Wall clock time and date at job start Thu Apr 9 2020 14:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99688 * 2 1 4 4 H 1.08991 * 112.91227 * 18.75113 * 3 2 1 5 5 C 1.53786 * 113.61143 * 150.00280 * 3 2 1 6 6 C 1.53784 * 87.08175 * 139.98006 * 5 3 2 7 7 H 1.09004 * 113.61015 * 89.19716 * 6 5 3 8 8 C 1.52999 * 113.61271 * 220.01690 * 6 5 3 9 9 N 1.46494 * 109.47198 * 184.99901 * 8 6 5 10 10 C 1.39846 * 120.00370 * 179.97438 * 9 8 6 11 11 C 1.39603 * 119.83942 * 0.02562 * 10 9 8 12 12 C 1.38052 * 120.55414 * 179.97438 * 11 10 9 13 13 C 1.38738 * 120.21934 * 0.02562 * 12 11 10 14 14 N 1.38862 * 120.16426 * 180.02562 * 13 12 11 15 15 C 1.41558 * 119.67368 * 0.02562 * 13 12 11 16 16 C 1.41033 * 120.27018 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99642 * 329.57389 * 16 15 13 18 18 C 1.39882 * 120.00162 * 149.57735 * 16 15 13 19 19 N 1.30905 * 119.99659 * 162.17608 * 18 16 15 20 20 Si 1.86801 * 120.00185 * 342.18065 * 18 16 15 21 21 H 1.48497 * 109.47070 * 95.38178 * 20 18 16 22 22 H 1.48500 * 109.46856 * 215.38583 * 20 18 16 23 23 H 1.48496 * 109.46700 * 335.38517 * 20 18 16 24 24 C 1.38011 * 119.84434 * 179.97438 * 10 9 8 25 25 C 1.53779 * 113.61349 * 247.49519 * 3 2 1 26 26 H 1.08997 * 109.47406 * 300.00265 * 1 2 3 27 27 H 1.09000 * 109.47227 * 60.00144 * 1 2 3 28 28 H 1.09004 * 109.47284 * 179.97438 * 1 2 3 29 29 H 1.08997 * 113.61690 * 25.42296 * 5 3 2 30 30 H 1.09004 * 113.68905 * 254.53874 * 5 3 2 31 31 H 1.09003 * 109.47278 * 64.99656 * 8 6 5 32 32 H 1.09007 * 109.46783 * 305.00038 * 8 6 5 33 33 H 0.97006 * 119.99871 * 0.02562 * 9 8 6 34 34 H 1.08005 * 119.72377 * 359.97348 * 11 10 9 35 35 H 1.08003 * 119.89207 * 179.74093 * 12 11 10 36 36 H 0.97002 * 120.00156 * 359.97438 * 14 13 12 37 37 H 0.97001 * 120.00326 * 179.97438 * 14 13 12 38 38 H 0.97005 * 119.99212 * 179.97438 * 19 18 16 39 39 H 1.08003 * 120.10819 * 0.04667 * 24 10 9 40 40 H 1.08998 * 113.61507 * 105.47163 * 25 3 2 41 41 H 1.08998 * 113.61664 * 334.57156 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3142 2.0798 0.3227 5 6 3.3755 1.3719 0.7045 6 6 3.8227 2.3182 -0.4222 7 1 3.6234 3.3695 -0.2142 8 6 5.2543 2.0681 -0.9007 9 7 5.6260 3.0887 -1.8836 10 6 6.8969 3.0679 -2.4668 11 6 7.8086 2.0726 -2.1102 12 6 9.0669 2.0377 -2.6771 13 6 9.4394 2.9950 -3.6096 14 7 10.7052 2.9585 -4.1794 15 6 8.5228 4.0092 -3.9773 16 6 8.8881 4.9883 -4.9243 17 1 9.9195 5.2963 -5.0121 18 6 7.9146 5.5605 -5.7499 19 7 8.1615 6.6871 -6.3692 20 14 6.2622 4.7172 -5.9685 21 1 5.2800 5.2992 -5.0189 22 1 5.7843 4.9180 -7.3600 23 1 6.4088 3.2640 -5.7002 24 6 7.2435 4.0307 -3.3928 25 6 2.7534 1.6489 -1.3017 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.9088 0.4213 0.7139 30 1 3.3398 1.8467 1.6850 31 1 5.3167 1.0815 -1.3599 32 1 5.9351 2.1170 -0.0508 33 1 4.9908 3.7794 -2.1294 34 1 7.5271 1.3236 -1.3847 35 1 9.7652 1.2653 -2.3903 36 1 11.3316 2.2628 -3.9255 37 1 10.9631 3.6288 -4.8315 38 1 7.4865 7.0836 -6.9419 39 1 6.5355 4.7991 -3.6663 40 1 2.2140 2.3477 -1.9412 41 1 3.1166 0.7741 -1.8410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708645799.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:29 Heat of formation + Delta-G solvation = -25.386226 kcal Electronic energy + Delta-G solvation = -20863.650670 eV Core-core repulsion = 17742.650161 eV Total energy + Delta-G solvation = -3121.000509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 276.158 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.64095 -39.83874 -37.66104 -36.34056 -35.28933 -33.47210 -32.06132 -29.72515 -27.74785 -26.83687 -26.64792 -26.22663 -23.71075 -22.86860 -21.37558 -20.55451 -19.10194 -18.18419 -17.69991 -17.39679 -16.83618 -16.54819 -16.22420 -16.08562 -16.00190 -15.34659 -14.96693 -14.69324 -14.51622 -13.92405 -13.78969 -13.55065 -13.38743 -13.26926 -13.04863 -12.88621 -12.59224 -12.38150 -12.34901 -11.88659 -11.87696 -11.56502 -11.48585 -11.40970 -11.14636 -10.89740 -10.39732 -9.48219 -9.35064 -8.77545 -7.48730 -6.14997 0.92547 1.21136 1.28914 1.53681 1.54920 2.20294 2.72903 2.79827 2.96543 3.59012 3.68103 3.69400 3.73426 3.88368 3.89298 4.21144 4.41717 4.43234 4.52777 4.56874 4.69387 4.76066 4.82131 4.85249 4.86775 4.90165 4.94271 5.04470 5.09492 5.21576 5.39476 5.41067 5.50101 5.67690 5.80681 5.99851 6.20235 6.33469 6.35215 6.68629 6.88330 6.97288 7.14862 7.31873 7.58739 8.31426 Molecular weight = 276.16amu Principal moments of inertia in cm(-1) A = 0.021689 B = 0.004123 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.660275 B = 6788.929718 C = 7728.948700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.063 3.937 4 H 0.105 0.895 5 C -0.120 4.120 6 C -0.115 4.115 7 H 0.105 0.895 8 C 0.150 3.850 9 N -0.759 5.759 10 C 0.190 3.810 11 C -0.245 4.245 12 C -0.144 4.144 13 C 0.083 3.917 14 N -0.878 5.878 15 C 0.050 3.950 16 C -0.474 4.474 17 H 0.062 0.938 18 C 0.048 3.952 19 N -0.864 5.864 20 Si 0.968 3.032 21 H -0.266 1.266 22 H -0.289 1.289 23 H -0.262 1.262 24 C -0.282 4.282 25 C -0.153 4.153 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.391 0.609 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.394 0.606 37 H 0.390 0.610 38 H 0.287 0.713 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.311 -10.440 12.236 20.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.005 3.995 4 H 0.123 0.877 5 C -0.158 4.158 6 C -0.133 4.133 7 H 0.123 0.877 8 C 0.025 3.975 9 N -0.392 5.392 10 C 0.088 3.912 11 C -0.269 4.269 12 C -0.168 4.168 13 C -0.020 4.020 14 N -0.421 5.421 15 C 0.045 3.955 16 C -0.505 4.505 17 H 0.080 0.920 18 C -0.164 4.164 19 N -0.493 5.493 20 Si 0.794 3.206 21 H -0.192 1.192 22 H -0.217 1.217 23 H -0.186 1.186 24 C -0.306 4.306 25 C -0.191 4.191 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.224 0.776 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.222 0.778 37 H 0.218 0.782 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.295 -10.550 12.222 20.915 hybrid contribution -0.423 0.670 -0.886 1.189 sum -13.718 -9.880 11.336 20.354 Atomic orbital electron populations 1.22953 0.79951 1.03650 1.00710 1.87921 1.21219 1.28296 1.94675 1.23793 0.94220 0.85201 0.96248 0.87709 1.23160 0.94805 0.99758 0.98057 1.22483 0.92943 1.00363 0.97560 0.87663 1.21145 0.94739 0.90804 0.90770 1.44502 1.12747 1.33834 1.48114 1.17466 0.86068 0.94508 0.93117 1.20041 0.94855 1.02790 1.09234 1.20191 0.97285 0.99736 0.99638 1.17961 0.88413 0.96353 0.99223 1.41784 1.13162 1.36230 1.50947 1.17318 0.91952 0.92110 0.94165 1.19083 0.95931 1.18380 1.17105 0.92022 1.26612 1.02563 0.93545 0.93713 1.69778 1.37631 1.15839 1.26015 0.85428 0.78371 0.80715 0.76069 1.19215 1.21674 1.18585 1.20292 0.99107 1.04224 1.07023 1.23578 0.97604 1.00520 0.97422 0.92733 0.93701 0.88858 0.89465 0.89125 0.93525 0.92682 0.77561 0.86443 0.86055 0.77793 0.78179 0.90335 0.89260 0.91128 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.85 113.37 1.23 1.54 16 2 O -0.40 -8.12 10.71 -148.98 -1.60 -9.72 16 3 C 0.06 1.10 4.31 31.12 0.13 1.23 16 4 H 0.11 1.41 7.87 -2.39 -0.02 1.39 16 5 C -0.12 -2.05 7.47 31.12 0.23 -1.82 16 6 C -0.11 -2.30 3.75 -10.27 -0.04 -2.34 16 7 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 8 C 0.15 3.97 4.74 86.38 0.41 4.38 16 9 N -0.76 -25.91 5.74 -339.43 -1.95 -27.85 16 10 C 0.19 8.11 6.64 38.14 0.25 8.36 16 11 C -0.25 -9.90 9.31 22.56 0.21 -9.69 16 12 C -0.14 -5.93 9.86 22.35 0.22 -5.71 16 13 C 0.08 3.85 6.79 38.97 0.26 4.12 16 14 N -0.88 -34.87 8.98 -50.31 -0.45 -35.32 16 15 C 0.05 2.61 5.11 -21.18 -0.11 2.50 16 16 C -0.47 -26.68 8.91 23.35 0.21 -26.47 16 17 H 0.06 3.64 7.03 -2.91 -0.02 3.62 16 18 C 0.05 2.63 5.41 85.23 0.46 3.09 16 19 N -0.86 -48.88 13.93 21.82 0.30 -48.57 16 20 Si 0.97 45.77 24.52 68.60 1.68 47.45 16 21 H -0.27 -11.93 6.71 99.48 0.67 -11.27 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.26 -12.92 6.85 99.48 0.68 -12.24 16 24 C -0.28 -13.85 6.97 22.81 0.16 -13.69 16 25 C -0.15 -3.15 7.46 31.12 0.23 -2.92 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.09 1.62 8.10 -2.39 -0.02 1.60 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.30 7.64 -2.39 -0.02 1.28 16 32 H 0.06 1.44 7.94 -2.38 -0.02 1.43 16 33 H 0.39 12.70 8.48 -92.70 -0.79 11.91 16 34 H 0.12 4.09 6.69 -2.91 -0.02 4.08 16 35 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 36 H 0.39 12.59 8.83 -92.71 -0.82 11.77 16 37 H 0.39 16.13 7.13 -92.71 -0.66 15.47 16 38 H 0.29 14.79 8.30 -92.70 -0.77 14.02 16 39 H 0.09 4.46 4.77 -2.91 -0.01 4.44 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.82 7.90 -2.39 -0.02 1.80 16 Total: -1.00 -64.25 329.72 0.59 -63.66 By element: Atomic # 1 Polarization: 49.06 SS G_CDS: -1.27 Total: 47.79 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 3.87 Total: -37.43 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -2.09 Total: -111.75 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -1.60 Total: -9.72 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.68 Total: 47.45 kcal Total: -64.25 0.59 -63.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708645799.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.270 kcal (2) G-P(sol) polarization free energy of solvation -64.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds