Wall clock time and date at job start Thu Apr 9 2020 14:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08998 * 109.46529 * 2 1 4 4 C 1.53000 * 109.46787 * 119.99639 * 2 1 3 5 5 C 1.50707 * 109.47365 * 295.00107 * 4 2 1 6 6 H 1.08001 * 119.99589 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00000 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00269 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00021 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.46939 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46990 * 119.99789 * 9 7 5 12 12 H 1.48491 * 109.47291 * 239.99813 * 9 7 5 13 13 C 1.50693 * 109.47197 * 239.99814 * 2 1 3 14 14 N 1.31132 * 126.55296 * 119.99975 * 13 2 1 15 15 C 1.34497 * 105.61619 * 180.02562 * 14 13 2 16 16 C 1.50699 * 126.28619 * 179.97438 * 15 14 13 17 17 H 1.08994 * 110.04995 * 358.51593 * 16 15 14 18 18 C 1.54869 * 110.09629 * 237.05421 * 16 15 14 19 19 C 1.54929 * 103.98854 * 217.19719 * 18 16 15 20 20 C 1.54990 * 102.98197 * 37.71411 * 19 18 16 21 21 C 1.53485 * 110.06826 * 120.00347 * 16 15 14 22 22 C 1.52564 * 121.05333 * 263.51115 * 21 16 15 23 23 C 1.52548 * 121.08287 * 335.22505 * 21 16 15 24 24 N 1.29951 * 107.41994 * 0.24483 * 15 14 13 25 25 O 1.21300 * 110.25537 * 359.57590 * 24 15 14 26 26 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46887 * 300.00021 * 1 2 3 28 28 H 1.09000 * 109.46754 * 60.00300 * 1 2 3 29 29 H 1.09000 * 109.47294 * 55.00339 * 4 2 1 30 30 H 1.09002 * 109.46969 * 175.00304 * 4 2 1 31 31 H 0.97000 * 119.99925 * 180.02562 * 8 7 5 32 32 H 1.09003 * 110.68004 * 98.54807 * 18 16 15 33 33 H 1.08995 * 110.50112 * 335.76335 * 18 16 15 34 34 H 1.09002 * 110.74557 * 279.28949 * 19 18 16 35 35 H 1.08999 * 110.73755 * 156.13445 * 19 18 16 36 36 H 1.09004 * 110.51042 * 80.97870 * 20 19 18 37 37 H 1.08994 * 110.50994 * 203.54958 * 20 19 18 38 38 H 1.08996 * 117.51272 * 217.93306 * 22 21 16 39 39 H 1.09004 * 117.51132 * 3.02945 * 22 21 16 40 40 H 1.08996 * 117.51247 * 357.03073 * 23 21 16 41 41 H 1.09008 * 117.50462 * 142.07835 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4767 6 1 1.0799 0.9743 2.3757 7 6 1.9931 -0.4015 3.7283 8 7 2.6763 -1.5186 3.8513 9 14 1.4995 0.5636 5.2496 10 1 0.7421 1.7745 4.8433 11 1 0.6457 -0.2852 6.1189 12 1 2.7178 0.9684 5.9959 13 6 2.0324 -0.7104 -1.2304 14 7 2.7893 -0.2008 -2.1721 15 6 2.9810 -1.1933 -3.0593 16 6 3.7874 -1.1105 -4.3297 17 1 4.1867 -0.1040 -4.4540 18 6 2.9044 -1.4849 -5.5457 19 6 3.8619 -2.2712 -6.4759 20 6 4.7217 -3.0893 -5.4791 21 6 4.9331 -2.1312 -4.2938 22 6 6.3377 -1.7226 -3.8606 23 6 5.4948 -2.6383 -2.9693 24 7 2.3385 -2.2350 -2.6226 25 8 1.7911 -1.9801 -1.5705 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -1.7197 1.2953 30 1 3.1264 -0.7994 1.2057 31 1 2.9235 -1.8414 4.7319 32 1 2.5378 -0.5884 -6.0458 33 1 2.0723 -2.1159 -5.2335 34 1 4.4852 -1.5891 -7.0541 35 1 3.3014 -2.9332 -7.1360 36 1 4.1869 -3.9829 -5.1573 37 1 5.6767 -3.3586 -5.9302 38 1 7.1783 -2.1705 -4.3905 39 1 6.4836 -0.6940 -3.5305 40 1 5.0863 -2.2122 -2.0530 41 1 5.7805 -3.6888 -2.9128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707087503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:25 Heat of formation + Delta-G solvation = 47.452636 kcal Electronic energy + Delta-G solvation = -21504.741724 eV Core-core repulsion = 18386.899745 eV Total energy + Delta-G solvation = -3117.841979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.55987 -40.45265 -37.54314 -36.57607 -35.19969 -34.48708 -32.50565 -30.01589 -29.01759 -26.88972 -26.29734 -24.76330 -24.19382 -23.44851 -22.09383 -21.29977 -19.45161 -18.99767 -18.63200 -18.22946 -16.67155 -16.54060 -16.43317 -16.07266 -15.76916 -15.10672 -14.57398 -14.44484 -14.10473 -13.87082 -13.65319 -13.42854 -13.10951 -12.95182 -12.81695 -12.70553 -12.51617 -12.45415 -12.23813 -12.13475 -12.11308 -11.97870 -11.82074 -11.59657 -11.51716 -11.26418 -11.25129 -10.84110 -10.64406 -10.57026 -8.19304 -6.30392 0.14447 1.21819 1.45120 1.46066 1.58773 1.87709 2.37927 2.45388 2.88988 3.00762 3.16187 3.44325 3.55709 3.76710 3.82357 4.03928 4.13960 4.14644 4.24270 4.26508 4.41449 4.54263 4.61024 4.65457 4.68490 4.79485 4.83493 4.89182 4.92053 4.99070 5.01990 5.06519 5.08404 5.11546 5.13865 5.24123 5.33912 5.38412 5.40443 5.55935 5.78253 6.14562 6.83846 7.16205 7.39234 8.93540 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.030933 B = 0.003929 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.961541 B = 7124.178205 C = 7623.732260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.008 3.992 3 H 0.111 0.889 4 C 0.038 3.962 5 C -0.528 4.528 6 H 0.079 0.921 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.253 1.253 11 H -0.281 1.281 12 H -0.284 1.284 13 C 0.209 3.791 14 N -0.514 5.514 15 C 0.182 3.818 16 C 0.026 3.974 17 H 0.108 0.892 18 C -0.111 4.111 19 C -0.109 4.109 20 C -0.084 4.084 21 C -0.122 4.122 22 C -0.141 4.141 23 C -0.188 4.188 24 N -0.400 5.400 25 O 0.053 5.947 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.003 0.997 30 H -0.016 1.016 31 H 0.263 0.737 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.126 0.874 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 0.610 -19.833 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.012 4.012 3 H 0.129 0.871 4 C 0.000 4.000 5 C -0.566 4.566 6 H 0.097 0.903 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.177 1.177 11 H -0.207 1.207 12 H -0.210 1.210 13 C -0.010 4.010 14 N -0.248 5.248 15 C -0.091 4.091 16 C 0.006 3.994 17 H 0.126 0.874 18 C -0.150 4.150 19 C -0.146 4.146 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.178 4.178 23 C -0.225 4.225 24 N -0.112 5.112 25 O 0.002 5.998 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.021 0.979 30 H 0.003 0.997 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.144 0.856 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.615 0.055 -20.327 20.495 hybrid contribution -0.079 0.069 1.786 1.789 sum 2.537 0.124 -18.541 18.714 Atomic orbital electron populations 1.21727 0.90783 1.02756 1.03264 1.20128 0.98321 0.98223 0.84520 0.87111 1.19018 0.94354 0.95396 0.91234 1.21532 1.35187 1.09043 0.90812 0.90272 1.25970 0.94942 0.95955 1.02859 1.70129 1.39952 1.23031 1.24469 0.85362 0.77930 0.78999 0.78559 1.17681 1.20712 1.21041 1.29484 0.92062 0.81914 0.97568 1.71950 1.18253 1.30596 1.04008 1.26214 0.98662 0.84577 0.99665 1.20053 0.92281 1.01011 0.86042 0.87411 1.22540 0.97440 1.01329 0.93647 1.22451 0.97000 0.98642 0.96485 1.21906 1.01265 0.96253 0.92668 1.21787 0.94118 0.99574 0.96847 1.23123 0.93241 0.99990 1.01400 1.22777 1.05991 1.00530 0.93233 1.74520 1.14244 1.24326 0.98160 1.85271 1.55193 1.30136 1.29239 0.92691 0.89638 0.91297 0.97851 0.99737 0.92853 0.89227 0.92656 0.89063 0.89567 0.92095 0.89055 0.85614 0.88939 0.93446 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 8.99 71.99 0.65 -3.68 16 2 C 0.01 0.34 2.81 -11.54 -0.03 0.31 16 3 H 0.11 4.32 8.14 -2.39 -0.02 4.30 16 4 C 0.04 1.95 4.43 29.85 0.13 2.08 16 5 C -0.53 -28.04 8.41 25.60 0.22 -27.83 16 6 H 0.08 3.87 7.06 -2.91 -0.02 3.85 16 7 C 0.00 0.03 5.46 84.65 0.46 0.50 16 8 N -0.94 -56.15 13.29 21.45 0.28 -55.86 16 9 Si 0.97 42.64 29.54 68.60 2.03 44.66 16 10 H -0.25 -10.36 7.11 99.48 0.71 -9.65 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 13 C 0.21 8.48 7.02 88.38 0.62 9.10 16 14 N -0.51 -20.03 11.55 -303.16 -3.50 -23.53 16 15 C 0.18 6.37 5.32 138.46 0.74 7.11 16 16 C 0.03 0.68 3.31 -10.74 -0.04 0.64 16 17 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 18 C -0.11 -2.27 6.40 31.89 0.20 -2.06 16 19 C -0.11 -1.58 6.89 31.93 0.22 -1.36 16 20 C -0.08 -1.49 6.58 31.57 0.21 -1.28 16 21 C -0.12 -2.86 2.26 -52.02 -0.12 -2.98 16 22 C -0.14 -2.99 10.24 30.48 0.31 -2.68 16 23 C -0.19 -5.33 9.62 30.47 0.29 -5.03 16 24 N -0.40 -15.36 11.90 -60.29 -0.72 -16.07 16 25 O 0.05 2.22 11.31 74.82 0.85 3.06 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.08 2.89 6.95 -2.39 -0.02 2.88 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 29 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 30 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 31 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.34 7.67 -2.39 -0.02 1.32 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.22 8.11 -2.39 -0.02 1.21 16 38 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.05 1.73 7.30 -2.39 -0.02 1.72 16 41 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 Total: -1.00 -65.32 337.87 3.81 -61.51 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.01 Total: 13.40 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 3.87 Total: -27.17 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -3.93 Total: -95.47 kcal Atomic # 8 Polarization: 2.22 SS G_CDS: 0.85 Total: 3.06 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -65.32 3.81 -61.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707087503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.967 kcal (2) G-P(sol) polarization free energy of solvation -65.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds