Wall clock time and date at job start Thu Apr 9 2020 14:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46802 * 2 1 4 4 C 1.52994 * 109.47077 * 120.00257 * 2 1 3 5 5 O 1.42902 * 109.47218 * 295.00016 * 4 2 1 6 6 C 1.35671 * 117.00197 * 180.02562 * 5 4 2 7 7 C 1.39310 * 119.81755 * 359.72327 * 6 5 4 8 8 C 1.36437 * 120.18325 * 179.75909 * 7 6 5 9 9 C 1.40832 * 119.81327 * 0.51168 * 8 7 6 10 10 C 1.41218 * 120.18260 * 179.71693 * 9 8 7 11 11 H 1.08000 * 119.99542 * 25.96861 * 10 9 8 12 12 C 1.39893 * 120.00274 * 205.96795 * 10 9 8 13 13 N 1.30887 * 119.99656 * 14.72034 * 12 10 9 14 14 Si 1.86793 * 119.99960 * 194.71249 * 12 10 9 15 15 H 1.48506 * 109.46826 * 90.00730 * 14 12 10 16 16 H 1.48499 * 109.47107 * 209.99737 * 14 12 10 17 17 H 1.48493 * 109.47355 * 330.00468 * 14 12 10 18 18 C 1.40840 * 119.64148 * 359.74661 * 9 8 7 19 19 C 1.36441 * 119.80781 * 359.97438 * 18 9 8 20 20 C 1.53002 * 109.46970 * 240.00040 * 2 1 3 21 21 C 1.52999 * 109.47115 * 84.64880 * 20 2 1 22 22 C 1.52997 * 109.47082 * 63.41694 * 21 20 2 23 23 C 1.52997 * 109.47214 * 183.41585 * 21 20 2 24 24 C 1.52999 * 109.47128 * 303.41599 * 21 20 2 25 25 H 1.09001 * 109.47322 * 176.54845 * 1 2 3 26 26 H 1.09003 * 109.46958 * 296.55100 * 1 2 3 27 27 H 1.09005 * 109.47109 * 56.55105 * 1 2 3 28 28 H 1.09002 * 109.47574 * 54.99888 * 4 2 1 29 29 H 1.09001 * 109.47479 * 175.00186 * 4 2 1 30 30 H 1.07998 * 119.91034 * 0.02562 * 7 6 5 31 31 H 1.07997 * 120.09447 * 180.25495 * 8 7 6 32 32 H 0.96997 * 119.99505 * 179.97438 * 13 12 10 33 33 H 1.08000 * 120.09401 * 179.97438 * 18 9 8 34 34 H 1.07998 * 119.90108 * 179.97438 * 19 18 9 35 35 H 1.08999 * 109.46944 * 204.65031 * 20 2 1 36 36 H 1.09006 * 109.47223 * 324.64882 * 20 2 1 37 37 H 1.09003 * 109.47358 * 59.99803 * 22 21 20 38 38 H 1.08997 * 109.47370 * 179.97438 * 22 21 20 39 39 H 1.09003 * 109.47205 * 299.99780 * 22 21 20 40 40 H 1.09000 * 109.47394 * 59.99725 * 23 21 20 41 41 H 1.09001 * 109.47596 * 180.02562 * 23 21 20 42 42 H 1.09000 * 109.47014 * 300.00498 * 23 21 20 43 43 H 1.08999 * 109.47017 * 68.61447 * 24 21 20 44 44 H 1.09003 * 109.47092 * 188.61258 * 24 21 20 45 45 H 1.08998 * 109.47244 * 308.61271 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 0.0167 2.4130 6 6 2.0399 -0.4901 3.6134 7 6 2.7584 -1.6825 3.6667 8 6 3.1465 -2.1963 4.8696 9 6 2.8095 -1.5234 6.0600 10 6 3.2021 -2.0514 7.3095 11 1 4.0709 -2.6893 7.3772 12 6 2.4656 -1.7482 8.4596 13 7 1.2698 -1.2267 8.3523 14 14 3.1885 -2.0876 10.1481 15 1 3.9383 -0.8937 10.6147 16 1 2.0930 -2.3887 11.1043 17 1 4.1091 -3.2501 10.0679 18 6 2.0783 -0.3213 5.9975 19 6 1.7028 0.1820 4.7862 20 6 2.0400 -0.7213 -1.2493 21 6 2.0832 0.2597 -2.4226 22 6 3.0867 1.3740 -2.1191 23 6 2.5116 -0.4808 -3.6910 24 6 0.6944 0.8669 -2.6310 25 1 -0.3634 -1.0258 -0.0619 26 1 -0.3633 0.4594 0.9193 27 1 -0.3633 0.5665 -0.8575 28 1 1.6054 -1.7199 1.2951 29 1 3.1264 -0.7995 1.2056 30 1 3.0125 -2.1994 2.7532 31 1 3.7069 -3.1187 4.9090 32 1 0.7591 -1.0169 9.1498 33 1 1.8156 0.2005 6.9059 34 1 1.1417 1.1034 4.7366 35 1 3.0417 -1.1081 -1.0620 36 1 1.3709 -1.5472 -1.4906 37 1 4.0761 0.9414 -1.9706 38 1 3.1178 2.0726 -2.9552 39 1 2.7815 1.9016 -1.2155 40 1 1.7967 -1.2748 -3.9073 41 1 2.5428 0.2181 -4.5269 42 1 3.5009 -0.9135 -3.5425 43 1 0.4534 1.5193 -1.7917 44 1 0.6857 1.4453 -3.5549 45 1 -0.0452 0.0689 -2.6950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709233689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:32 Heat of formation + Delta-G solvation = -48.026146 kcal Electronic energy + Delta-G solvation = -21188.668614 eV Core-core repulsion = 18170.226708 eV Total energy + Delta-G solvation = -3018.441906 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.26595 -38.28627 -36.35122 -33.66651 -32.94040 -29.74743 -28.95030 -28.19203 -27.46375 -26.41914 -25.95125 -24.51515 -21.38268 -20.61239 -19.88532 -18.82542 -17.28247 -16.86247 -15.95695 -15.22498 -15.05675 -14.60802 -14.30412 -14.09429 -13.90374 -13.63543 -12.99677 -12.95885 -12.77278 -12.39595 -12.14030 -12.05855 -11.96521 -11.87108 -11.59594 -11.52686 -11.37416 -11.10106 -10.98415 -10.82511 -10.80389 -10.66092 -10.53801 -10.26462 -10.07048 -9.84241 -9.75378 -9.28117 -9.01157 -7.60164 -6.95821 -6.66371 -4.22843 2.81302 2.99086 3.10638 3.14056 3.24278 3.98151 4.08329 4.64596 4.65648 4.67362 4.74011 5.05654 5.11848 5.34089 5.43445 5.44318 5.47546 5.61351 5.63561 5.68149 5.71133 5.75856 5.79954 5.82489 5.86524 5.93216 5.98525 6.08148 6.13159 6.19108 6.23657 6.26122 6.29842 6.43839 6.53748 6.78232 7.02261 7.15778 7.23630 7.52146 7.60201 7.84181 8.04441 8.25073 8.51323 8.70449 8.94257 9.03162 10.27990 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.048713 B = 0.002931 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.657814 B = 9549.824081 C = 9781.611422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.091 4.091 3 H 0.082 0.918 4 C 0.073 3.927 5 O -0.327 6.327 6 C -0.002 4.002 7 C -0.170 4.170 8 C -0.196 4.196 9 C 0.086 3.914 10 C -0.464 4.464 11 H 0.075 0.925 12 C 0.073 3.927 13 N -0.804 5.804 14 Si 0.909 3.091 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.264 1.264 18 C -0.130 4.130 19 C -0.124 4.124 20 C -0.103 4.103 21 C -0.067 4.067 22 C -0.146 4.146 23 C -0.141 4.141 24 C -0.148 4.148 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.279 0.721 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.048 0.952 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 2.915 -17.239 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.109 4.109 3 H 0.100 0.900 4 C -0.003 4.003 5 O -0.243 6.243 6 C -0.045 4.045 7 C -0.189 4.189 8 C -0.215 4.215 9 C 0.083 3.917 10 C -0.494 4.494 11 H 0.093 0.907 12 C -0.143 4.143 13 N -0.431 5.431 14 Si 0.734 3.266 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.188 1.188 18 C -0.150 4.150 19 C -0.143 4.143 20 C -0.141 4.141 21 C -0.067 4.067 22 C -0.203 4.203 23 C -0.198 4.198 24 C -0.205 4.205 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.325 3.144 -17.122 17.411 hybrid contribution 0.380 -0.540 0.804 1.040 sum 0.055 2.604 -16.317 16.524 Atomic orbital electron populations 1.22255 0.94815 1.01896 1.02832 1.21200 0.96706 1.00630 0.92363 0.90005 1.22530 0.98282 0.94901 0.84603 1.85804 1.76120 1.50066 1.12301 1.18623 1.05314 0.96718 0.83890 1.20419 1.04022 0.96889 0.97564 1.20586 1.08168 1.00493 0.92294 1.17600 0.91077 0.90667 0.92314 1.19459 1.11273 1.27294 0.91402 0.90659 1.25865 0.93898 0.93218 1.01319 1.69822 1.08587 1.33249 1.31447 0.86302 0.79479 0.79696 0.81125 1.19397 1.20414 1.18782 1.21026 1.02012 0.96366 0.95564 1.19851 1.03817 0.99950 0.90639 1.21681 1.01404 0.97624 0.93390 1.20518 0.95727 0.95563 0.94941 1.21972 0.98732 0.98022 1.01594 1.21872 1.01159 1.00007 0.96765 1.22200 0.96061 1.00778 1.01432 0.93211 0.91984 0.91241 0.93464 0.93521 0.88869 0.88806 0.91035 0.85517 0.88552 0.91820 0.91667 0.92690 0.92942 0.91959 0.92763 0.92838 0.92740 0.91356 0.93273 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.51 37.16 0.32 -1.68 16 2 C -0.09 -1.16 2.10 -90.62 -0.19 -1.35 16 3 H 0.08 1.07 5.75 -51.93 -0.30 0.77 16 4 C 0.07 1.19 4.03 37.15 0.15 1.34 16 5 O -0.33 -6.78 9.60 -18.72 -0.18 -6.96 16 6 C 0.00 -0.05 6.71 -38.78 -0.26 -0.31 16 7 C -0.17 -3.95 8.96 -39.83 -0.36 -4.31 16 8 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 9 C 0.09 2.33 5.57 -106.80 -0.59 1.73 16 10 C -0.46 -12.51 9.05 -37.83 -0.34 -12.86 16 11 H 0.08 1.95 7.89 -52.49 -0.41 1.54 16 12 C 0.07 1.86 5.19 -17.33 -0.09 1.77 16 13 N -0.80 -21.16 10.86 55.55 0.60 -20.56 16 14 Si 0.91 19.01 29.58 -169.99 -5.03 13.98 16 15 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 16 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 17 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 18 C -0.13 -3.46 8.63 -39.25 -0.34 -3.80 16 19 C -0.12 -3.06 9.92 -39.83 -0.40 -3.45 16 20 C -0.10 -1.08 4.03 -26.73 -0.11 -1.18 16 21 C -0.07 -0.60 0.80 -154.51 -0.12 -0.73 16 22 C -0.15 -1.33 8.24 37.16 0.31 -1.02 16 23 C -0.14 -1.11 8.46 37.16 0.31 -0.80 16 24 C -0.15 -1.26 6.72 37.16 0.25 -1.01 16 25 H 0.05 0.60 8.05 -51.93 -0.42 0.19 16 26 H 0.06 0.89 7.73 -51.93 -0.40 0.49 16 27 H 0.07 0.71 4.14 -51.93 -0.21 0.50 16 28 H 0.05 0.78 7.64 -51.93 -0.40 0.38 16 29 H 0.05 0.75 7.53 -51.93 -0.39 0.36 16 30 H 0.09 1.90 6.27 -52.49 -0.33 1.57 16 31 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 32 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 33 H 0.13 3.44 6.14 -52.49 -0.32 3.12 16 34 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 35 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 36 H 0.06 0.66 7.85 -51.93 -0.41 0.25 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.62 6.15 -51.93 -0.32 0.30 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.62 5.83 -51.93 -0.30 0.32 16 44 H 0.05 0.38 8.13 -51.93 -0.42 -0.04 16 45 H 0.06 0.48 7.58 -51.93 -0.39 0.08 16 LS Contribution 347.65 15.07 5.24 5.24 Total: -1.00 -28.00 347.65 -8.74 -36.74 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.53 Total: 4.52 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: -1.85 Total: -32.95 kcal Atomic # 7 Polarization: -21.16 SS G_CDS: 0.60 Total: -20.56 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: -0.18 Total: -6.96 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.00 -8.74 -36.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709233689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.287 kcal (2) G-P(sol) polarization free energy of solvation -27.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds