Wall clock time and date at job start Thu Apr 9 2020 14:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46866 * 2 1 4 4 C 1.52997 * 109.47131 * 240.00371 * 2 1 3 5 5 C 1.50694 * 109.47460 * 64.99697 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 C 1.50693 * 109.47304 * 119.99881 * 2 1 3 14 14 N 1.31130 * 126.55145 * 239.71145 * 13 2 1 15 15 C 1.34497 * 105.61091 * 179.91605 * 14 13 2 16 16 C 1.50708 * 126.28655 * 180.12855 * 15 14 13 17 17 H 1.09002 * 110.05276 * 359.53656 * 16 15 14 18 18 C 1.54389 * 110.06779 * 238.05655 * 16 15 14 19 19 C 1.54923 * 104.21796 * 217.21590 * 18 16 15 20 20 C 1.54992 * 102.82539 * 37.72088 * 19 18 16 21 21 C 1.53481 * 110.07154 * 121.02465 * 16 15 14 22 22 C 1.52548 * 121.08879 * 335.14813 * 21 16 15 23 23 C 1.52567 * 121.04982 * 263.43117 * 21 16 15 24 24 N 1.29943 * 107.43077 * 0.35346 * 15 14 13 25 25 O 1.21307 * 110.24670 * 359.77329 * 24 15 14 26 26 H 1.09008 * 109.47372 * 300.00032 * 1 2 3 27 27 H 1.09003 * 109.47550 * 59.99782 * 1 2 3 28 28 H 1.08992 * 109.47274 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46800 * 305.00168 * 4 2 1 30 30 H 1.08998 * 109.47382 * 184.99967 * 4 2 1 31 31 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 32 32 H 1.08993 * 110.48095 * 335.89764 * 18 16 15 33 33 H 1.08999 * 110.48049 * 98.53513 * 18 16 15 34 34 H 1.09008 * 110.73889 * 156.05400 * 19 18 16 35 35 H 1.09004 * 110.74461 * 279.20207 * 19 18 16 36 36 H 1.08994 * 110.51342 * 81.06474 * 20 19 18 37 37 H 1.08995 * 110.51469 * 203.64556 * 20 19 18 38 38 H 1.09006 * 117.50962 * 357.02877 * 22 21 16 39 39 H 1.08993 * 117.51178 * 142.11306 * 22 21 16 40 40 H 1.08997 * 117.50830 * 217.93875 * 23 21 16 41 41 H 1.08997 * 117.51611 * 2.99315 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9923 -0.4021 -3.7284 8 7 2.6755 -1.5191 -3.8512 9 14 1.4975 0.5622 -5.2498 10 1 1.9926 -0.1377 -6.4622 11 1 0.0176 0.6687 -5.3087 12 1 2.0896 1.9227 -5.1876 13 6 2.0323 -0.7103 1.2304 14 7 2.7936 -0.2022 2.1694 15 6 2.9822 -1.1936 3.0585 16 6 3.7897 -1.1112 4.3283 17 1 4.2214 -0.1158 4.4329 18 6 4.9085 -2.1750 4.3146 19 6 4.9890 -2.6617 5.7832 20 6 3.5032 -2.6709 6.2244 21 6 2.9017 -1.4301 5.5388 22 6 1.3916 -1.2206 5.4849 23 6 2.2617 -0.3153 6.3607 24 7 2.3444 -2.2370 2.6191 25 8 1.7919 -1.9803 1.5701 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.6053 -1.7197 -1.2952 30 1 3.1263 -0.7994 -1.2057 31 1 2.9221 -1.8424 -4.7319 32 1 4.6425 -2.9998 3.6535 33 1 5.8548 -1.7293 4.0081 34 1 5.4133 -3.6644 5.8348 35 1 5.5702 -1.9665 6.3890 36 1 3.0074 -3.5774 5.8775 37 1 3.4261 -2.5854 7.3083 38 1 0.9751 -0.7905 4.5740 39 1 0.7632 -1.9551 5.9885 40 1 2.2056 -0.4544 7.4403 41 1 2.4182 0.7102 6.0263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707087502.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:23 Heat of formation + Delta-G solvation = 47.692963 kcal Electronic energy + Delta-G solvation = -21455.704481 eV Core-core repulsion = 18337.872923 eV Total energy + Delta-G solvation = -3117.831557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -46.56171 -40.45019 -37.54292 -36.57164 -35.20379 -34.48349 -32.50756 -30.03148 -29.01549 -26.88061 -26.29512 -24.76422 -24.18481 -23.40428 -22.11393 -21.29177 -19.44281 -18.99421 -18.62477 -18.22900 -16.69526 -16.54095 -16.43241 -16.03657 -15.75895 -15.10641 -14.57227 -14.43707 -14.10544 -13.84977 -13.67152 -13.42008 -13.07983 -13.00018 -12.83674 -12.64303 -12.48335 -12.39920 -12.29064 -12.19652 -12.03731 -11.96163 -11.87618 -11.61785 -11.51031 -11.28414 -11.23868 -10.81480 -10.63145 -10.54619 -8.18507 -6.29704 0.14352 1.21784 1.46356 1.48852 1.56276 1.87709 2.38907 2.46438 2.90921 3.01251 3.16736 3.44790 3.57091 3.78304 3.82908 4.05661 4.14283 4.15495 4.22652 4.26308 4.41155 4.54371 4.63230 4.65638 4.70427 4.79216 4.83682 4.90474 4.93427 4.98525 5.01654 5.06063 5.08845 5.12358 5.15786 5.23680 5.33532 5.38921 5.39030 5.56259 5.78508 6.15190 6.83995 7.16206 7.39736 8.93910 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035591 B = 0.003726 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.536431 B = 7512.313886 C = 7913.435762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.009 3.991 3 H 0.111 0.889 4 C 0.038 3.962 5 C -0.531 4.531 6 H 0.079 0.921 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.967 3.033 10 H -0.290 1.290 11 H -0.262 1.262 12 H -0.266 1.266 13 C 0.209 3.791 14 N -0.514 5.514 15 C 0.182 3.818 16 C 0.028 3.972 17 H 0.107 0.893 18 C -0.117 4.117 19 C -0.109 4.109 20 C -0.082 4.082 21 C -0.128 4.128 22 C -0.179 4.179 23 C -0.140 4.140 24 N -0.399 5.399 25 O 0.054 5.946 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.054 0.946 29 H 0.003 0.997 30 H -0.014 1.014 31 H 0.263 0.737 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.427 1.236 20.815 20.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.012 4.012 3 H 0.129 0.871 4 C 0.000 4.000 5 C -0.568 4.568 6 H 0.097 0.903 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.791 3.209 10 H -0.216 1.216 11 H -0.186 1.186 12 H -0.191 1.191 13 C -0.010 4.010 14 N -0.248 5.248 15 C -0.092 4.092 16 C 0.008 3.992 17 H 0.125 0.875 18 C -0.156 4.156 19 C -0.146 4.146 20 C -0.120 4.120 21 C -0.129 4.129 22 C -0.216 4.216 23 C -0.177 4.177 24 N -0.112 5.112 25 O 0.002 5.998 26 H 0.086 0.914 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.022 0.978 30 H 0.004 0.996 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.123 0.877 40 H 0.142 0.858 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.714 0.666 21.289 21.312 hybrid contribution -0.158 0.122 -1.668 1.680 sum 0.556 0.789 19.621 19.645 Atomic orbital electron populations 1.21721 0.90875 1.02727 1.03197 1.20122 0.98244 0.98248 0.84544 0.87105 1.19012 0.94436 0.95385 0.91147 1.21472 1.35408 1.09099 0.90859 0.90327 1.25968 0.94918 0.95942 1.02832 1.70116 1.39837 1.22978 1.24600 0.85468 0.79209 0.78587 0.77618 1.21584 1.18618 1.19109 1.29483 0.91909 0.82049 0.97569 1.71952 1.18215 1.30618 1.04008 1.26214 0.98982 0.84614 0.99349 1.19934 0.92973 1.02407 0.83909 0.87506 1.22476 0.96942 0.96656 0.99488 1.22449 0.96270 1.02467 0.93408 1.21904 0.95221 0.94404 1.00424 1.21765 0.93745 1.00046 0.97331 1.22805 0.93037 1.04175 1.01589 1.23125 1.00782 0.94960 0.98796 1.74527 1.14124 1.24424 0.98129 1.85274 1.54984 1.30099 1.29458 0.91440 0.89624 0.92711 0.97822 0.99602 0.92831 0.93148 0.89950 0.89891 0.89041 0.92100 0.88880 0.92503 0.87668 0.85750 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 8.98 71.98 0.65 -3.70 16 2 C 0.01 0.35 2.81 -11.54 -0.03 0.32 16 3 H 0.11 4.31 8.14 -2.39 -0.02 4.29 16 4 C 0.04 1.95 4.43 29.85 0.13 2.09 16 5 C -0.53 -28.14 8.41 25.60 0.22 -27.92 16 6 H 0.08 3.82 7.06 -2.91 -0.02 3.80 16 7 C 0.00 0.08 5.46 84.66 0.46 0.54 16 8 N -0.94 -55.99 13.29 21.45 0.28 -55.71 16 9 Si 0.97 42.51 29.54 68.60 2.03 44.54 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 12 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 13 C 0.21 8.47 7.02 88.38 0.62 9.09 16 14 N -0.51 -20.00 11.55 -303.20 -3.50 -23.51 16 15 C 0.18 6.36 5.32 138.47 0.74 7.10 16 16 C 0.03 0.73 3.30 -10.90 -0.04 0.69 16 17 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 18 C -0.12 -2.68 6.36 31.72 0.20 -2.47 16 19 C -0.11 -1.71 6.91 31.93 0.22 -1.49 16 20 C -0.08 -1.41 6.59 31.61 0.21 -1.20 16 21 C -0.13 -2.75 2.26 -51.98 -0.12 -2.87 16 22 C -0.18 -4.19 9.60 30.47 0.29 -3.90 16 23 C -0.14 -2.49 10.24 30.48 0.31 -2.17 16 24 N -0.40 -15.33 11.90 -60.31 -0.72 -16.05 16 25 O 0.05 2.23 11.31 74.81 0.85 3.07 16 26 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 27 H 0.08 2.91 6.95 -2.39 -0.02 2.89 16 28 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 30 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 31 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 32 H 0.05 1.39 7.68 -2.39 -0.02 1.38 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.15 8.11 -2.39 -0.02 1.13 16 38 H 0.06 1.68 7.30 -2.38 -0.02 1.66 16 39 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -64.61 337.83 3.80 -60.80 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.01 Total: 12.75 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 3.86 Total: -25.90 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -3.94 Total: -95.26 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.85 Total: 3.07 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -64.61 3.80 -60.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707087502.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.494 kcal (2) G-P(sol) polarization free energy of solvation -64.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds