Wall clock time and date at job start Thu Apr 9 2020 14:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46715 * 2 1 4 4 C 1.50703 * 109.47443 * 119.99410 * 2 1 3 5 5 H 1.07994 * 120.00242 * 120.00221 * 4 2 1 6 6 C 1.37880 * 119.99804 * 300.00441 * 4 2 1 7 7 N 1.31512 * 120.00237 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99846 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46781 * 60.00084 * 8 6 4 10 10 H 1.48507 * 109.46998 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47216 * 300.00149 * 8 6 4 12 12 C 1.52998 * 109.47620 * 239.99774 * 2 1 3 13 13 C 1.50695 * 109.46908 * 64.99604 * 12 2 1 14 14 N 1.31128 * 126.55321 * 90.00759 * 13 12 2 15 15 C 1.34490 * 105.61935 * 180.02562 * 14 13 12 16 16 C 1.50702 * 126.29079 * 179.97438 * 15 14 13 17 17 H 1.09002 * 110.05219 * 0.70078 * 16 15 14 18 18 C 1.54390 * 110.11509 * 122.21866 * 16 15 14 19 19 C 1.54926 * 104.21948 * 142.82452 * 18 16 15 20 20 C 1.54988 * 102.82196 * 322.27335 * 19 18 16 21 21 C 1.53485 * 110.06928 * 239.21573 * 16 15 14 22 22 C 1.52565 * 121.05513 * 96.48785 * 21 16 15 23 23 C 1.52546 * 121.08492 * 24.77425 * 21 16 15 24 24 N 1.29949 * 107.42223 * 0.23915 * 15 14 13 25 25 O 1.21297 * 110.25196 * 359.58065 * 24 15 14 26 26 H 1.08997 * 109.47341 * 60.00446 * 1 2 3 27 27 H 1.09004 * 109.46766 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47514 * 299.99960 * 1 2 3 29 29 H 0.97004 * 120.00411 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46926 * 305.00026 * 12 2 1 31 31 H 1.08994 * 109.47514 * 184.99872 * 12 2 1 32 32 H 1.09004 * 110.47861 * 261.50729 * 18 16 15 33 33 H 1.08991 * 110.48200 * 24.13995 * 18 16 15 34 34 H 1.08997 * 110.74292 * 203.93949 * 19 18 16 35 35 H 1.09008 * 110.89848 * 80.67609 * 19 18 16 36 36 H 1.09005 * 110.50853 * 278.92567 * 20 19 18 37 37 H 1.09002 * 110.63234 * 156.27100 * 20 19 18 38 38 H 1.08998 * 117.50835 * 356.97579 * 22 21 16 39 39 H 1.08997 * 117.51167 * 142.06075 * 22 21 16 40 40 H 1.09008 * 117.50785 * 217.88582 * 23 21 16 41 41 H 1.08999 * 117.51255 * 2.93317 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1316 6 6 1.6993 -0.2391 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3214 -1.1199 4.0081 9 1 3.8065 -1.1203 4.0082 10 1 1.8269 -0.4194 5.2206 11 1 1.8260 -2.5199 4.0080 12 6 2.0401 -0.7213 -1.2492 13 6 1.6414 0.0569 -2.4765 14 7 2.3348 1.0048 -3.0596 15 6 1.5916 1.4055 -4.1065 16 6 1.9531 2.4821 -5.0970 17 1 2.9307 2.8994 -4.8553 18 6 1.9627 1.9048 -6.5289 19 6 1.3902 3.0479 -7.4040 20 6 0.2892 3.6559 -6.4983 21 6 0.8899 3.5891 -5.0832 22 6 1.0841 4.8565 -4.2565 23 6 0.0213 3.8314 -3.8528 24 7 0.5019 0.6975 -4.1036 25 8 0.5132 -0.0868 -3.1784 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7086 1.1615 3.4844 30 1 1.6055 -1.7199 -1.2950 31 1 3.1264 -0.7994 -1.2055 32 1 2.9803 1.6627 -6.8356 33 1 1.3253 1.0228 -6.5887 34 1 0.9586 2.6514 -8.3230 35 1 2.1583 3.7882 -7.6279 36 1 -0.6229 3.0616 -6.5544 37 1 0.0882 4.6897 -6.7794 38 1 1.9800 4.9226 -3.6392 39 1 0.7392 5.7964 -4.6874 40 1 -1.0229 4.0972 -4.0182 41 1 0.2176 3.2229 -2.9701 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706249284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:19 Heat of formation + Delta-G solvation = 51.691069 kcal Electronic energy + Delta-G solvation = -21659.216668 eV Core-core repulsion = 18541.558481 eV Total energy + Delta-G solvation = -3117.658187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.51827 -40.45759 -37.47275 -36.55875 -35.21883 -34.26411 -32.45936 -30.05304 -28.32986 -27.25857 -26.85921 -24.75896 -23.53454 -23.40214 -21.86532 -21.43044 -19.61600 -19.06821 -18.45997 -18.16728 -16.64950 -16.58298 -16.43616 -15.79171 -15.51794 -15.21112 -14.70004 -14.53633 -14.09273 -13.65618 -13.54971 -13.41140 -13.10377 -12.97271 -12.79150 -12.60370 -12.49868 -12.42961 -12.20365 -12.09633 -12.02165 -11.95492 -11.74932 -11.58374 -11.55943 -11.25479 -10.97285 -10.81186 -10.59018 -10.45232 -8.09828 -6.25287 0.19280 1.26612 1.47739 1.48895 1.56202 1.92468 2.42523 2.47618 2.94542 3.03504 3.19914 3.46494 3.57700 3.79374 3.84190 4.08853 4.16210 4.25260 4.37337 4.44139 4.48483 4.61619 4.64386 4.69540 4.72639 4.81049 4.84241 4.90290 4.96866 5.00158 5.04245 5.07741 5.09263 5.12123 5.14429 5.24967 5.29244 5.40963 5.58558 5.82304 6.02387 6.26509 6.85287 7.21754 7.44317 8.95880 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.032686 B = 0.004003 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.434706 B = 6993.250735 C = 7356.778040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.052 3.948 3 H -0.006 1.006 4 C -0.531 4.531 5 H 0.072 0.928 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.290 1.290 11 H -0.266 1.266 12 C -0.016 4.016 13 C 0.209 3.791 14 N -0.518 5.518 15 C 0.180 3.820 16 C 0.025 3.975 17 H 0.103 0.897 18 C -0.110 4.110 19 C -0.108 4.108 20 C -0.083 4.083 21 C -0.121 4.121 22 C -0.145 4.145 23 C -0.185 4.185 24 N -0.399 5.399 25 O 0.057 5.943 26 H 0.008 0.992 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.261 0.739 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.907 4.428 -18.254 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.032 3.968 3 H 0.012 0.988 4 C -0.569 4.569 5 H 0.090 0.910 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.216 1.216 11 H -0.191 1.191 12 C -0.055 4.055 13 C -0.010 4.010 14 N -0.252 5.252 15 C -0.093 4.093 16 C 0.005 3.995 17 H 0.121 0.879 18 C -0.149 4.149 19 C -0.146 4.146 20 C -0.120 4.120 21 C -0.122 4.122 22 C -0.182 4.182 23 C -0.222 4.222 24 N -0.111 5.111 25 O 0.004 5.996 26 H 0.027 0.973 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.144 0.856 40 H 0.123 0.877 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.535 4.872 -18.758 19.388 hybrid contribution 0.036 -0.468 1.712 1.776 sum 0.571 4.405 -17.045 17.615 Atomic orbital electron populations 1.21699 0.98187 0.99692 0.98943 1.18579 0.93030 0.94398 0.90778 0.98829 1.21410 1.31725 1.13019 0.90744 0.90982 1.25788 0.95079 0.95567 1.02236 1.70042 1.37551 1.24278 1.24126 0.85569 0.78835 0.78824 0.78181 1.19451 1.21596 1.19065 1.20619 1.02991 0.97780 0.84103 1.29408 0.81818 0.93739 0.96027 1.71943 1.31424 1.13064 1.08775 1.26155 0.87394 0.99714 0.96072 1.19947 0.99387 0.88459 0.91686 0.87870 1.22444 1.02530 0.98929 0.90970 1.22449 0.97969 0.96722 0.97421 1.21909 0.97987 1.02270 0.89839 1.21796 0.99265 0.96934 0.94184 1.23115 0.99838 0.93595 1.01652 1.22767 0.97741 1.04250 0.97457 1.74479 1.22368 1.06537 1.07693 1.85275 1.38696 1.45698 1.29948 0.97318 0.93781 0.92491 0.93026 0.87016 0.87362 0.89437 0.92461 0.89436 0.89222 0.91861 0.89134 0.89341 0.85612 0.87739 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.21 8.78 71.98 0.63 -5.57 16 2 C 0.05 2.55 2.29 -11.54 -0.03 2.52 16 3 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 4 C -0.53 -27.68 8.56 25.60 0.22 -27.46 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -52.92 11.32 21.45 0.24 -52.68 16 8 Si 0.96 42.14 29.54 68.60 2.03 44.17 16 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 12 C -0.02 -0.63 5.26 29.85 0.16 -0.47 16 13 C 0.21 8.27 6.92 88.38 0.61 8.88 16 14 N -0.52 -20.57 11.55 -303.20 -3.50 -24.07 16 15 C 0.18 6.33 5.32 138.46 0.74 7.06 16 16 C 0.03 0.67 3.30 -10.90 -0.04 0.64 16 17 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 18 C -0.11 -2.28 6.36 31.72 0.20 -2.08 16 19 C -0.11 -1.61 6.91 31.93 0.22 -1.38 16 20 C -0.08 -1.48 6.58 31.57 0.21 -1.27 16 21 C -0.12 -2.90 2.26 -52.02 -0.12 -3.02 16 22 C -0.15 -3.28 10.23 30.48 0.31 -2.97 16 23 C -0.18 -5.34 9.58 30.47 0.29 -5.05 16 24 N -0.40 -14.85 11.90 -60.32 -0.72 -15.57 16 25 O 0.06 2.22 10.75 74.80 0.80 3.03 16 26 H 0.01 0.37 6.93 -2.39 -0.02 0.35 16 27 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 29 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 31 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 32 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.06 1.38 7.69 -2.39 -0.02 1.36 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.09 1.24 8.11 -2.39 -0.02 1.22 16 38 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 41 H 0.05 1.76 7.30 -2.39 -0.02 1.75 16 Total: -1.00 -62.56 333.89 3.72 -58.84 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 1.01 Total: 15.36 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 3.86 Total: -29.07 kcal Atomic # 7 Polarization: -88.34 SS G_CDS: -3.98 Total: -92.32 kcal Atomic # 8 Polarization: 2.22 SS G_CDS: 0.80 Total: 3.03 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -62.56 3.72 -58.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706249284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.529 kcal (2) G-P(sol) polarization free energy of solvation -62.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds