Wall clock time and date at job start Thu Apr 9 2020 14:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47518 * 2 1 4 4 C 1.53006 * 109.47021 * 239.99913 * 2 1 3 5 5 C 1.50699 * 109.46866 * 65.00201 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37874 * 120.00270 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99834 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00496 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47141 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47494 * 119.99680 * 9 7 5 12 12 H 1.48505 * 109.47047 * 239.99860 * 9 7 5 13 13 C 1.50699 * 109.47336 * 120.00470 * 2 1 3 14 14 N 1.31129 * 126.55201 * 239.99981 * 13 2 1 15 15 C 1.34496 * 105.61694 * 179.97438 * 14 13 2 16 16 C 1.50698 * 126.28598 * 179.97438 * 15 14 13 17 17 H 1.09000 * 110.05815 * 1.48091 * 16 15 14 18 18 C 1.54384 * 110.07433 * 123.03151 * 16 15 14 19 19 C 1.54924 * 104.22610 * 142.79145 * 18 16 15 20 20 C 1.54990 * 102.81824 * 322.27591 * 19 18 16 21 21 C 1.53487 * 110.06730 * 239.99599 * 16 15 14 22 22 C 1.52571 * 121.05196 * 96.54145 * 21 16 15 23 23 C 1.52550 * 121.08487 * 24.83033 * 21 16 15 24 24 N 1.29947 * 107.42248 * 359.97438 * 15 14 13 25 25 O 1.21303 * 110.25147 * 359.70392 * 24 15 14 26 26 H 1.09002 * 109.46905 * 300.00035 * 1 2 3 27 27 H 1.09004 * 109.47446 * 59.99546 * 1 2 3 28 28 H 1.08992 * 109.47518 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 185.00420 * 4 2 1 30 30 H 1.09000 * 109.47050 * 305.00249 * 4 2 1 31 31 H 0.96992 * 120.00032 * 180.02562 * 8 7 5 32 32 H 1.08997 * 110.47923 * 261.48326 * 18 16 15 33 33 H 1.09006 * 110.47855 * 24.10732 * 18 16 15 34 34 H 1.08994 * 110.74650 * 203.94101 * 19 18 16 35 35 H 1.08999 * 110.89427 * 80.67547 * 19 18 16 36 36 H 1.09004 * 110.51013 * 278.91999 * 20 19 18 37 37 H 1.08998 * 110.62824 * 156.27234 * 20 19 18 38 38 H 1.08996 * 117.51520 * 356.97936 * 22 21 16 39 39 H 1.09000 * 117.50493 * 142.06533 * 22 21 16 40 40 H 1.09000 * 117.51207 * 217.88872 * 23 21 16 41 41 H 1.09000 * 117.50857 * 2.96895 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9922 -0.4022 -3.7283 8 7 2.6754 -1.5193 -3.8513 9 14 1.4987 0.5629 -5.2496 10 1 0.7422 1.7746 -4.8433 11 1 2.7170 0.9668 -5.9965 12 1 0.6439 -0.2855 -6.1184 13 6 2.0324 -0.7105 1.2304 14 7 2.7893 -0.2009 2.1721 15 6 2.9810 -1.1934 3.0593 16 6 3.7883 -1.1110 4.3291 17 1 4.1884 -0.1047 4.4531 18 6 2.9088 -1.4857 5.5414 19 6 3.8623 -2.2732 6.4746 20 6 4.7217 -3.0910 5.4772 21 6 4.9334 -2.1323 4.2925 22 6 6.3383 -1.7243 3.8593 23 6 5.4948 -2.6390 2.9676 24 7 2.3423 -2.2365 2.6202 25 8 1.7856 -1.9782 1.5739 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1262 -0.7996 -1.2056 30 1 1.6053 -1.7198 -1.2952 31 1 2.9226 -1.8422 -4.7319 32 1 2.5432 -0.5877 6.0394 33 1 2.0758 -2.1152 5.2281 34 1 3.2992 -2.9353 7.1322 35 1 4.4864 -1.5940 7.0553 36 1 4.1864 -3.9842 5.1549 37 1 5.6777 -3.3610 5.9257 38 1 6.4848 -0.6956 3.5300 39 1 7.1786 -2.1730 4.3890 40 1 5.7803 -3.6894 2.9105 41 1 5.0864 -2.2120 2.0516 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707087501.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:21 Heat of formation + Delta-G solvation = 47.446486 kcal Electronic energy + Delta-G solvation = -21506.866015 eV Core-core repulsion = 18389.023770 eV Total energy + Delta-G solvation = -3117.842246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.56112 -40.47106 -37.54376 -36.57702 -35.21211 -34.48738 -32.50759 -30.03268 -29.01747 -26.87977 -26.29756 -24.76612 -24.19530 -23.44813 -22.09380 -21.30376 -19.45055 -18.99920 -18.63201 -18.23156 -16.67843 -16.54081 -16.43522 -16.07348 -15.77342 -15.10733 -14.57737 -14.44492 -14.10345 -13.86705 -13.65155 -13.43105 -13.10912 -12.95317 -12.81693 -12.70596 -12.51721 -12.46248 -12.23896 -12.13454 -12.11209 -11.97358 -11.82257 -11.59559 -11.51905 -11.26378 -11.25154 -10.84250 -10.64338 -10.57019 -8.19342 -6.30414 0.14446 1.21852 1.45094 1.46042 1.58744 1.87655 2.37848 2.45346 2.88974 3.00724 3.16134 3.44299 3.56338 3.76629 3.82252 4.03823 4.14060 4.14899 4.24132 4.26514 4.41584 4.54522 4.61007 4.65508 4.68401 4.79514 4.83438 4.89181 4.92020 4.99061 5.01937 5.06576 5.08487 5.11689 5.13793 5.24224 5.33954 5.38421 5.40505 5.55928 5.78257 6.14554 6.83846 7.16189 7.39185 8.93527 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030934 B = 0.003930 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.945469 B = 7122.599488 C = 7622.114624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.009 3.991 3 H 0.111 0.889 4 C 0.038 3.962 5 C -0.528 4.528 6 H 0.079 0.921 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.253 1.253 11 H -0.284 1.284 12 H -0.281 1.281 13 C 0.209 3.791 14 N -0.514 5.514 15 C 0.182 3.818 16 C 0.027 3.973 17 H 0.108 0.892 18 C -0.111 4.111 19 C -0.108 4.108 20 C -0.084 4.084 21 C -0.122 4.122 22 C -0.141 4.141 23 C -0.188 4.188 24 N -0.400 5.400 25 O 0.054 5.946 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.054 0.946 29 H -0.016 1.016 30 H 0.003 0.997 31 H 0.263 0.737 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.351 0.613 19.833 19.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.012 4.012 3 H 0.129 0.871 4 C 0.000 4.000 5 C -0.566 4.566 6 H 0.097 0.903 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.792 3.208 10 H -0.177 1.177 11 H -0.210 1.210 12 H -0.207 1.207 13 C -0.010 4.010 14 N -0.248 5.248 15 C -0.091 4.091 16 C 0.007 3.993 17 H 0.126 0.874 18 C -0.150 4.150 19 C -0.145 4.145 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.178 4.178 23 C -0.225 4.225 24 N -0.112 5.112 25 O 0.002 5.998 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.003 0.997 30 H 0.021 0.979 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.144 0.856 40 H 0.121 0.879 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.615 0.056 20.322 20.490 hybrid contribution -0.081 0.069 -1.787 1.790 sum 2.534 0.125 18.535 18.708 Atomic orbital electron populations 1.21725 0.90784 1.02761 1.03269 1.20128 0.98322 0.98221 0.84513 0.87109 1.19017 0.94353 0.95392 0.91235 1.21532 1.35204 1.09027 0.90809 0.90270 1.25973 0.94949 0.95951 1.02862 1.70129 1.39951 1.23033 1.24474 0.85362 0.77928 0.78999 0.78554 1.17678 1.21042 1.20710 1.29484 0.91977 0.82032 0.97536 1.71948 1.18375 1.30589 1.03893 1.26215 0.98814 0.84453 0.99650 1.19970 0.92294 1.01022 0.86059 0.87397 1.22455 0.97493 1.01337 0.93709 1.22446 0.97009 0.98621 0.96449 1.21911 1.01263 0.96250 0.92687 1.21802 0.94132 0.99565 0.96851 1.23124 0.93233 1.00003 1.01402 1.22776 1.05992 1.00530 0.93232 1.74520 1.14110 1.24181 0.98431 1.85270 1.54612 1.30283 1.29668 0.91286 0.89644 0.92686 0.99739 0.97856 0.92853 0.89272 0.92654 0.89560 0.89035 0.92099 0.89066 0.88935 0.85620 0.87925 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 8.98 71.98 0.65 -3.69 16 2 C 0.01 0.34 2.81 -11.54 -0.03 0.31 16 3 H 0.11 4.32 8.14 -2.39 -0.02 4.30 16 4 C 0.04 1.95 4.43 29.85 0.13 2.08 16 5 C -0.53 -28.04 8.41 25.60 0.22 -27.83 16 6 H 0.08 3.87 7.06 -2.91 -0.02 3.85 16 7 C 0.00 0.03 5.46 84.65 0.46 0.49 16 8 N -0.94 -56.16 13.29 21.45 0.28 -55.87 16 9 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 10 H -0.25 -10.35 7.11 99.48 0.71 -9.65 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 13 C 0.21 8.47 7.02 88.38 0.62 9.10 16 14 N -0.51 -20.02 11.55 -303.18 -3.50 -23.52 16 15 C 0.18 6.37 5.32 138.46 0.74 7.10 16 16 C 0.03 0.69 3.31 -10.91 -0.04 0.65 16 17 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 18 C -0.11 -2.28 6.36 31.72 0.20 -2.07 16 19 C -0.11 -1.57 6.91 31.93 0.22 -1.35 16 20 C -0.08 -1.49 6.58 31.57 0.21 -1.28 16 21 C -0.12 -2.87 2.26 -52.02 -0.12 -2.98 16 22 C -0.14 -3.00 10.23 30.48 0.31 -2.68 16 23 C -0.19 -5.33 9.61 30.47 0.29 -5.04 16 24 N -0.40 -15.36 11.89 -60.31 -0.72 -16.07 16 25 O 0.05 2.22 11.31 74.83 0.85 3.07 16 26 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.08 2.89 6.95 -2.38 -0.02 2.87 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.35 7.66 -2.38 -0.02 1.33 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.09 1.22 8.11 -2.39 -0.02 1.21 16 38 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.05 1.74 7.30 -2.39 -0.02 1.72 16 Total: -1.00 -65.33 337.81 3.81 -61.52 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 1.01 Total: 13.41 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 3.86 Total: -27.19 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -3.93 Total: -95.47 kcal Atomic # 8 Polarization: 2.22 SS G_CDS: 0.85 Total: 3.07 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -65.33 3.81 -61.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707087501.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.969 kcal (2) G-P(sol) polarization free energy of solvation -65.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds