Wall clock time and date at job start Thu Apr 9 2020 14:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 C 1.53004 * 109.47200 * 240.00679 * 2 1 3 13 13 C 1.50699 * 109.47118 * 64.99794 * 12 2 1 14 14 N 1.31130 * 126.55237 * 90.00652 * 13 12 2 15 15 C 1.34497 * 105.61447 * 179.97438 * 14 13 12 16 16 C 1.50702 * 126.28294 * 179.97438 * 15 14 13 17 17 H 1.08999 * 110.05274 * 359.29965 * 16 15 14 18 18 C 1.54383 * 110.06853 * 237.81045 * 16 15 14 19 19 C 1.54924 * 104.22205 * 217.22038 * 18 16 15 20 20 C 1.54987 * 102.82198 * 37.72190 * 19 18 16 21 21 C 1.53480 * 110.06708 * 120.78390 * 16 15 14 22 22 C 1.52554 * 121.09029 * 335.14439 * 21 16 15 23 23 C 1.52570 * 121.05227 * 263.42678 * 21 16 15 24 24 N 1.29942 * 107.42195 * 359.97438 * 15 14 13 25 25 O 1.21293 * 110.25630 * 359.70790 * 24 15 14 26 26 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 27 27 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 29 29 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47007 * 185.00162 * 12 2 1 31 31 H 1.09000 * 109.46554 * 305.00084 * 12 2 1 32 32 H 1.08998 * 110.48113 * 335.90672 * 18 16 15 33 33 H 1.08999 * 110.47691 * 98.40581 * 18 16 15 34 34 H 1.09002 * 110.73669 * 156.05199 * 19 18 16 35 35 H 1.08994 * 110.74177 * 279.20281 * 19 18 16 36 36 H 1.09000 * 110.50961 * 81.06830 * 20 19 18 37 37 H 1.08991 * 110.51225 * 203.64096 * 20 19 18 38 38 H 1.08996 * 117.50951 * 357.03424 * 22 21 16 39 39 H 1.09006 * 117.51006 * 142.11485 * 22 21 16 40 40 H 1.09002 * 117.51299 * 217.93627 * 23 21 16 41 41 H 1.08995 * 117.51285 * 3.03558 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.7959 -1.1287 4.0136 10 1 1.8119 -0.4309 5.2203 11 1 1.8152 -2.5279 4.0019 12 6 2.0400 -0.7211 -1.2494 13 6 1.6413 0.0573 -2.4766 14 7 2.3348 1.0053 -3.0596 15 6 1.5920 1.4052 -4.1071 16 6 1.9539 2.4817 -5.0977 17 1 2.9199 2.9164 -4.8410 18 6 0.8663 3.5774 -5.1102 19 6 0.7660 3.9972 -6.5981 20 6 0.9449 2.6525 -7.3477 21 6 1.9992 1.8981 -6.5165 22 6 2.2644 0.4140 -6.7497 23 6 3.3174 1.4535 -7.1428 24 7 0.5052 0.6930 -4.1079 25 8 0.5166 -0.0916 -3.1830 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.7006 1.1552 3.4844 30 1 3.1263 -0.7993 -1.2057 31 1 1.6053 -1.7196 -1.2953 32 1 -0.0850 3.1745 -4.7627 33 1 1.1697 4.4229 -4.4929 34 1 -0.2107 4.4313 -6.8117 35 1 1.5621 4.6954 -6.8567 36 1 0.0062 2.0988 -7.3680 37 1 1.3072 2.8253 -8.3610 38 1 2.4689 -0.2043 -5.8757 39 1 1.7150 -0.0753 -7.5541 40 1 3.4607 1.6478 -8.2058 41 1 4.2146 1.5188 -6.5274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706249283.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:17 Heat of formation + Delta-G solvation = 51.879629 kcal Electronic energy + Delta-G solvation = -21536.726342 eV Core-core repulsion = 18419.076332 eV Total energy + Delta-G solvation = -3117.650010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.52131 -40.43942 -37.47077 -36.55111 -35.21586 -34.26375 -32.45616 -30.05392 -28.32487 -27.25305 -26.86198 -24.75792 -23.52148 -23.37033 -21.91264 -21.37418 -19.65003 -19.04246 -18.46414 -18.16045 -16.66740 -16.55610 -16.42945 -15.77729 -15.53111 -15.19788 -14.68408 -14.53644 -14.09598 -13.67654 -13.53726 -13.40077 -13.09950 -12.99522 -12.78440 -12.56970 -12.47086 -12.39583 -12.20161 -12.12293 -12.01844 -11.96823 -11.74527 -11.60887 -11.55612 -11.23379 -10.96560 -10.78011 -10.58626 -10.44694 -8.09440 -6.24804 0.19217 1.26640 1.48108 1.49183 1.56486 1.92274 2.43554 2.48499 2.96299 3.03763 3.20282 3.46592 3.58280 3.80811 3.85019 4.10295 4.16970 4.23633 4.37094 4.44208 4.48034 4.63200 4.65065 4.71508 4.72526 4.81238 4.84609 4.92688 4.96978 4.99693 5.04292 5.08665 5.09490 5.12868 5.16240 5.24272 5.29735 5.39298 5.59116 5.83172 6.03168 6.27129 6.85678 7.21750 7.44747 8.96276 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.036142 B = 0.003740 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.537909 B = 7485.651597 C = 7736.843727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.051 3.949 3 H -0.005 1.005 4 C -0.531 4.531 5 H 0.071 0.929 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.290 1.290 11 H -0.266 1.266 12 C -0.016 4.016 13 C 0.210 3.790 14 N -0.518 5.518 15 C 0.180 3.820 16 C 0.027 3.973 17 H 0.102 0.898 18 C -0.117 4.117 19 C -0.109 4.109 20 C -0.081 4.081 21 C -0.127 4.127 22 C -0.177 4.177 23 C -0.143 4.143 24 N -0.399 5.399 25 O 0.057 5.943 26 H 0.009 0.991 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.261 0.739 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.914 2.823 -19.455 19.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.031 3.969 3 H 0.013 0.987 4 C -0.569 4.569 5 H 0.090 0.910 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.216 1.216 11 H -0.191 1.191 12 C -0.054 4.054 13 C -0.010 4.010 14 N -0.252 5.252 15 C -0.093 4.093 16 C 0.007 3.993 17 H 0.120 0.880 18 C -0.155 4.155 19 C -0.146 4.146 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.214 4.214 23 C -0.179 4.179 24 N -0.111 5.111 25 O 0.004 5.996 26 H 0.028 0.972 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.143 0.857 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.538 3.274 -19.954 20.279 hybrid contribution 0.078 -0.516 1.609 1.692 sum 1.616 2.758 -18.345 18.621 Atomic orbital electron populations 1.21709 0.98150 0.99712 0.99041 1.18590 0.93076 0.94481 0.90714 0.98661 1.21408 1.31655 1.13067 0.90769 0.91038 1.25779 0.95074 0.95590 1.02211 1.70036 1.37513 1.24300 1.24131 0.85571 0.78819 0.78823 0.78209 1.19473 1.21578 1.19103 1.20614 1.02933 0.97748 0.84154 1.29406 0.81915 0.93699 0.95949 1.71951 1.31179 1.13214 1.08840 1.26152 0.87467 0.99941 0.95783 1.19902 1.01144 0.89671 0.88602 0.87951 1.22464 0.96649 0.96641 0.99758 1.22444 1.03379 0.97003 0.91779 1.21898 0.96546 0.94887 0.98516 1.21760 1.00382 0.96861 0.93813 1.22807 1.04638 0.91413 1.02532 1.23125 0.91657 1.00761 1.02382 1.74478 1.22703 1.06395 1.07506 1.85276 1.38928 1.45645 1.29740 0.97196 0.93816 0.92416 0.93007 0.87439 0.87095 0.92978 0.90273 0.89798 0.89223 0.91900 0.88908 0.92471 0.87516 0.85739 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.21 8.78 71.98 0.63 -5.58 16 2 C 0.05 2.50 2.29 -11.54 -0.03 2.47 16 3 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 4 C -0.53 -27.63 8.56 25.60 0.22 -27.41 16 5 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 6 C 0.01 0.66 5.30 84.65 0.45 1.11 16 7 N -0.92 -52.72 11.31 21.45 0.24 -52.48 16 8 Si 0.96 42.06 29.54 68.60 2.03 44.09 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 12 C -0.02 -0.61 5.26 29.85 0.16 -0.45 16 13 C 0.21 8.26 6.91 88.38 0.61 8.87 16 14 N -0.52 -20.52 11.55 -303.21 -3.50 -24.02 16 15 C 0.18 6.32 5.31 138.46 0.74 7.06 16 16 C 0.03 0.72 3.30 -10.91 -0.04 0.69 16 17 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 18 C -0.12 -2.74 6.36 31.72 0.20 -2.54 16 19 C -0.11 -1.76 6.91 31.93 0.22 -1.54 16 20 C -0.08 -1.40 6.59 31.61 0.21 -1.19 16 21 C -0.13 -2.77 2.26 -51.97 -0.12 -2.89 16 22 C -0.18 -4.13 9.60 30.48 0.29 -3.84 16 23 C -0.14 -2.61 10.24 30.48 0.31 -2.30 16 24 N -0.40 -14.84 11.90 -60.34 -0.72 -15.55 16 25 O 0.06 2.23 10.77 74.82 0.81 3.04 16 26 H 0.01 0.42 6.95 -2.38 -0.02 0.41 16 27 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 3.13 6.06 -2.38 -0.01 3.12 16 29 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 31 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 32 H 0.05 1.45 7.68 -2.39 -0.02 1.43 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.15 8.11 -2.39 -0.02 1.13 16 38 H 0.06 1.68 7.30 -2.39 -0.02 1.66 16 39 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 40 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -61.88 333.92 3.72 -58.16 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 1.01 Total: 14.31 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 3.86 Total: -27.54 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -3.98 Total: -92.05 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.81 Total: 3.04 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -61.88 3.72 -58.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706249283.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.043 kcal (2) G-P(sol) polarization free energy of solvation -61.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds