Wall clock time and date at job start Thu Apr 9 2020 14:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.46802 * 2 1 4 4 C 1.52994 * 109.47077 * 120.00257 * 2 1 3 5 5 O 1.42902 * 109.47218 * 295.00016 * 4 2 1 6 6 C 1.35671 * 117.00197 * 180.02562 * 5 4 2 7 7 C 1.39310 * 119.81755 * 359.72327 * 6 5 4 8 8 C 1.36437 * 120.18325 * 179.75909 * 7 6 5 9 9 C 1.40832 * 119.81327 * 0.51168 * 8 7 6 10 10 C 1.41218 * 120.18260 * 179.71693 * 9 8 7 11 11 H 1.08000 * 119.99542 * 25.96861 * 10 9 8 12 12 C 1.39893 * 120.00274 * 205.96795 * 10 9 8 13 13 N 1.30887 * 119.99656 * 14.72034 * 12 10 9 14 14 Si 1.86793 * 119.99960 * 194.71249 * 12 10 9 15 15 H 1.48506 * 109.46826 * 90.00730 * 14 12 10 16 16 H 1.48499 * 109.47107 * 209.99737 * 14 12 10 17 17 H 1.48493 * 109.47355 * 330.00468 * 14 12 10 18 18 C 1.40840 * 119.64148 * 359.74661 * 9 8 7 19 19 C 1.36441 * 119.80781 * 359.97438 * 18 9 8 20 20 C 1.53002 * 109.46970 * 240.00040 * 2 1 3 21 21 C 1.52999 * 109.47115 * 84.64880 * 20 2 1 22 22 C 1.52997 * 109.47082 * 63.41694 * 21 20 2 23 23 C 1.52997 * 109.47214 * 183.41585 * 21 20 2 24 24 C 1.52999 * 109.47128 * 303.41599 * 21 20 2 25 25 H 1.09001 * 109.47322 * 176.54845 * 1 2 3 26 26 H 1.09003 * 109.46958 * 296.55100 * 1 2 3 27 27 H 1.09005 * 109.47109 * 56.55105 * 1 2 3 28 28 H 1.09002 * 109.47574 * 54.99888 * 4 2 1 29 29 H 1.09001 * 109.47479 * 175.00186 * 4 2 1 30 30 H 1.07998 * 119.91034 * 0.02562 * 7 6 5 31 31 H 1.07997 * 120.09447 * 180.25495 * 8 7 6 32 32 H 0.96997 * 119.99505 * 179.97438 * 13 12 10 33 33 H 1.08000 * 120.09401 * 179.97438 * 18 9 8 34 34 H 1.07998 * 119.90108 * 179.97438 * 19 18 9 35 35 H 1.08999 * 109.46944 * 204.65031 * 20 2 1 36 36 H 1.09006 * 109.47223 * 324.64882 * 20 2 1 37 37 H 1.09003 * 109.47358 * 59.99803 * 22 21 20 38 38 H 1.08997 * 109.47370 * 179.97438 * 22 21 20 39 39 H 1.09003 * 109.47205 * 299.99780 * 22 21 20 40 40 H 1.09000 * 109.47394 * 59.99725 * 23 21 20 41 41 H 1.09001 * 109.47596 * 180.02562 * 23 21 20 42 42 H 1.09000 * 109.47014 * 300.00498 * 23 21 20 43 43 H 1.08999 * 109.47017 * 68.61447 * 24 21 20 44 44 H 1.09003 * 109.47092 * 188.61258 * 24 21 20 45 45 H 1.08998 * 109.47244 * 308.61271 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 0.0167 2.4130 6 6 2.0399 -0.4901 3.6134 7 6 2.7584 -1.6825 3.6667 8 6 3.1465 -2.1963 4.8696 9 6 2.8095 -1.5234 6.0600 10 6 3.2021 -2.0514 7.3095 11 1 4.0709 -2.6893 7.3772 12 6 2.4656 -1.7482 8.4596 13 7 1.2698 -1.2267 8.3523 14 14 3.1885 -2.0876 10.1481 15 1 3.9383 -0.8937 10.6147 16 1 2.0930 -2.3887 11.1043 17 1 4.1091 -3.2501 10.0679 18 6 2.0783 -0.3213 5.9975 19 6 1.7028 0.1820 4.7862 20 6 2.0400 -0.7213 -1.2493 21 6 2.0832 0.2597 -2.4226 22 6 3.0867 1.3740 -2.1191 23 6 2.5116 -0.4808 -3.6910 24 6 0.6944 0.8669 -2.6310 25 1 -0.3634 -1.0258 -0.0619 26 1 -0.3633 0.4594 0.9193 27 1 -0.3633 0.5665 -0.8575 28 1 1.6054 -1.7199 1.2951 29 1 3.1264 -0.7995 1.2056 30 1 3.0125 -2.1994 2.7532 31 1 3.7069 -3.1187 4.9090 32 1 0.7591 -1.0169 9.1498 33 1 1.8156 0.2005 6.9059 34 1 1.1417 1.1034 4.7366 35 1 3.0417 -1.1081 -1.0620 36 1 1.3709 -1.5472 -1.4906 37 1 4.0761 0.9414 -1.9706 38 1 3.1178 2.0726 -2.9552 39 1 2.7815 1.9016 -1.2155 40 1 1.7967 -1.2748 -3.9073 41 1 2.5428 0.2181 -4.5269 42 1 3.5009 -0.9135 -3.5425 43 1 0.4534 1.5193 -1.7917 44 1 0.6857 1.4453 -3.5549 45 1 -0.0452 0.0689 -2.6950 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709233689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:32 Heat of formation + Delta-G solvation = -59.938860 kcal Electronic energy + Delta-G solvation = -21189.185188 eV Core-core repulsion = 18170.226708 eV Total energy + Delta-G solvation = -3018.958480 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.69928 -39.50998 -38.05835 -35.30958 -34.27300 -31.66004 -30.87407 -29.04086 -28.12986 -27.47824 -27.09817 -26.27929 -23.08335 -22.48926 -21.16559 -19.64572 -19.21946 -18.51298 -17.14096 -17.00959 -16.41785 -15.77568 -15.70003 -15.41515 -15.13717 -14.69928 -14.49795 -14.12855 -14.03171 -13.91178 -13.62732 -13.50291 -13.22978 -12.84380 -12.76890 -12.65387 -12.62492 -12.45079 -12.37112 -12.35212 -11.95881 -11.74441 -11.62086 -11.46915 -11.39948 -11.24085 -11.09746 -10.97413 -10.88269 -9.56731 -8.89771 -8.57298 -6.24115 0.94546 1.02157 1.39761 1.52356 1.53337 2.23346 2.62290 2.74397 3.69188 3.79674 3.85376 3.93572 4.09211 4.13849 4.27877 4.34376 4.36882 4.48257 4.60692 4.69913 4.71885 4.82606 4.84496 4.88572 4.95517 4.98122 5.02790 5.05637 5.07751 5.12831 5.16541 5.21653 5.25556 5.28971 5.38170 5.45058 5.47350 5.57396 5.59587 5.63754 5.66152 5.89257 6.05602 6.26760 6.57441 6.81687 6.95481 7.10483 8.39201 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.048713 B = 0.002931 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.657814 B = 9549.824081 C = 9781.611422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.083 4.083 3 H 0.079 0.921 4 C 0.064 3.936 5 O -0.334 6.334 6 C 0.004 3.996 7 C -0.169 4.169 8 C -0.206 4.206 9 C 0.053 3.947 10 C -0.499 4.499 11 H 0.075 0.925 12 C 0.031 3.969 13 N -0.836 5.836 14 Si 0.985 3.015 15 H -0.263 1.263 16 H -0.269 1.269 17 H -0.259 1.259 18 C -0.149 4.149 19 C -0.136 4.136 20 C -0.099 4.099 21 C -0.066 4.066 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.149 4.149 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.287 0.713 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.272 2.589 -18.680 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.101 4.101 3 H 0.098 0.902 4 C -0.011 4.011 5 O -0.250 6.250 6 C -0.040 4.040 7 C -0.188 4.188 8 C -0.226 4.226 9 C 0.051 3.949 10 C -0.529 4.529 11 H 0.093 0.907 12 C -0.182 4.182 13 N -0.463 5.463 14 Si 0.806 3.194 15 H -0.187 1.187 16 H -0.194 1.194 17 H -0.183 1.183 18 C -0.168 4.168 19 C -0.155 4.155 20 C -0.136 4.136 21 C -0.066 4.066 22 C -0.204 4.204 23 C -0.196 4.196 24 C -0.205 4.205 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.039 2.821 -18.595 18.807 hybrid contribution 0.256 -0.409 1.077 1.180 sum 0.216 2.412 -17.518 17.685 Atomic orbital electron populations 1.22270 0.94528 1.02226 1.02595 1.21197 0.96892 1.00411 0.91617 0.90235 1.22909 0.98856 0.95236 0.84131 1.85816 1.75974 1.50798 1.12403 1.18717 1.04100 0.96349 0.84804 1.20696 1.03138 0.96767 0.98161 1.20819 1.08339 1.00938 0.92468 1.17957 0.92127 0.91349 0.93455 1.19715 1.12050 1.28684 0.92468 0.90663 1.26749 0.93884 0.92530 1.05076 1.69883 1.09690 1.33784 1.32970 0.85160 0.78774 0.79688 0.75787 1.18737 1.19380 1.18260 1.20958 1.03302 0.96764 0.95804 1.20025 1.04025 1.00640 0.90777 1.21663 1.01387 0.97946 0.92632 1.20508 0.96034 0.95219 0.94804 1.21979 0.98667 0.98247 1.01505 1.21848 1.01246 1.00196 0.96297 1.22190 0.95785 1.00883 1.01675 0.92941 0.94452 0.88947 0.93317 0.92996 0.85809 0.87706 0.90292 0.86971 0.87321 0.91808 0.90972 0.92853 0.91909 0.93071 0.92328 0.91998 0.92732 0.92091 0.92220 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 8.51 71.98 0.61 -3.11 16 2 C -0.08 -1.98 2.10 -10.79 -0.02 -2.00 16 3 H 0.08 1.97 5.75 -2.39 -0.01 1.95 16 4 C 0.06 2.00 4.03 71.98 0.29 2.29 16 5 O -0.33 -13.61 9.60 -89.88 -0.86 -14.48 16 6 C 0.00 0.20 6.71 22.79 0.15 0.35 16 7 C -0.17 -7.74 8.96 22.11 0.20 -7.54 16 8 C -0.21 -10.41 9.74 22.48 0.22 -10.19 16 9 C 0.05 2.97 5.57 -21.28 -0.12 2.85 16 10 C -0.50 -27.55 9.05 23.40 0.21 -27.34 16 11 H 0.08 3.99 7.89 -2.91 -0.02 3.97 16 12 C 0.03 1.58 5.19 85.23 0.44 2.03 16 13 N -0.84 -44.92 10.86 21.82 0.24 -44.68 16 14 Si 0.98 39.08 29.58 68.60 2.03 41.11 16 15 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 16 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 18 C -0.15 -8.17 8.63 22.49 0.19 -7.97 16 19 C -0.14 -6.83 9.92 22.11 0.22 -6.61 16 20 C -0.10 -1.83 4.03 30.59 0.12 -1.71 16 21 C -0.07 -1.02 0.80 -52.18 -0.04 -1.06 16 22 C -0.15 -2.40 8.24 71.98 0.59 -1.80 16 23 C -0.14 -1.82 8.46 71.98 0.61 -1.21 16 24 C -0.15 -2.15 6.72 71.98 0.48 -1.67 16 25 H 0.05 1.18 8.05 -2.39 -0.02 1.17 16 26 H 0.04 1.05 7.73 -2.39 -0.02 1.03 16 27 H 0.09 1.72 4.14 -2.38 -0.01 1.71 16 28 H 0.05 1.52 7.64 -2.39 -0.02 1.50 16 29 H 0.05 1.58 7.53 -2.39 -0.02 1.56 16 30 H 0.12 4.81 6.27 -2.91 -0.02 4.79 16 31 H 0.10 4.93 8.06 -2.91 -0.02 4.90 16 32 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 33 H 0.11 6.37 6.14 -2.91 -0.02 6.36 16 34 H 0.11 5.04 8.06 -2.91 -0.02 5.01 16 35 H 0.06 1.20 7.82 -2.39 -0.02 1.18 16 36 H 0.07 1.26 7.85 -2.38 -0.02 1.24 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.05 0.94 6.15 -2.39 -0.01 0.93 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 0.97 5.83 -2.39 -0.01 0.96 16 44 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 45 H 0.06 0.85 7.58 -2.39 -0.02 0.83 16 Total: -1.00 -60.57 347.65 6.52 -54.06 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.95 Total: 28.69 kcal Atomic # 6 Polarization: -68.87 SS G_CDS: 4.17 Total: -64.70 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.24 Total: -44.68 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.86 Total: -14.48 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -60.57 6.52 -54.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709233689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.884 kcal (2) G-P(sol) polarization free energy of solvation -60.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds