Wall clock time and date at job start Thu Apr 9 2020 14:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46839 * 2 1 4 4 C 1.50694 * 109.47522 * 239.99357 * 2 1 3 5 5 H 1.07997 * 120.00576 * 245.34809 * 4 2 1 6 6 C 1.37878 * 119.99751 * 65.35326 * 4 2 1 7 7 N 1.31515 * 120.00157 * 5.14579 * 6 4 2 8 8 Si 1.86804 * 120.00293 * 185.14533 * 6 4 2 9 9 H 1.48504 * 109.46688 * 84.99803 * 8 6 4 10 10 H 1.48504 * 109.46573 * 325.00037 * 8 6 4 11 11 H 1.48497 * 109.47179 * 205.00053 * 8 6 4 12 12 C 1.53008 * 109.46993 * 119.99491 * 2 1 3 13 13 C 1.50704 * 109.47106 * 295.00135 * 12 2 1 14 14 N 1.31134 * 126.54689 * 90.00147 * 13 12 2 15 15 C 1.34493 * 105.60766 * 179.97438 * 14 13 12 16 16 C 1.50700 * 126.28263 * 179.97438 * 15 14 13 17 17 H 1.09007 * 110.05348 * 359.29986 * 16 15 14 18 18 C 1.54390 * 110.07307 * 237.81652 * 16 15 14 19 19 C 1.54918 * 104.22459 * 217.22073 * 18 16 15 20 20 C 1.54994 * 102.82275 * 37.71582 * 19 18 16 21 21 C 1.53487 * 110.07220 * 120.78611 * 16 15 14 22 22 C 1.52549 * 121.08492 * 335.14409 * 21 16 15 23 23 C 1.52570 * 121.04728 * 263.43279 * 21 16 15 24 24 N 1.29943 * 107.42929 * 359.97438 * 15 14 13 25 25 O 1.21300 * 110.25019 * 359.70542 * 24 15 14 26 26 H 1.09004 * 109.46489 * 175.04496 * 1 2 3 27 27 H 1.08992 * 109.47480 * 295.04446 * 1 2 3 28 28 H 1.08993 * 109.46657 * 55.04982 * 1 2 3 29 29 H 0.96999 * 120.00526 * 180.02562 * 7 6 4 30 30 H 1.08997 * 109.47064 * 55.00637 * 12 2 1 31 31 H 1.08997 * 109.47277 * 175.00307 * 12 2 1 32 32 H 1.08997 * 110.47430 * 335.90026 * 18 16 15 33 33 H 1.08992 * 110.48553 * 98.39968 * 18 16 15 34 34 H 1.09005 * 110.74612 * 156.04905 * 19 18 16 35 35 H 1.09002 * 110.74322 * 279.20346 * 19 18 16 36 36 H 1.08992 * 110.51422 * 81.07243 * 20 19 18 37 37 H 1.09003 * 110.51294 * 203.65140 * 20 19 18 38 38 H 1.09005 * 117.51155 * 357.03517 * 22 21 16 39 39 H 1.08999 * 117.50935 * 142.11162 * 22 21 16 40 40 H 1.09002 * 117.50563 * 217.93433 * 23 21 16 41 41 H 1.08994 * 117.51714 * 3.02653 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.5803 -1.6362 -1.1335 6 6 1.7928 -0.1787 -2.4796 7 7 1.2155 0.9974 -2.5940 8 14 2.2880 -1.1287 -4.0099 9 1 1.2113 -2.0869 -4.3677 10 1 3.5454 -1.8732 -3.7449 11 1 2.5011 -0.1813 -5.1334 12 6 2.0400 -0.7212 1.2494 13 6 1.6413 0.0572 2.4767 14 7 0.5345 -0.0842 3.1656 15 6 0.6131 0.8128 4.1647 16 6 -0.4194 1.0456 5.2375 17 1 -1.2703 0.3809 5.0878 18 6 -0.8860 2.5171 5.2134 19 6 -1.0828 2.8785 6.7069 20 6 0.0876 2.1338 7.3982 21 6 0.1974 0.8079 6.6227 22 6 1.4067 -0.1049 6.8003 23 6 0.0374 -0.5313 7.3360 24 7 1.7428 1.4417 4.0351 25 8 2.3513 1.0184 3.0750 26 1 -0.3632 -1.0239 -0.0888 27 1 -0.3634 0.4350 0.9310 28 1 -0.3632 0.5887 -0.8423 29 1 1.0466 1.3714 -3.4729 30 1 1.6055 -1.7197 1.2953 31 1 3.1263 -0.7994 1.2058 32 1 -0.1220 3.1520 4.7649 33 1 -1.8258 2.6104 4.6693 34 1 -0.9985 3.9547 6.8581 35 1 -2.0439 2.5134 7.0691 36 1 1.0106 2.7065 7.3089 37 1 -0.1448 1.9467 8.4466 38 1 1.7838 -0.6189 5.9161 39 1 2.1611 0.1946 7.5279 40 1 -0.1089 -0.5121 8.4160 41 1 -0.4862 -1.3257 6.8042 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706249282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:15 Heat of formation + Delta-G solvation = 52.188575 kcal Electronic energy + Delta-G solvation = -21549.814666 eV Core-core repulsion = 18432.178053 eV Total energy + Delta-G solvation = -3117.636613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.50650 -40.43119 -37.51917 -36.45802 -35.20173 -34.24214 -32.46092 -30.07942 -28.36153 -27.20260 -26.85290 -24.65569 -23.59575 -23.38584 -21.96259 -21.32204 -19.58222 -19.02231 -18.40631 -18.19314 -16.66744 -16.53603 -16.41611 -15.84112 -15.71668 -14.94346 -14.58337 -14.48658 -14.05892 -13.89438 -13.61772 -13.44293 -13.05508 -12.93309 -12.77349 -12.59049 -12.45035 -12.37021 -12.23909 -12.07349 -11.98735 -11.93719 -11.75359 -11.60060 -11.52841 -11.22812 -10.95622 -10.76742 -10.56932 -10.47173 -8.12289 -6.23854 0.20392 1.28682 1.47197 1.48110 1.57245 1.93645 2.43872 2.49037 2.97125 3.05132 3.20697 3.47566 3.58989 3.81547 3.85844 4.11104 4.17642 4.24478 4.37980 4.43936 4.49672 4.63887 4.65529 4.71897 4.75226 4.82111 4.85924 4.93283 4.99244 4.99971 5.04281 5.08831 5.13099 5.14155 5.16776 5.24400 5.29018 5.39636 5.59926 5.82079 5.93585 6.26038 6.87315 7.22790 7.44939 8.96848 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.037934 B = 0.003747 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.944850 B = 7471.241490 C = 7761.608563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.048 3.952 3 H 0.002 0.998 4 C -0.530 4.530 5 H 0.072 0.928 6 C 0.013 3.987 7 N -0.923 5.923 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.261 1.261 11 H -0.290 1.290 12 C -0.015 4.015 13 C 0.208 3.792 14 N -0.507 5.507 15 C 0.180 3.820 16 C 0.028 3.972 17 H 0.104 0.896 18 C -0.117 4.117 19 C -0.109 4.109 20 C -0.082 4.082 21 C -0.127 4.127 22 C -0.177 4.177 23 C -0.142 4.142 24 N -0.400 5.400 25 O 0.052 5.948 26 H 0.038 0.962 27 H 0.021 0.979 28 H 0.036 0.964 29 H 0.261 0.739 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 -0.388 19.906 20.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.029 3.971 3 H 0.020 0.980 4 C -0.568 4.568 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.185 1.185 11 H -0.216 1.216 12 C -0.054 4.054 13 C -0.012 4.012 14 N -0.241 5.241 15 C -0.093 4.093 16 C 0.008 3.992 17 H 0.122 0.878 18 C -0.155 4.155 19 C -0.146 4.146 20 C -0.119 4.119 21 C -0.128 4.128 22 C -0.214 4.214 23 C -0.179 4.179 24 N -0.113 5.113 25 O -0.001 6.001 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.126 0.874 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.124 0.876 40 H 0.142 0.858 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.504 0.187 20.397 20.696 hybrid contribution 0.427 -0.275 -1.672 1.747 sum -3.076 -0.088 18.725 18.976 Atomic orbital electron populations 1.21594 0.98310 0.99551 0.98102 1.18603 0.92935 0.94856 0.90751 0.97997 1.21413 1.35735 1.08708 0.90915 0.91018 1.25777 0.95149 0.95428 1.02254 1.70090 1.44039 1.17713 1.24340 0.85561 0.79063 0.78328 0.78672 1.20100 1.18541 1.21587 1.20594 1.03379 0.97223 0.84186 1.29427 0.86084 0.88960 0.96697 1.71974 1.21016 1.24189 1.06937 1.26161 0.94947 0.91084 0.97113 1.19897 0.92384 0.99778 0.87185 0.87806 1.22461 1.01175 0.92278 0.99595 1.22444 0.99154 1.00947 0.92077 1.21899 0.98740 0.92075 0.99180 1.21758 1.02636 0.93950 0.94466 1.22803 0.92338 1.03788 1.02496 1.23122 0.97868 0.95538 1.01352 1.74497 1.09654 1.22144 1.04957 1.85265 1.42324 1.41900 1.30610 0.94274 0.95992 0.94486 0.93045 0.87107 0.87443 0.93050 0.90213 0.89875 0.89201 0.91981 0.88957 0.92407 0.87634 0.85820 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.86 71.98 0.64 -5.08 16 2 C 0.05 2.35 2.16 -11.54 -0.02 2.32 16 3 H 0.00 0.10 8.12 -2.39 -0.02 0.08 16 4 C -0.53 -27.49 8.49 25.60 0.22 -27.27 16 5 H 0.07 3.48 7.75 -2.91 -0.02 3.46 16 6 C 0.01 0.69 5.29 84.65 0.45 1.14 16 7 N -0.92 -53.23 11.98 21.45 0.26 -52.98 16 8 Si 0.96 42.18 29.54 68.60 2.03 44.20 16 9 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 C -0.01 -0.58 5.26 29.85 0.16 -0.42 16 13 C 0.21 8.07 6.97 88.38 0.62 8.68 16 14 N -0.51 -19.38 10.73 -303.22 -3.25 -22.63 16 15 C 0.18 6.21 5.31 138.46 0.74 6.95 16 16 C 0.03 0.73 3.30 -10.90 -0.04 0.69 16 17 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 18 C -0.12 -2.70 6.36 31.72 0.20 -2.50 16 19 C -0.11 -1.74 6.91 31.93 0.22 -1.52 16 20 C -0.08 -1.40 6.59 31.61 0.21 -1.19 16 21 C -0.13 -2.73 2.26 -51.97 -0.12 -2.85 16 22 C -0.18 -4.10 9.60 30.47 0.29 -3.81 16 23 C -0.14 -2.56 10.24 30.48 0.31 -2.25 16 24 N -0.40 -14.83 11.90 -60.35 -0.72 -15.55 16 25 O 0.05 2.02 11.31 74.88 0.85 2.87 16 26 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 27 H 0.02 0.99 6.59 -2.39 -0.02 0.98 16 28 H 0.04 1.98 6.83 -2.39 -0.02 1.97 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 31 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 32 H 0.05 1.42 7.68 -2.39 -0.02 1.40 16 33 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.14 8.11 -2.39 -0.02 1.13 16 38 H 0.06 1.68 7.30 -2.38 -0.02 1.66 16 39 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -61.75 334.65 4.04 -57.72 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.01 Total: 13.48 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 3.87 Total: -27.11 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -3.71 Total: -91.16 kcal Atomic # 8 Polarization: 2.02 SS G_CDS: 0.85 Total: 2.87 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -61.75 4.04 -57.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706249282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.905 kcal (2) G-P(sol) polarization free energy of solvation -61.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds