Wall clock time and date at job start Thu Apr 9 2020 14:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99688 * 2 1 4 4 H 1.08991 * 112.91227 * 18.75113 * 3 2 1 5 5 C 1.53786 * 113.61143 * 150.00280 * 3 2 1 6 6 C 1.53784 * 87.08175 * 139.98006 * 5 3 2 7 7 H 1.09004 * 113.61015 * 89.19716 * 6 5 3 8 8 C 1.52999 * 113.61271 * 220.01690 * 6 5 3 9 9 N 1.46494 * 109.47198 * 184.99901 * 8 6 5 10 10 C 1.39846 * 120.00370 * 179.97438 * 9 8 6 11 11 C 1.39603 * 119.83942 * 0.02562 * 10 9 8 12 12 C 1.38052 * 120.55414 * 179.97438 * 11 10 9 13 13 C 1.38738 * 120.21934 * 0.02562 * 12 11 10 14 14 N 1.38862 * 120.16426 * 180.02562 * 13 12 11 15 15 C 1.41558 * 119.67368 * 0.02562 * 13 12 11 16 16 C 1.41033 * 120.27018 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99642 * 329.57389 * 16 15 13 18 18 C 1.39882 * 120.00162 * 149.57735 * 16 15 13 19 19 N 1.30905 * 119.99659 * 162.17608 * 18 16 15 20 20 Si 1.86801 * 120.00185 * 342.18065 * 18 16 15 21 21 H 1.48497 * 109.47070 * 95.38178 * 20 18 16 22 22 H 1.48500 * 109.46856 * 215.38583 * 20 18 16 23 23 H 1.48496 * 109.46700 * 335.38517 * 20 18 16 24 24 C 1.38011 * 119.84434 * 179.97438 * 10 9 8 25 25 C 1.53779 * 113.61349 * 247.49519 * 3 2 1 26 26 H 1.08997 * 109.47406 * 300.00265 * 1 2 3 27 27 H 1.09000 * 109.47227 * 60.00144 * 1 2 3 28 28 H 1.09004 * 109.47284 * 179.97438 * 1 2 3 29 29 H 1.08997 * 113.61690 * 25.42296 * 5 3 2 30 30 H 1.09004 * 113.68905 * 254.53874 * 5 3 2 31 31 H 1.09003 * 109.47278 * 64.99656 * 8 6 5 32 32 H 1.09007 * 109.46783 * 305.00038 * 8 6 5 33 33 H 0.97006 * 119.99871 * 0.02562 * 9 8 6 34 34 H 1.08005 * 119.72377 * 359.97348 * 11 10 9 35 35 H 1.08003 * 119.89207 * 179.74093 * 12 11 10 36 36 H 0.97002 * 120.00156 * 359.97438 * 14 13 12 37 37 H 0.97001 * 120.00326 * 179.97438 * 14 13 12 38 38 H 0.97005 * 119.99212 * 179.97438 * 19 18 16 39 39 H 1.08003 * 120.10819 * 0.04667 * 24 10 9 40 40 H 1.08998 * 113.61507 * 105.47163 * 25 3 2 41 41 H 1.08998 * 113.61664 * 334.57156 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3142 2.0798 0.3227 5 6 3.3755 1.3719 0.7045 6 6 3.8227 2.3182 -0.4222 7 1 3.6234 3.3695 -0.2142 8 6 5.2543 2.0681 -0.9007 9 7 5.6260 3.0887 -1.8836 10 6 6.8969 3.0679 -2.4668 11 6 7.8086 2.0726 -2.1102 12 6 9.0669 2.0377 -2.6771 13 6 9.4394 2.9950 -3.6096 14 7 10.7052 2.9585 -4.1794 15 6 8.5228 4.0092 -3.9773 16 6 8.8881 4.9883 -4.9243 17 1 9.9195 5.2963 -5.0121 18 6 7.9146 5.5605 -5.7499 19 7 8.1615 6.6871 -6.3692 20 14 6.2622 4.7172 -5.9685 21 1 5.2800 5.2992 -5.0189 22 1 5.7843 4.9180 -7.3600 23 1 6.4088 3.2640 -5.7002 24 6 7.2435 4.0307 -3.3928 25 6 2.7534 1.6489 -1.3017 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.9088 0.4213 0.7139 30 1 3.3398 1.8467 1.6850 31 1 5.3167 1.0815 -1.3599 32 1 5.9351 2.1170 -0.0508 33 1 4.9908 3.7794 -2.1294 34 1 7.5271 1.3236 -1.3847 35 1 9.7652 1.2653 -2.3903 36 1 11.3316 2.2628 -3.9255 37 1 10.9631 3.6288 -4.8315 38 1 7.4865 7.0836 -6.9419 39 1 6.5355 4.7991 -3.6663 40 1 2.2140 2.3477 -1.9412 41 1 3.1166 0.7741 -1.8410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708645799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:30 Heat of formation + Delta-G solvation = -5.047030 kcal Electronic energy + Delta-G solvation = -20862.768696 eV Core-core repulsion = 17742.650161 eV Total energy + Delta-G solvation = -3120.118535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.74447 -38.15754 -36.66305 -34.93137 -33.36264 -31.90603 -30.18951 -28.38231 -26.88694 -25.88441 -25.15727 -24.66724 -22.34744 -21.40120 -19.77664 -19.50931 -17.24311 -17.02994 -16.20251 -15.89390 -15.70237 -15.37184 -15.06298 -14.94877 -14.38577 -14.14611 -13.58214 -13.09546 -12.79314 -12.58189 -12.54144 -12.28115 -12.04859 -11.92456 -11.66665 -11.45851 -11.30600 -10.98583 -10.82867 -10.68105 -10.51588 -10.38495 -9.93204 -9.72047 -9.63585 -9.48368 -8.99472 -7.90746 -7.46530 -6.78300 -5.76991 -4.17406 2.79482 3.05441 3.22094 3.39641 3.46792 3.58066 4.13157 4.13753 4.44525 4.55845 4.66075 4.72107 4.78488 5.00112 5.12328 5.16924 5.31559 5.37853 5.41911 5.60490 5.62901 5.66779 5.79525 5.88229 6.00101 6.12981 6.16385 6.32729 6.42486 6.76699 6.86127 7.03052 7.21350 7.31396 7.44472 7.57666 7.77415 8.01149 8.33237 8.49699 8.61707 8.71382 8.92208 9.10727 9.17041 10.25268 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.004123 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.660275 B = 6788.929718 C = 7728.948700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.059 3.941 4 H 0.085 0.915 5 C -0.126 4.126 6 C -0.121 4.121 7 H 0.095 0.905 8 C 0.151 3.849 9 N -0.763 5.763 10 C 0.198 3.802 11 C -0.255 4.255 12 C -0.144 4.144 13 C 0.098 3.902 14 N -0.886 5.886 15 C 0.081 3.919 16 C -0.451 4.451 17 H 0.086 0.914 18 C 0.084 3.916 19 N -0.824 5.824 20 Si 0.916 3.084 21 H -0.277 1.277 22 H -0.299 1.299 23 H -0.245 1.245 24 C -0.272 4.272 25 C -0.148 4.148 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.387 0.613 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.376 0.624 37 H 0.393 0.607 38 H 0.280 0.720 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.666 -8.752 10.222 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C 0.001 3.999 4 H 0.103 0.897 5 C -0.164 4.164 6 C -0.140 4.140 7 H 0.113 0.887 8 C 0.026 3.974 9 N -0.398 5.398 10 C 0.098 3.902 11 C -0.279 4.279 12 C -0.169 4.169 13 C -0.004 4.004 14 N -0.428 5.428 15 C 0.075 3.925 16 C -0.481 4.481 17 H 0.104 0.896 18 C -0.132 4.132 19 N -0.450 5.450 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.227 1.227 23 H -0.168 1.168 24 C -0.297 4.297 25 C -0.186 4.186 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.220 0.780 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.202 0.798 37 H 0.221 0.779 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.638 -8.842 10.183 17.814 hybrid contribution -0.946 0.317 -0.434 1.088 sum -12.584 -8.525 9.749 18.057 Atomic orbital electron populations 1.22767 0.81495 1.02598 0.99809 1.87957 1.19397 1.27670 1.94616 1.23775 0.93841 0.84923 0.97376 0.89679 1.23196 0.95055 1.00410 0.97715 1.22538 0.95127 0.99416 0.96869 0.88691 1.20980 0.92600 0.92135 0.91701 1.44390 1.14155 1.33090 1.48133 1.17347 0.84252 0.95027 0.93546 1.19619 0.95270 1.03095 1.09896 1.19796 0.96579 0.99786 1.00728 1.17748 0.87669 0.96374 0.98588 1.41864 1.13738 1.35832 1.51381 1.17130 0.90555 0.91291 0.93539 1.19079 0.96781 1.16745 1.15475 0.89603 1.26046 1.00094 0.93173 0.93896 1.69746 1.36313 1.14631 1.24264 0.86229 0.80985 0.82827 0.75600 1.20339 1.22672 1.16823 1.20198 0.99521 1.03662 1.06290 1.23579 0.97190 1.01076 0.96760 0.94184 0.94099 0.89832 0.88827 0.90898 0.93047 0.93082 0.78038 0.89130 0.89173 0.79827 0.77866 0.90941 0.88414 0.91381 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.33 16 2 O -0.38 -4.24 10.71 -35.23 -0.38 -4.62 16 3 C 0.06 0.59 4.31 -25.92 -0.11 0.48 16 4 H 0.09 0.72 7.87 -51.93 -0.41 0.32 16 5 C -0.13 -1.26 7.47 -25.91 -0.19 -1.46 16 6 C -0.12 -1.38 3.75 -89.81 -0.34 -1.71 16 7 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 8 C 0.15 2.20 4.74 -4.05 -0.02 2.18 16 9 N -0.76 -13.85 5.74 -58.64 -0.34 -14.18 16 10 C 0.20 4.39 6.64 -83.78 -0.56 3.83 16 11 C -0.25 -5.51 9.31 -39.14 -0.36 -5.87 16 12 C -0.14 -3.16 9.86 -39.46 -0.39 -3.54 16 13 C 0.10 2.30 6.79 -83.23 -0.56 1.74 16 14 N -0.89 -17.83 8.98 32.75 0.29 -17.54 16 15 C 0.08 2.08 5.11 -106.66 -0.54 1.53 16 16 C -0.45 -12.26 8.91 -37.91 -0.34 -12.59 16 17 H 0.09 2.40 7.03 -52.49 -0.37 2.03 16 18 C 0.08 2.27 5.41 -17.33 -0.09 2.17 16 19 N -0.82 -22.54 13.93 55.54 0.77 -21.77 16 20 Si 0.92 21.83 24.52 -169.99 -4.17 17.66 16 21 H -0.28 -6.39 6.71 56.52 0.38 -6.01 16 22 H -0.30 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.25 -6.09 6.85 56.52 0.39 -5.70 16 24 C -0.27 -6.73 6.97 -38.75 -0.27 -7.00 16 25 C -0.15 -1.68 7.46 -25.92 -0.19 -1.87 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.78 7.64 -51.93 -0.40 0.39 16 32 H 0.05 0.75 7.94 -51.93 -0.41 0.34 16 33 H 0.39 6.65 8.48 -40.82 -0.35 6.31 16 34 H 0.09 1.76 6.69 -52.48 -0.35 1.41 16 35 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 36 H 0.38 6.31 8.83 -40.82 -0.36 5.95 16 37 H 0.39 7.97 7.13 -40.82 -0.29 7.68 16 38 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 39 H 0.10 2.44 4.77 -52.48 -0.25 2.19 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.09 1.17 7.90 -51.93 -0.41 0.76 16 LS Contribution 329.72 15.07 4.97 4.97 Total: -1.00 -29.69 329.72 -7.87 -37.56 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -6.15 Total: 18.71 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -2.88 Total: -20.79 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.73 Total: -53.49 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.38 Total: -4.62 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.17 Total: 17.66 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.69 -7.87 -37.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708645799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.511 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds