.65 15.07 5.04 5.04 Total: -1.00 -28.43 334.65 -8.36 -36.79 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.51 Total: -0.14 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -3.00 Total: -18.08 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.93 Total: -40.68 kcal Atomic # 8 Polarization: 1.25 SS G_CDS: 0.20 Total: 1.45 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.43 -8.36 -36.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706249282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.200 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds