Wall clock time and date at job start Thu Apr 9 2020 14:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47518 * 2 1 4 4 C 1.53006 * 109.47021 * 239.99913 * 2 1 3 5 5 C 1.50699 * 109.46866 * 65.00201 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99834 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00496 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47141 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47494 * 119.99680 * 9 7 5 12 12 H 1.48505 * 109.47047 * 239.99860 * 9 7 5 13 13 C 1.50699 * 109.47336 * 120.00470 * 2 1 3 14 14 N 1.31129 * 126.55201 * 239.99981 * 13 2 1 15 15 C 1.34496 * 105.61694 * 179.97438 * 14 13 2 16 16 C 1.50698 * 126.28598 * 179.97438 * 15 14 13 17 17 H 1.09000 * 110.05815 * 1.48091 * 16 15 14 18 18 C 1.54384 * 110.07433 * 123.03151 * 16 15 14 19 19 C 1.54924 * 104.22610 * 142.79145 * 18 16 15 20 20 C 1.54990 * 102.81824 * 322.27591 * 19 18 16 21 21 C 1.53487 * 110.06730 * 239.99599 * 16 15 14 22 22 C 1.52571 * 121.05196 * 96.54145 * 21 16 15 23 23 C 1.52550 * 121.08487 * 24.83033 * 21 16 15 24 24 N 1.29947 * 107.42248 * 359.97438 * 15 14 13 25 25 O 1.21303 * 110.25147 * 359.70392 * 24 15 14 26 26 H 1.09002 * 109.46905 * 300.00035 * 1 2 3 27 27 H 1.09004 * 109.47446 * 59.99546 * 1 2 3 28 28 H 1.08992 * 109.47518 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 185.00420 * 4 2 1 30 30 H 1.09000 * 109.47050 * 305.00249 * 4 2 1 31 31 H 0.96992 * 120.00032 * 180.02562 * 8 7 5 32 32 H 1.08997 * 110.47923 * 261.48326 * 18 16 15 33 33 H 1.09006 * 110.47855 * 24.10732 * 18 16 15 34 34 H 1.08994 * 110.74650 * 203.94101 * 19 18 16 35 35 H 1.08999 * 110.89427 * 80.67547 * 19 18 16 36 36 H 1.09004 * 110.51013 * 278.91999 * 20 19 18 37 37 H 1.08998 * 110.62824 * 156.27234 * 20 19 18 38 38 H 1.08996 * 117.51520 * 356.97936 * 22 21 16 39 39 H 1.09000 * 117.50493 * 142.06533 * 22 21 16 40 40 H 1.09000 * 117.51207 * 217.88872 * 23 21 16 41 41 H 1.09000 * 117.50857 * 2.96895 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9922 -0.4022 -3.7283 8 7 2.6754 -1.5193 -3.8513 9 14 1.4987 0.5629 -5.2496 10 1 0.7422 1.7746 -4.8433 11 1 2.7170 0.9668 -5.9965 12 1 0.6439 -0.2855 -6.1184 13 6 2.0324 -0.7105 1.2304 14 7 2.7893 -0.2009 2.1721 15 6 2.9810 -1.1934 3.0593 16 6 3.7883 -1.1110 4.3291 17 1 4.1884 -0.1047 4.4531 18 6 2.9088 -1.4857 5.5414 19 6 3.8623 -2.2732 6.4746 20 6 4.7217 -3.0910 5.4772 21 6 4.9334 -2.1323 4.2925 22 6 6.3383 -1.7243 3.8593 23 6 5.4948 -2.6390 2.9676 24 7 2.3423 -2.2365 2.6202 25 8 1.7856 -1.9782 1.5739 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1262 -0.7996 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 2.9226 -1.8422 -4.7319 32 1 2.5432 -0.5877 6.0394 33 1 2.0758 -2.1152 5.2281 34 1 3.2992 -2.9353 7.1322 35 1 4.4864 -1.5940 7.0553 36 1 4.1864 -3.9842 5.1549 37 1 5.6777 -3.3610 5.9257 38 1 6.4848 -0.6956 3.5300 39 1 7.1786 -2.1730 4.3890 40 1 5.7803 -3.6894 2.9105 41 1 5.0864 -2.2120 2.0516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707087501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:22 Heat of formation + Delta-G solvation = 64.011552 kcal Electronic energy + Delta-G solvation = -21506.147700 eV Core-core repulsion = 18389.023770 eV Total energy + Delta-G solvation = -3117.123930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.06770 -39.48973 -35.85702 -35.10066 -34.23057 -32.56098 -30.98079 -28.94618 -27.13350 -25.95111 -24.60939 -23.27718 -22.56209 -22.41357 -20.99062 -20.02032 -18.26719 -17.48235 -16.86573 -16.54625 -15.67984 -15.41404 -14.75168 -14.58265 -14.44589 -13.62888 -13.39545 -13.12706 -12.70045 -12.62392 -12.10098 -11.97621 -11.82564 -11.57339 -11.40607 -11.29403 -11.22339 -11.00411 -10.89017 -10.83931 -10.80239 -10.52184 -10.51257 -10.29683 -10.14100 -9.86881 -9.75373 -9.24101 -9.11479 -8.45178 -6.08828 -4.12743 1.68218 2.66960 3.27716 3.35473 3.38352 3.42583 3.54574 4.07762 4.17016 4.39920 4.46797 4.65022 4.75839 4.82058 5.02225 5.07356 5.25054 5.27750 5.41324 5.54745 5.61449 5.66405 5.68788 5.75524 5.78812 5.81893 5.84915 5.91414 5.96309 6.05500 6.09839 6.12283 6.19295 6.31201 6.41628 6.57810 6.68840 6.83177 7.48302 7.56570 7.86816 8.23008 8.68098 8.91864 9.51816 11.02525 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030934 B = 0.003930 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.945469 B = 7122.599488 C = 7622.114624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 H 0.104 0.896 4 C 0.029 3.971 5 C -0.520 4.520 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.216 3.784 14 N -0.503 5.503 15 C 0.172 3.828 16 C 0.036 3.964 17 H 0.100 0.900 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.086 4.086 21 C -0.124 4.124 22 C -0.163 4.163 23 C -0.161 4.161 24 N -0.389 5.389 25 O 0.073 5.927 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.021 0.979 30 H 0.029 0.971 31 H 0.262 0.738 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.414 -0.652 17.899 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.122 0.878 4 C -0.009 4.009 5 C -0.559 4.559 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.003 4.003 14 N -0.237 5.237 15 C -0.101 4.101 16 C 0.016 3.984 17 H 0.118 0.882 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.200 4.200 23 C -0.198 4.198 24 N -0.098 5.098 25 O 0.017 5.983 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.706 -1.218 18.393 18.631 hybrid contribution -0.159 0.484 -1.223 1.325 sum 2.546 -0.734 17.170 17.373 Atomic orbital electron populations 1.21775 0.93111 1.02499 1.01890 1.20327 0.96481 0.98818 0.86544 0.87765 1.19237 0.96801 0.96058 0.88779 1.21098 1.35779 1.08648 0.90333 0.91909 1.25004 0.94979 0.95024 0.99228 1.69978 1.38294 1.21005 1.23680 0.86494 0.78319 0.80042 0.82916 1.19566 1.20999 1.20958 1.29551 0.91586 0.81898 0.97263 1.71941 1.18525 1.29754 1.03465 1.25483 0.99877 0.85555 0.99204 1.19582 0.91791 1.00027 0.87021 0.88154 1.22434 0.97936 1.00549 0.94283 1.22437 0.97527 0.98601 0.97033 1.21865 0.99883 0.97146 0.93397 1.21647 0.94042 0.99542 0.97267 1.23033 0.92891 1.00730 1.03322 1.22882 1.03235 0.99755 0.93890 1.74532 1.13193 1.23614 0.98509 1.85290 1.53910 1.30146 1.28927 0.94127 0.89697 0.92339 0.96063 0.95298 0.92851 0.90906 0.90783 0.91154 0.91106 0.90936 0.91394 0.88577 0.88546 0.88556 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.98 37.16 0.33 -2.00 16 2 C 0.00 -0.03 2.81 -91.77 -0.26 -0.28 16 3 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 4 C 0.03 0.72 4.43 -27.88 -0.12 0.59 16 5 C -0.52 -13.67 8.41 -34.44 -0.29 -13.96 16 6 H 0.06 1.56 7.06 -52.48 -0.37 1.19 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 9 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.22 4.25 7.02 -13.06 -0.09 4.16 16 14 N -0.50 -9.66 11.55 -9.87 -0.11 -9.77 16 15 C 0.17 2.97 5.32 -156.37 -0.83 2.14 16 16 C 0.04 0.48 3.31 -90.79 -0.30 0.18 16 17 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 18 C -0.11 -1.28 6.36 -24.99 -0.16 -1.43 16 19 C -0.12 -1.07 6.91 -24.67 -0.17 -1.24 16 20 C -0.09 -0.87 6.58 -25.23 -0.17 -1.04 16 21 C -0.12 -1.53 2.26 -154.25 -0.35 -1.88 16 22 C -0.16 -1.87 10.23 -26.91 -0.28 -2.14 16 23 C -0.16 -2.23 9.61 -26.92 -0.26 -2.49 16 24 N -0.39 -7.24 11.89 30.90 0.37 -6.87 16 25 O 0.07 1.46 11.31 18.10 0.20 1.66 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.94 7.66 -51.93 -0.40 0.54 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 38 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.09 1.54 7.30 -51.93 -0.38 1.16 16 LS Contribution 337.81 15.07 5.09 5.09 Total: -1.00 -29.19 337.81 -8.33 -37.52 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.56 Total: -0.33 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.03 Total: -17.85 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: 0.99 Total: -41.82 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.20 Total: 1.66 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.19 -8.33 -37.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707087501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.528 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds