Wall clock time and date at job start Thu Apr 9 2020 14:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46715 * 2 1 4 4 C 1.50703 * 109.47443 * 119.99410 * 2 1 3 5 5 H 1.07994 * 120.00242 * 120.00221 * 4 2 1 6 6 C 1.37880 * 119.99804 * 300.00441 * 4 2 1 7 7 N 1.31512 * 120.00237 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99846 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46781 * 60.00084 * 8 6 4 10 10 H 1.48507 * 109.46998 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47216 * 300.00149 * 8 6 4 12 12 C 1.52998 * 109.47620 * 239.99774 * 2 1 3 13 13 C 1.50695 * 109.46908 * 64.99604 * 12 2 1 14 14 N 1.31128 * 126.55321 * 90.00759 * 13 12 2 15 15 C 1.34490 * 105.61935 * 180.02562 * 14 13 12 16 16 C 1.50702 * 126.29079 * 179.97438 * 15 14 13 17 17 H 1.09002 * 110.05219 * 0.70078 * 16 15 14 18 18 C 1.54390 * 110.11509 * 122.21866 * 16 15 14 19 19 C 1.54926 * 104.21948 * 142.82452 * 18 16 15 20 20 C 1.54988 * 102.82196 * 322.27335 * 19 18 16 21 21 C 1.53485 * 110.06928 * 239.21573 * 16 15 14 22 22 C 1.52565 * 121.05513 * 96.48785 * 21 16 15 23 23 C 1.52546 * 121.08492 * 24.77425 * 21 16 15 24 24 N 1.29949 * 107.42223 * 0.23915 * 15 14 13 25 25 O 1.21297 * 110.25196 * 359.58065 * 24 15 14 26 26 H 1.08997 * 109.47341 * 60.00446 * 1 2 3 27 27 H 1.09004 * 109.46766 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47514 * 299.99960 * 1 2 3 29 29 H 0.97004 * 120.00411 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46926 * 305.00026 * 12 2 1 31 31 H 1.08994 * 109.47514 * 184.99872 * 12 2 1 32 32 H 1.09004 * 110.47861 * 261.50729 * 18 16 15 33 33 H 1.08991 * 110.48200 * 24.13995 * 18 16 15 34 34 H 1.08997 * 110.74292 * 203.93949 * 19 18 16 35 35 H 1.09008 * 110.89848 * 80.67609 * 19 18 16 36 36 H 1.09005 * 110.50853 * 278.92567 * 20 19 18 37 37 H 1.09002 * 110.63234 * 156.27100 * 20 19 18 38 38 H 1.08998 * 117.50835 * 356.97579 * 22 21 16 39 39 H 1.08997 * 117.51167 * 142.06075 * 22 21 16 40 40 H 1.09008 * 117.50785 * 217.88582 * 23 21 16 41 41 H 1.08999 * 117.51255 * 2.93317 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1316 6 6 1.6993 -0.2391 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3214 -1.1199 4.0081 9 1 3.8065 -1.1203 4.0082 10 1 1.8269 -0.4194 5.2206 11 1 1.8260 -2.5199 4.0080 12 6 2.0401 -0.7213 -1.2492 13 6 1.6414 0.0569 -2.4765 14 7 2.3348 1.0048 -3.0596 15 6 1.5916 1.4055 -4.1065 16 6 1.9531 2.4821 -5.0970 17 1 2.9307 2.8994 -4.8553 18 6 1.9627 1.9048 -6.5289 19 6 1.3902 3.0479 -7.4040 20 6 0.2892 3.6559 -6.4983 21 6 0.8899 3.5891 -5.0832 22 6 1.0841 4.8565 -4.2565 23 6 0.0213 3.8314 -3.8528 24 7 0.5019 0.6975 -4.1036 25 8 0.5132 -0.0868 -3.1784 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7086 1.1615 3.4844 30 1 1.6055 -1.7199 -1.2950 31 1 3.1264 -0.7994 -1.2055 32 1 2.9803 1.6627 -6.8356 33 1 1.3253 1.0228 -6.5887 34 1 0.9586 2.6514 -8.3230 35 1 2.1583 3.7882 -7.6279 36 1 -0.6229 3.0616 -6.5544 37 1 0.0882 4.6897 -6.7794 38 1 1.9800 4.9226 -3.6392 39 1 0.7392 5.7964 -4.6874 40 1 -1.0229 4.0972 -4.0182 41 1 0.2176 3.2229 -2.9701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706249284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:20 Heat of formation + Delta-G solvation = 67.274300 kcal Electronic energy + Delta-G solvation = -21658.540928 eV Core-core repulsion = 18541.558481 eV Total energy + Delta-G solvation = -3116.982447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.03987 -39.45941 -35.72115 -35.04178 -34.21178 -32.53771 -30.74381 -28.97073 -26.59124 -25.92436 -25.22240 -23.30556 -22.37903 -22.10575 -20.72663 -19.83729 -18.44734 -17.54262 -16.96685 -16.29092 -15.66152 -15.39639 -14.72063 -14.64345 -13.91218 -13.65563 -13.36380 -13.10905 -12.82390 -12.67122 -11.95555 -11.82414 -11.72018 -11.46766 -11.35346 -11.21439 -11.18311 -10.96720 -10.81813 -10.80801 -10.69294 -10.46598 -10.26446 -10.21265 -9.92265 -9.89189 -9.74011 -9.05647 -8.96943 -8.40778 -6.05684 -4.14228 1.70708 2.71511 3.29644 3.34658 3.35953 3.45278 3.58767 4.11611 4.21428 4.39373 4.49616 4.68242 4.79102 4.85695 5.04685 5.09872 5.25783 5.29826 5.44546 5.58233 5.65544 5.68466 5.76457 5.78671 5.84278 5.94946 5.98745 6.01730 6.10906 6.15377 6.20703 6.22302 6.26870 6.51122 6.57579 6.83488 7.04071 7.21094 7.62776 7.84133 8.03430 8.29155 8.71338 8.88041 9.51315 11.00455 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.032686 B = 0.004003 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.434706 B = 6993.250735 C = 7356.778040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.051 3.949 3 H 0.034 0.966 4 C -0.518 4.518 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C -0.027 4.027 13 C 0.215 3.785 14 N -0.499 5.499 15 C 0.173 3.827 16 C 0.035 3.965 17 H 0.101 0.899 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.124 4.124 22 C -0.163 4.163 23 C -0.160 4.160 24 N -0.391 5.391 25 O 0.067 5.933 26 H 0.004 0.996 27 H 0.031 0.969 28 H 0.086 0.914 29 H 0.262 0.738 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.197 4.439 -16.537 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.032 3.968 3 H 0.052 0.948 4 C -0.557 4.557 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.066 4.066 13 C -0.004 4.004 14 N -0.232 5.232 15 C -0.100 4.100 16 C 0.015 3.985 17 H 0.119 0.881 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.200 4.200 23 C -0.197 4.197 24 N -0.101 5.101 25 O 0.011 5.989 26 H 0.023 0.977 27 H 0.050 0.950 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.174 4.909 -17.037 17.731 hybrid contribution 0.259 -0.520 1.192 1.326 sum 0.086 4.389 -15.845 16.442 Atomic orbital electron populations 1.21877 0.98203 0.99468 1.00241 1.18722 0.93056 0.96198 0.88860 0.94805 1.20990 1.31914 1.12732 0.90015 0.92182 1.24944 0.94870 0.94904 0.99064 1.69881 1.36222 1.22730 1.23680 0.86601 0.79233 0.79731 0.82107 1.20168 1.21296 1.20153 1.20821 1.02368 0.97378 0.86035 1.29491 0.81557 0.93564 0.95826 1.71937 1.30527 1.12869 1.07913 1.25484 0.88285 0.99777 0.96431 1.19582 0.98901 0.88927 0.91057 0.88132 1.22428 1.01708 0.98688 0.92327 1.22440 0.98087 0.97434 0.97648 1.21863 0.98098 1.00836 0.91466 1.21642 1.00252 0.97186 0.93428 1.23033 1.01390 0.92854 1.02690 1.22876 0.96405 1.02563 0.97864 1.74499 1.21902 1.06106 1.07603 1.85299 1.38768 1.45240 1.29611 0.97724 0.94953 0.89572 0.92787 0.89325 0.88356 0.90905 0.90857 0.91194 0.91096 0.90993 0.91416 0.88521 0.88570 0.88647 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.78 37.16 0.33 -3.00 16 2 C 0.05 1.23 2.29 -91.77 -0.21 1.02 16 3 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.52 -13.49 8.56 -34.44 -0.29 -13.79 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.86 11.32 55.43 0.63 -24.23 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 C -0.03 -0.53 5.26 -27.89 -0.15 -0.67 16 13 C 0.21 4.19 6.92 -13.06 -0.09 4.10 16 14 N -0.50 -9.75 11.55 -9.87 -0.11 -9.86 16 15 C 0.17 3.03 5.32 -156.37 -0.83 2.19 16 16 C 0.04 0.49 3.30 -90.79 -0.30 0.19 16 17 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 18 C -0.11 -1.28 6.36 -24.99 -0.16 -1.44 16 19 C -0.12 -1.08 6.91 -24.66 -0.17 -1.25 16 20 C -0.09 -0.88 6.58 -25.22 -0.17 -1.05 16 21 C -0.12 -1.57 2.26 -154.25 -0.35 -1.92 16 22 C -0.16 -1.95 10.23 -26.91 -0.28 -2.22 16 23 C -0.16 -2.28 9.58 -26.92 -0.26 -2.54 16 24 N -0.39 -7.19 11.90 30.90 0.37 -6.82 16 25 O 0.07 1.29 10.75 18.09 0.19 1.48 16 26 H 0.00 0.09 6.93 -51.93 -0.36 -0.27 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 31 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.93 7.69 -51.93 -0.40 0.53 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 41 H 0.09 1.59 7.30 -51.93 -0.38 1.22 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -28.35 333.89 -8.42 -36.77 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.49 Total: 0.83 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -3.02 Total: -18.77 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.88 Total: -40.91 kcal Atomic # 8 Polarization: 1.29 SS G_CDS: 0.19 Total: 1.48 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.35 -8.42 -36.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706249284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.047 kcal (2) G-P(sol) polarization free energy of solvation -28.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds