Wall clock time and date at job start Thu Apr 9 2020 14:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.52997 * 109.47131 * 240.00371 * 2 1 3 5 5 C 1.50694 * 109.47460 * 64.99697 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 C 1.50693 * 109.47304 * 119.99881 * 2 1 3 14 14 N 1.31130 * 126.55145 * 239.71145 * 13 2 1 15 15 C 1.34497 * 105.61091 * 179.91605 * 14 13 2 16 16 C 1.50708 * 126.28655 * 180.12855 * 15 14 13 17 17 H 1.09002 * 110.05276 * 359.53656 * 16 15 14 18 18 C 1.54389 * 110.06779 * 238.05655 * 16 15 14 19 19 C 1.54923 * 104.21796 * 217.21590 * 18 16 15 20 20 C 1.54992 * 102.82539 * 37.72088 * 19 18 16 21 21 C 1.53481 * 110.07154 * 121.02465 * 16 15 14 22 22 C 1.52548 * 121.08879 * 335.14813 * 21 16 15 23 23 C 1.52567 * 121.04982 * 263.43117 * 21 16 15 24 24 N 1.29943 * 107.43077 * 0.35346 * 15 14 13 25 25 O 1.21307 * 110.24670 * 359.77329 * 24 15 14 26 26 H 1.09008 * 109.47372 * 300.00032 * 1 2 3 27 27 H 1.09003 * 109.47550 * 59.99782 * 1 2 3 28 28 H 1.08992 * 109.47274 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46800 * 305.00168 * 4 2 1 30 30 H 1.08998 * 109.47382 * 184.99967 * 4 2 1 31 31 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 32 32 H 1.08993 * 110.48095 * 335.89764 * 18 16 15 33 33 H 1.08999 * 110.48049 * 98.53513 * 18 16 15 34 34 H 1.09008 * 110.73889 * 156.05400 * 19 18 16 35 35 H 1.09004 * 110.74461 * 279.20207 * 19 18 16 36 36 H 1.08994 * 110.51342 * 81.06474 * 20 19 18 37 37 H 1.08995 * 110.51469 * 203.64556 * 20 19 18 38 38 H 1.09006 * 117.50962 * 357.02877 * 22 21 16 39 39 H 1.08993 * 117.51178 * 142.11306 * 22 21 16 40 40 H 1.08997 * 117.50830 * 217.93875 * 23 21 16 41 41 H 1.08997 * 117.51611 * 2.99315 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 2.6755 -1.5191 -3.8512 9 14 1.4975 0.5622 -5.2498 10 1 1.9926 -0.1377 -6.4622 11 1 0.0176 0.6687 -5.3087 12 1 2.0896 1.9227 -5.1876 13 6 2.0323 -0.7103 1.2304 14 7 2.7936 -0.2022 2.1694 15 6 2.9822 -1.1936 3.0585 16 6 3.7897 -1.1112 4.3283 17 1 4.2214 -0.1158 4.4329 18 6 4.9085 -2.1750 4.3146 19 6 4.9890 -2.6617 5.7832 20 6 3.5032 -2.6709 6.2244 21 6 2.9017 -1.4301 5.5388 22 6 1.3916 -1.2206 5.4849 23 6 2.2617 -0.3153 6.3607 24 7 2.3444 -2.2370 2.6191 25 8 1.7919 -1.9803 1.5701 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6053 -1.7197 -1.2952 30 1 3.1263 -0.7994 -1.2057 31 1 2.9221 -1.8424 -4.7319 32 1 4.6425 -2.9998 3.6535 33 1 5.8548 -1.7293 4.0081 34 1 5.4133 -3.6644 5.8348 35 1 5.5702 -1.9665 6.3890 36 1 3.0074 -3.5774 5.8775 37 1 3.4261 -2.5854 7.3083 38 1 0.9751 -0.7905 4.5740 39 1 0.7632 -1.9551 5.9885 40 1 2.2056 -0.4544 7.4403 41 1 2.4182 0.7102 6.0263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707087502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:24 Heat of formation + Delta-G solvation = 64.134938 kcal Electronic energy + Delta-G solvation = -21454.991503 eV Core-core repulsion = 18337.872923 eV Total energy + Delta-G solvation = -3117.118580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.06763 -39.51908 -35.85711 -35.11295 -34.25863 -32.55899 -30.98173 -28.94777 -27.13274 -25.96583 -24.60780 -23.29335 -22.55152 -22.50174 -21.00283 -20.02039 -18.30103 -17.48477 -16.86701 -16.53294 -15.71801 -15.44625 -14.79887 -14.57748 -14.43725 -13.64236 -13.40111 -13.16422 -12.71660 -12.61843 -12.09683 -11.93450 -11.91165 -11.60903 -11.45395 -11.27206 -11.19183 -10.99200 -10.91640 -10.83403 -10.81206 -10.54662 -10.49899 -10.37515 -10.14221 -9.91476 -9.76740 -9.26494 -9.11583 -8.44173 -6.08259 -4.12369 1.68121 2.66857 3.30128 3.35175 3.36409 3.41517 3.49946 4.05775 4.14148 4.39996 4.44214 4.63738 4.71091 4.76432 5.00341 5.05881 5.24783 5.28063 5.41560 5.50020 5.53614 5.66253 5.67980 5.71928 5.78526 5.82050 5.82646 5.85496 5.95794 6.00431 6.03507 6.09286 6.20073 6.30816 6.41663 6.57650 6.68822 6.83006 7.48442 7.56863 7.86945 8.23347 8.68004 8.91741 9.52008 11.03014 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035591 B = 0.003726 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.536431 B = 7512.313886 C = 7913.435762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 H 0.104 0.896 4 C 0.030 3.970 5 C -0.522 4.522 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.287 1.287 11 H -0.275 1.275 12 H -0.276 1.276 13 C 0.216 3.784 14 N -0.503 5.503 15 C 0.172 3.828 16 C 0.036 3.964 17 H 0.100 0.900 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.121 4.121 22 C -0.161 4.161 23 C -0.164 4.164 24 N -0.389 5.389 25 O 0.074 5.926 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.029 0.971 30 H 0.021 0.979 31 H 0.263 0.737 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -0.051 19.006 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.122 0.878 4 C -0.008 4.008 5 C -0.560 4.560 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.723 3.277 10 H -0.213 1.213 11 H -0.201 1.201 12 H -0.201 1.201 13 C -0.003 4.003 14 N -0.237 5.237 15 C -0.101 4.101 16 C 0.016 3.984 17 H 0.119 0.881 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.198 4.198 23 C -0.200 4.200 24 N -0.098 5.098 25 O 0.017 5.983 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.929 -0.629 19.486 19.518 hybrid contribution -0.259 0.536 -1.158 1.302 sum 0.670 -0.093 18.328 18.340 Atomic orbital electron populations 1.21774 0.93118 1.02492 1.01868 1.20325 0.96468 0.98828 0.86546 0.87764 1.19227 0.96812 0.96046 0.88742 1.21022 1.35960 1.08678 0.90363 0.92020 1.25000 0.94958 0.95023 0.99206 1.69960 1.38160 1.20955 1.23898 0.86601 0.78957 0.80038 0.82106 1.21293 1.20079 1.20143 1.29551 0.91532 0.81898 0.97316 1.71943 1.18301 1.29841 1.03584 1.25478 1.00048 0.85722 0.98890 1.19583 0.92492 1.01409 0.84938 0.88141 1.22451 0.97353 0.97899 0.97654 1.22445 0.96249 1.01349 0.95578 1.21883 0.95278 0.95978 0.99131 1.21668 0.94567 0.98372 0.97630 1.22850 0.92436 1.02705 1.01833 1.23034 1.03623 0.95708 0.97680 1.74535 1.13256 1.23822 0.98213 1.85292 1.54283 1.29958 1.28731 0.94164 0.89695 0.92344 0.95301 0.96048 0.92732 0.90689 0.90750 0.91089 0.91101 0.90905 0.91425 0.89453 0.88620 0.88539 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.98 37.16 0.33 -2.00 16 2 C 0.00 -0.02 2.81 -91.78 -0.26 -0.28 16 3 H 0.10 2.04 8.14 -51.93 -0.42 1.61 16 4 C 0.03 0.73 4.43 -27.89 -0.12 0.61 16 5 C -0.52 -13.74 8.41 -34.44 -0.29 -14.03 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 9 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.22 4.26 7.02 -13.06 -0.09 4.17 16 14 N -0.50 -9.67 11.55 -9.87 -0.11 -9.78 16 15 C 0.17 2.97 5.32 -156.37 -0.83 2.14 16 16 C 0.04 0.48 3.30 -90.79 -0.30 0.18 16 17 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 18 C -0.12 -1.37 6.36 -24.99 -0.16 -1.53 16 19 C -0.12 -1.10 6.91 -24.66 -0.17 -1.27 16 20 C -0.09 -0.84 6.59 -25.16 -0.17 -1.01 16 21 C -0.12 -1.41 2.26 -154.19 -0.35 -1.76 16 22 C -0.16 -1.97 9.60 -26.92 -0.26 -2.22 16 23 C -0.16 -1.67 10.24 -26.91 -0.28 -1.95 16 24 N -0.39 -7.24 11.90 30.90 0.37 -6.87 16 25 O 0.07 1.46 11.31 18.09 0.20 1.67 16 26 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.07 1.03 7.68 -51.93 -0.40 0.63 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 38 H 0.09 1.27 7.30 -51.93 -0.38 0.90 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 337.83 15.07 5.09 5.09 Total: -1.00 -29.19 337.83 -8.33 -37.52 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.56 Total: -0.76 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -3.03 Total: -17.39 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.99 Total: -41.87 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.20 Total: 1.67 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.19 -8.33 -37.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707087502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.652 kcal (2) G-P(sol) polarization free energy of solvation -29.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds