Wall clock time and date at job start Thu Apr 9 2020 14:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47810 * 2 1 4 4 C 1.53005 * 109.47086 * 119.99889 * 2 1 3 5 5 C 1.50701 * 109.47042 * 295.00145 * 4 2 1 6 6 H 1.07997 * 119.99884 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99750 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00662 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99817 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47136 * 89.99865 * 9 7 5 11 11 H 1.48500 * 109.47202 * 209.99856 * 9 7 5 12 12 H 1.48503 * 109.46779 * 329.99383 * 9 7 5 13 13 C 1.50697 * 109.47238 * 239.99579 * 2 1 3 14 14 N 1.31129 * 126.55584 * 120.30380 * 13 2 1 15 15 C 1.34494 * 105.62202 * 180.12628 * 14 13 2 16 16 C 1.50696 * 126.29263 * 179.90238 * 15 14 13 17 17 H 1.09003 * 110.09411 * 359.65338 * 16 15 14 18 18 C 1.54384 * 110.06935 * 121.16367 * 16 15 14 19 19 C 1.54925 * 104.33727 * 142.85885 * 18 16 15 20 20 C 1.54993 * 102.81741 * 322.20944 * 19 18 16 21 21 C 1.53816 * 110.18213 * 237.99819 * 16 15 14 22 22 C 1.52554 * 121.06938 * 24.89218 * 21 16 15 23 23 C 1.52566 * 121.01213 * 96.58256 * 21 16 15 24 24 N 1.29953 * 107.41778 * 359.64028 * 15 14 13 25 25 O 1.21293 * 110.25237 * 0.22597 * 24 15 14 26 26 H 1.08997 * 109.47430 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46995 * 300.00549 * 1 2 3 28 28 H 1.09002 * 109.46788 * 59.99822 * 1 2 3 29 29 H 1.09002 * 109.46637 * 54.99727 * 4 2 1 30 30 H 1.09002 * 109.47239 * 174.99592 * 4 2 1 31 31 H 0.96992 * 120.00667 * 180.02562 * 8 7 5 32 32 H 1.09002 * 110.48210 * 24.10719 * 18 16 15 33 33 H 1.08998 * 110.48213 * 261.60462 * 18 16 15 34 34 H 1.08998 * 110.74236 * 80.54245 * 19 18 16 35 35 H 1.08997 * 110.74194 * 203.70098 * 19 18 16 36 36 H 1.09000 * 110.51088 * 156.21610 * 20 19 18 37 37 H 1.08997 * 110.51332 * 278.79340 * 20 19 18 38 38 H 1.09001 * 117.50595 * 217.84108 * 22 21 16 39 39 H 1.08999 * 117.50768 * 2.92550 * 22 21 16 40 40 H 1.09007 * 117.51292 * 356.97423 * 23 21 16 41 41 H 1.09002 * 117.51581 * 142.06732 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8513 9 14 1.4995 0.5635 5.2496 10 1 0.1724 0.0954 5.7238 11 1 2.5092 0.3537 6.3181 12 1 1.4247 2.0087 4.9162 13 6 2.0323 -0.7105 -1.2304 14 7 2.7937 -0.2026 -2.1694 15 6 2.9815 -1.1937 -3.0589 16 6 3.7894 -1.1116 -4.3284 17 1 4.2107 -0.1125 -4.4403 18 6 4.9191 -2.1635 -4.3064 19 6 5.0097 -2.6598 -5.7712 20 6 3.5255 -2.6900 -6.2165 21 6 2.9075 -1.4529 -5.5416 22 6 1.3947 -1.2623 -5.4937 23 6 2.2559 -0.3529 -6.3740 24 7 2.3430 -2.2368 -2.6197 25 8 1.7911 -1.9802 -1.5705 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6052 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 2.9236 -1.8416 4.7318 32 1 4.6610 -2.9866 -3.6401 33 1 5.8599 -1.7064 -3.9998 34 1 5.5816 -1.9605 -6.3811 35 1 5.4490 -3.6565 -5.8147 36 1 3.4504 -2.6108 -7.3010 37 1 3.0401 -3.6010 -5.8665 38 1 0.7772 -2.0087 -5.9934 39 1 0.9701 -0.8305 -4.5874 40 1 2.3977 0.6772 -6.0468 41 1 2.2048 -0.5010 -7.4527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707087504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:27 Heat of formation + Delta-G solvation = 64.095136 kcal Electronic energy + Delta-G solvation = -21450.945008 eV Core-core repulsion = 18333.824702 eV Total energy + Delta-G solvation = -3117.120306 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.06979 -39.50585 -35.85834 -35.11786 -34.25359 -32.56033 -30.98303 -28.95047 -27.13409 -25.95854 -24.60884 -23.29282 -22.55261 -22.50016 -21.00240 -20.02093 -18.30383 -17.48624 -16.86672 -16.53586 -15.71678 -15.44445 -14.79878 -14.57318 -14.43985 -13.64603 -13.40195 -13.15920 -12.71244 -12.61922 -12.10026 -11.93961 -11.91508 -11.61349 -11.45488 -11.27351 -11.19094 -10.98451 -10.92160 -10.83803 -10.81242 -10.54044 -10.49818 -10.37192 -10.14636 -9.91489 -9.76801 -9.25355 -9.11572 -8.44653 -6.08473 -4.12561 1.68043 2.66649 3.28688 3.35362 3.37702 3.41578 3.50036 4.05837 4.13927 4.39876 4.44277 4.63673 4.70861 4.76343 5.00417 5.05715 5.24697 5.27941 5.41537 5.49911 5.53344 5.66292 5.67945 5.71962 5.78470 5.82160 5.82698 5.85516 5.95754 6.00418 6.03439 6.09187 6.19978 6.30754 6.41645 6.57582 6.68743 6.82899 7.48504 7.56726 7.86905 8.23170 8.67997 8.91824 9.51952 11.02839 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035570 B = 0.003724 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.989878 B = 7517.377788 C = 7918.762724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 H 0.104 0.896 4 C 0.029 3.971 5 C -0.521 4.521 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.216 3.784 14 N -0.503 5.503 15 C 0.172 3.828 16 C 0.036 3.964 17 H 0.101 0.899 18 C -0.115 4.115 19 C -0.119 4.119 20 C -0.085 4.085 21 C -0.121 4.121 22 C -0.161 4.161 23 C -0.164 4.164 24 N -0.388 5.388 25 O 0.074 5.926 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.029 0.971 30 H 0.021 0.979 31 H 0.262 0.738 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 -0.067 -19.016 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.122 0.878 4 C -0.009 4.009 5 C -0.559 4.559 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.197 1.197 13 C -0.003 4.003 14 N -0.237 5.237 15 C -0.101 4.101 16 C 0.016 3.984 17 H 0.119 0.881 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.198 4.198 23 C -0.201 4.201 24 N -0.098 5.098 25 O 0.017 5.983 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.114 0.886 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.942 -0.637 -19.498 19.532 hybrid contribution -0.258 0.520 1.164 1.300 sum 0.684 -0.117 -18.335 18.348 Atomic orbital electron populations 1.21774 0.93119 1.02495 1.01872 1.20327 0.96469 0.98826 0.86542 0.87761 1.19237 0.96821 0.96053 0.88760 1.21059 1.35861 1.08663 0.90350 0.91963 1.25000 0.94944 0.95042 0.99216 1.69963 1.38199 1.21029 1.23789 0.86548 0.78284 0.80362 0.82565 1.20548 1.21230 1.19725 1.29554 0.91527 0.81903 0.97320 1.71936 1.18309 1.29845 1.03576 1.25470 1.00051 0.85728 0.98893 1.19631 0.92445 1.01396 0.84945 0.88120 1.22447 0.97262 0.97983 0.97681 1.22442 0.96256 1.01323 0.95581 1.21860 0.95211 0.96023 0.99179 1.21715 0.94446 0.98458 0.97591 1.22850 0.92492 1.02644 1.01832 1.23039 1.03646 0.95816 0.97578 1.74535 1.13260 1.23816 0.98194 1.85288 1.54283 1.29978 1.28707 0.92338 0.89697 0.94155 0.95297 0.96038 0.92786 0.90722 0.90767 0.91122 0.91066 0.91430 0.90897 0.88620 0.89454 0.88615 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.98 37.15 0.33 -2.00 16 2 C 0.00 -0.02 2.81 -91.77 -0.26 -0.28 16 3 H 0.10 2.04 8.14 -51.93 -0.42 1.61 16 4 C 0.03 0.72 4.43 -27.88 -0.12 0.59 16 5 C -0.52 -13.71 8.41 -34.44 -0.29 -14.00 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 9 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.22 4.26 7.02 -13.06 -0.09 4.16 16 14 N -0.50 -9.67 11.55 -9.87 -0.11 -9.78 16 15 C 0.17 2.97 5.34 -156.37 -0.84 2.14 16 16 C 0.04 0.48 3.32 -90.62 -0.30 0.18 16 17 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 18 C -0.12 -1.37 6.35 -24.99 -0.16 -1.53 16 19 C -0.12 -1.09 6.91 -24.66 -0.17 -1.27 16 20 C -0.09 -0.84 6.58 -25.22 -0.17 -1.01 16 21 C -0.12 -1.41 2.26 -154.08 -0.35 -1.76 16 22 C -0.16 -1.96 9.59 -26.91 -0.26 -2.22 16 23 C -0.16 -1.67 10.23 -26.91 -0.28 -1.95 16 24 N -0.39 -7.23 11.90 30.90 0.37 -6.87 16 25 O 0.07 1.46 11.31 18.10 0.20 1.67 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.07 1.03 7.70 -51.93 -0.40 0.63 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.27 7.31 -51.93 -0.38 0.89 16 40 H 0.10 0.99 8.14 -51.92 -0.42 0.56 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 337.88 15.07 5.09 5.09 Total: -1.00 -29.21 337.88 -8.34 -37.55 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.56 Total: -0.81 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -3.04 Total: -17.38 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.99 Total: -41.86 kcal Atomic # 8 Polarization: 1.46 SS G_CDS: 0.20 Total: 1.67 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.21 -8.34 -37.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707087504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.643 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds