Wall clock time and date at job start Thu Apr 9 2020 14:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47810 * 2 1 4 4 C 1.53005 * 109.47086 * 119.99889 * 2 1 3 5 5 C 1.50701 * 109.47042 * 295.00145 * 4 2 1 6 6 H 1.07997 * 119.99884 * 359.97438 * 5 4 2 7 7 C 1.37872 * 119.99750 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00662 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99817 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47136 * 89.99865 * 9 7 5 11 11 H 1.48500 * 109.47202 * 209.99856 * 9 7 5 12 12 H 1.48503 * 109.46779 * 329.99383 * 9 7 5 13 13 C 1.50697 * 109.47238 * 239.99579 * 2 1 3 14 14 N 1.31129 * 126.55584 * 120.30380 * 13 2 1 15 15 C 1.34494 * 105.62202 * 180.12628 * 14 13 2 16 16 C 1.50696 * 126.29263 * 179.90238 * 15 14 13 17 17 H 1.09003 * 110.09411 * 359.65338 * 16 15 14 18 18 C 1.54384 * 110.06935 * 121.16367 * 16 15 14 19 19 C 1.54925 * 104.33727 * 142.85885 * 18 16 15 20 20 C 1.54993 * 102.81741 * 322.20944 * 19 18 16 21 21 C 1.53816 * 110.18213 * 237.99819 * 16 15 14 22 22 C 1.52554 * 121.06938 * 24.89218 * 21 16 15 23 23 C 1.52566 * 121.01213 * 96.58256 * 21 16 15 24 24 N 1.29953 * 107.41778 * 359.64028 * 15 14 13 25 25 O 1.21293 * 110.25237 * 0.22597 * 24 15 14 26 26 H 1.08997 * 109.47430 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46995 * 300.00549 * 1 2 3 28 28 H 1.09002 * 109.46788 * 59.99822 * 1 2 3 29 29 H 1.09002 * 109.46637 * 54.99727 * 4 2 1 30 30 H 1.09002 * 109.47239 * 174.99592 * 4 2 1 31 31 H 0.96992 * 120.00667 * 180.02562 * 8 7 5 32 32 H 1.09002 * 110.48210 * 24.10719 * 18 16 15 33 33 H 1.08998 * 110.48213 * 261.60462 * 18 16 15 34 34 H 1.08998 * 110.74236 * 80.54245 * 19 18 16 35 35 H 1.08997 * 110.74194 * 203.70098 * 19 18 16 36 36 H 1.09000 * 110.51088 * 156.21610 * 20 19 18 37 37 H 1.08997 * 110.51332 * 278.79340 * 20 19 18 38 38 H 1.09001 * 117.50595 * 217.84108 * 22 21 16 39 39 H 1.08999 * 117.50768 * 2.92550 * 22 21 16 40 40 H 1.09007 * 117.51292 * 356.97423 * 23 21 16 41 41 H 1.09002 * 117.51581 * 142.06732 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8513 9 14 1.4995 0.5635 5.2496 10 1 0.1724 0.0954 5.7238 11 1 2.5092 0.3537 6.3181 12 1 1.4247 2.0087 4.9162 13 6 2.0323 -0.7105 -1.2304 14 7 2.7937 -0.2026 -2.1694 15 6 2.9815 -1.1937 -3.0589 16 6 3.7894 -1.1116 -4.3284 17 1 4.2107 -0.1125 -4.4403 18 6 4.9191 -2.1635 -4.3064 19 6 5.0097 -2.6598 -5.7712 20 6 3.5255 -2.6900 -6.2165 21 6 2.9075 -1.4529 -5.5416 22 6 1.3947 -1.2623 -5.4937 23 6 2.2559 -0.3529 -6.3740 24 7 2.3430 -2.2368 -2.6197 25 8 1.7911 -1.9802 -1.5705 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6052 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 2.9236 -1.8416 4.7318 32 1 4.6610 -2.9866 -3.6401 33 1 5.8599 -1.7064 -3.9998 34 1 5.5816 -1.9605 -6.3811 35 1 5.4490 -3.6565 -5.8147 36 1 3.4504 -2.6108 -7.3010 37 1 3.0401 -3.6010 -5.8665 38 1 0.7772 -2.0087 -5.9934 39 1 0.9701 -0.8305 -4.5874 40 1 2.3977 0.6772 -6.0468 41 1 2.2048 -0.5010 -7.4527 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707087504.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:27 Heat of formation + Delta-G solvation = 47.643094 kcal Electronic energy + Delta-G solvation = -21451.658422 eV Core-core repulsion = 18333.824702 eV Total energy + Delta-G solvation = -3117.833720 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.56342 -40.43590 -37.54302 -36.57598 -35.19909 -34.48419 -32.50842 -30.03396 -29.01619 -26.87398 -26.29550 -24.76394 -24.18412 -23.40151 -22.11477 -21.29058 -19.44432 -18.99566 -18.62744 -18.22918 -16.69416 -16.53796 -16.43070 -16.03628 -15.75758 -15.10574 -14.57551 -14.43948 -14.10159 -13.85561 -13.66813 -13.41949 -13.08893 -13.00365 -12.80479 -12.67975 -12.48664 -12.40143 -12.27109 -12.20429 -12.03547 -11.96049 -11.87431 -11.61798 -11.50903 -11.26838 -11.23590 -10.81443 -10.63155 -10.55436 -8.18694 -6.29832 0.14355 1.21627 1.46315 1.46998 1.57886 1.87700 2.38979 2.46391 2.90886 3.01276 3.16659 3.44626 3.57241 3.78343 3.82572 4.05672 4.14346 4.15635 4.22480 4.26374 4.41035 4.54353 4.63273 4.65740 4.70282 4.79359 4.83705 4.90519 4.93460 4.98633 5.01694 5.06132 5.08876 5.12242 5.15821 5.23771 5.33625 5.38946 5.39055 5.56267 5.78618 6.15115 6.84145 7.16256 7.39709 8.93943 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.035570 B = 0.003724 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.989878 B = 7517.377788 C = 7918.762724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.009 3.991 3 H 0.111 0.889 4 C 0.038 3.962 5 C -0.529 4.529 6 H 0.079 0.921 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.258 1.258 13 C 0.209 3.791 14 N -0.514 5.514 15 C 0.181 3.819 16 C 0.028 3.972 17 H 0.107 0.893 18 C -0.117 4.117 19 C -0.108 4.108 20 C -0.082 4.082 21 C -0.127 4.127 22 C -0.179 4.179 23 C -0.140 4.140 24 N -0.399 5.399 25 O 0.054 5.946 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.003 0.997 30 H -0.014 1.014 31 H 0.263 0.737 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.105 0.895 39 H 0.056 0.944 40 H 0.094 0.906 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.449 1.220 -20.828 20.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.012 4.012 3 H 0.129 0.871 4 C 0.000 4.000 5 C -0.567 4.567 6 H 0.097 0.903 7 C -0.197 4.197 8 N -0.576 5.576 9 Si 0.791 3.209 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.182 1.182 13 C -0.010 4.010 14 N -0.248 5.248 15 C -0.092 4.092 16 C 0.008 3.992 17 H 0.125 0.875 18 C -0.156 4.156 19 C -0.146 4.146 20 C -0.120 4.120 21 C -0.129 4.129 22 C -0.216 4.216 23 C -0.177 4.177 24 N -0.112 5.112 25 O 0.002 5.998 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.022 0.978 30 H 0.004 0.996 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.738 0.656 -21.305 21.328 hybrid contribution -0.162 0.106 1.675 1.686 sum 0.576 0.762 -19.630 19.653 Atomic orbital electron populations 1.21722 0.90869 1.02734 1.03209 1.20125 0.98251 0.98241 0.84540 0.87109 1.19021 0.94449 0.95392 0.91159 1.21499 1.35290 1.09065 0.90844 0.90320 1.25965 0.94912 0.95967 1.02835 1.70115 1.39870 1.23038 1.24541 0.85416 0.77879 0.79433 0.78149 1.19696 1.21518 1.18179 1.29487 0.91904 0.82054 0.97574 1.71945 1.18224 1.30623 1.04001 1.26205 0.98986 0.84621 0.99354 1.19981 0.92929 1.02396 0.83929 0.87471 1.22473 0.96836 0.96769 0.99493 1.22446 0.96279 1.02427 0.93425 1.21881 0.95142 0.94458 1.00483 1.21811 0.93648 1.00105 0.97288 1.22806 0.93073 1.04100 1.01622 1.23130 1.00796 0.95086 0.98681 1.74527 1.14124 1.24419 0.98110 1.85270 1.54982 1.30118 1.29432 0.92701 0.89608 0.91436 0.97816 0.99583 0.92832 0.93191 0.89981 0.89065 0.89866 0.88885 0.92086 0.87672 0.92495 0.88757 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 8.98 71.98 0.65 -3.69 16 2 C 0.01 0.35 2.81 -11.54 -0.03 0.32 16 3 H 0.11 4.31 8.14 -2.39 -0.02 4.29 16 4 C 0.04 1.93 4.43 29.85 0.13 2.06 16 5 C -0.53 -28.05 8.41 25.60 0.22 -27.83 16 6 H 0.08 3.83 7.06 -2.91 -0.02 3.81 16 7 C 0.00 0.06 5.46 84.65 0.46 0.52 16 8 N -0.94 -55.99 13.29 21.45 0.28 -55.70 16 9 Si 0.97 42.53 29.54 68.60 2.03 44.55 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 13 C 0.21 8.46 7.02 88.38 0.62 9.08 16 14 N -0.51 -20.00 11.55 -303.19 -3.50 -23.50 16 15 C 0.18 6.36 5.34 138.46 0.74 7.10 16 16 C 0.03 0.72 3.32 -10.80 -0.04 0.69 16 17 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 18 C -0.12 -2.68 6.35 31.72 0.20 -2.48 16 19 C -0.11 -1.71 6.91 31.93 0.22 -1.49 16 20 C -0.08 -1.41 6.58 31.57 0.21 -1.20 16 21 C -0.13 -2.74 2.26 -51.90 -0.12 -2.86 16 22 C -0.18 -4.18 9.59 30.48 0.29 -3.89 16 23 C -0.14 -2.49 10.23 30.48 0.31 -2.18 16 24 N -0.40 -15.32 11.90 -60.31 -0.72 -16.04 16 25 O 0.05 2.23 11.31 74.82 0.85 3.08 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.09 2.90 6.95 -2.38 -0.02 2.89 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 30 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 31 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.05 1.38 7.70 -2.39 -0.02 1.37 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.15 8.11 -2.39 -0.02 1.13 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.06 1.68 7.31 -2.39 -0.02 1.66 16 40 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -64.63 337.88 3.81 -60.82 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.01 Total: 12.63 kcal Atomic # 6 Polarization: -29.71 SS G_CDS: 3.86 Total: -25.85 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -3.93 Total: -95.24 kcal Atomic # 8 Polarization: 2.23 SS G_CDS: 0.85 Total: 3.08 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -64.63 3.81 -60.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707087504.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.466 kcal (2) G-P(sol) polarization free energy of solvation -64.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds