Wall clock time and date at job start Thu Apr 9 2020 14:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47210 * 2 1 4 4 C 1.52997 * 109.47128 * 239.99480 * 2 1 3 5 5 O 1.42906 * 109.46981 * 65.00042 * 4 2 1 6 6 C 1.35676 * 116.99944 * 180.02562 * 5 4 2 7 7 C 1.39315 * 119.81288 * 180.02562 * 6 5 4 8 8 C 1.36437 * 120.17719 * 180.25267 * 7 6 5 9 9 C 1.40835 * 119.81743 * 359.45946 * 8 7 6 10 10 C 1.41213 * 120.17873 * 180.25416 * 9 8 7 11 11 H 1.08001 * 119.99622 * 210.29255 * 10 9 8 12 12 C 1.39886 * 120.00219 * 30.29732 * 10 9 8 13 13 N 1.30874 * 120.00156 * 11.13645 * 12 10 9 14 14 Si 1.86800 * 119.99950 * 191.13853 * 12 10 9 15 15 H 1.48505 * 109.47301 * 59.99833 * 14 12 10 16 16 H 1.48498 * 109.47298 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47171 * 300.00014 * 14 12 10 18 18 C 1.40836 * 119.63727 * 0.53270 * 9 8 7 19 19 C 1.36433 * 119.81196 * 359.74234 * 18 9 8 20 20 C 1.52998 * 109.47368 * 119.99679 * 2 1 3 21 21 C 1.53000 * 109.47157 * 293.10532 * 20 2 1 22 22 C 1.53001 * 109.47188 * 77.84315 * 21 20 2 23 23 C 1.53008 * 109.47251 * 197.84291 * 21 20 2 24 24 C 1.53002 * 109.47115 * 317.84333 * 21 20 2 25 25 H 1.09006 * 109.46807 * 201.83846 * 1 2 3 26 26 H 1.08998 * 109.47321 * 321.83133 * 1 2 3 27 27 H 1.08989 * 109.47151 * 81.83730 * 1 2 3 28 28 H 1.08999 * 109.47256 * 304.99806 * 4 2 1 29 29 H 1.09004 * 109.47084 * 184.99423 * 4 2 1 30 30 H 1.07998 * 119.90943 * 359.97438 * 7 6 5 31 31 H 1.08010 * 120.08926 * 179.70374 * 8 7 6 32 32 H 0.97005 * 120.00292 * 180.02562 * 13 12 10 33 33 H 1.07995 * 120.09075 * 179.71035 * 18 9 8 34 34 H 1.07996 * 119.90959 * 179.97438 * 19 18 9 35 35 H 1.09007 * 109.47572 * 53.10205 * 20 2 1 36 36 H 1.09002 * 109.47603 * 173.10590 * 20 2 1 37 37 H 1.09005 * 109.46587 * 63.04276 * 22 21 20 38 38 H 1.08997 * 109.46919 * 183.03729 * 22 21 20 39 39 H 1.08994 * 109.47323 * 303.03972 * 22 21 20 40 40 H 1.09002 * 109.46631 * 60.00265 * 23 21 20 41 41 H 1.09002 * 109.46916 * 179.97438 * 23 21 20 42 42 H 1.08997 * 109.46800 * 300.00162 * 23 21 20 43 43 H 1.09002 * 109.46828 * 60.00335 * 24 21 20 44 44 H 1.08997 * 109.47197 * 180.02562 * 24 21 20 45 45 H 1.08994 * 109.46926 * 300.00114 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.6619 0.0166 -2.4131 6 6 2.0390 -0.4908 -3.6135 7 6 1.7019 0.1813 -4.7863 8 6 2.0728 -0.3249 -5.9978 9 6 2.8082 -1.5244 -6.0600 10 6 3.2007 -2.0524 -7.3096 11 1 3.3058 -3.1199 -7.4357 12 6 3.4534 -1.1929 -8.3839 13 7 3.5407 0.0974 -8.1831 14 14 3.6661 -1.8868 -10.1051 15 1 2.4304 -2.6070 -10.5048 16 1 3.9219 -0.7771 -11.0581 17 1 4.8146 -2.8281 -10.1209 18 6 3.1449 -2.1975 -4.8696 19 6 2.7615 -1.6808 -3.6666 20 6 2.0400 -0.7212 1.2492 21 6 1.6764 0.0932 2.4924 22 6 0.1994 -0.1218 2.8289 23 6 2.5394 -0.3623 3.6710 24 6 1.9267 1.5779 2.2208 25 1 -0.3633 -0.9540 0.3823 26 1 -0.3634 0.8079 0.6351 27 1 -0.3633 0.1459 -1.0171 28 1 1.6054 -1.7199 -1.2950 29 1 3.1263 -0.7995 -1.2055 30 1 1.1415 1.1032 -4.7366 31 1 1.8065 0.1948 -6.9064 32 1 3.7156 0.6935 -8.9282 33 1 3.7046 -3.1202 -4.9091 34 1 3.0185 -2.1958 -2.7528 35 1 1.5795 -1.7071 1.3133 36 1 3.1231 -0.8293 1.1898 37 1 0.0318 -1.1703 3.0751 38 1 -0.0731 0.4998 3.6818 39 1 -0.4126 0.1520 1.9695 40 1 3.5916 -0.2091 3.4312 41 1 2.2806 0.2182 4.5565 42 1 2.3610 -1.4200 3.8644 43 1 1.3118 1.9024 1.3813 44 1 1.6681 2.1580 3.1066 45 1 2.9789 1.7310 1.9811 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709233697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:51:36 Heat of formation + Delta-G solvation = -43.858701 kcal Electronic energy + Delta-G solvation = -21193.163620 eV Core-core repulsion = 18174.902428 eV Total energy + Delta-G solvation = -3018.261192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 276.183 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.34807 -38.34015 -36.35606 -33.60779 -32.89205 -29.75741 -28.95437 -28.21670 -27.50146 -26.49135 -25.96595 -24.50988 -21.38642 -20.62644 -19.87333 -18.74425 -17.26993 -16.87632 -15.96827 -15.24081 -15.03225 -14.62623 -14.53416 -14.16177 -13.90362 -13.69433 -13.00542 -12.63475 -12.62548 -12.46724 -12.22881 -12.14175 -12.00227 -11.82518 -11.61456 -11.50255 -11.37860 -11.09317 -11.03197 -10.86580 -10.81811 -10.62898 -10.46059 -10.33168 -9.99147 -9.80768 -9.76096 -9.27559 -9.04050 -7.61576 -6.91592 -6.63471 -4.24073 2.82908 2.97504 3.10827 3.13789 3.23916 3.99731 4.05108 4.65855 4.68507 4.69518 4.75556 5.02336 5.12305 5.32715 5.43027 5.45571 5.46410 5.62170 5.65190 5.67578 5.70673 5.73040 5.81488 5.82769 5.85699 5.92401 5.98131 6.06017 6.11742 6.17445 6.21494 6.24507 6.28302 6.42542 6.53346 6.76605 7.01073 7.15177 7.23825 7.49764 7.59950 7.82168 8.04576 8.24258 8.50073 8.69762 8.95116 9.02465 10.32418 Molecular weight = 276.18amu Principal moments of inertia in cm(-1) A = 0.049999 B = 0.002893 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.876673 B = 9674.867236 C = 9826.276477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 H 0.085 0.915 4 C 0.072 3.928 5 O -0.327 6.327 6 C 0.002 3.998 7 C -0.125 4.125 8 C -0.124 4.124 9 C 0.087 3.913 10 C -0.468 4.468 11 H 0.074 0.926 12 C 0.073 3.927 13 N -0.810 5.810 14 Si 0.910 3.090 15 H -0.265 1.265 16 H -0.279 1.279 17 H -0.267 1.267 18 C -0.192 4.192 19 C -0.172 4.172 20 C -0.103 4.103 21 C -0.066 4.066 22 C -0.166 4.166 23 C -0.141 4.141 24 C -0.148 4.148 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.124 0.876 32 H 0.279 0.721 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 0.832 16.973 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 H 0.103 0.897 4 C -0.004 4.004 5 O -0.243 6.243 6 C -0.041 4.041 7 C -0.144 4.144 8 C -0.144 4.144 9 C 0.085 3.915 10 C -0.498 4.498 11 H 0.092 0.908 12 C -0.142 4.142 13 N -0.437 5.437 14 Si 0.735 3.265 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.192 1.192 18 C -0.211 4.211 19 C -0.191 4.191 20 C -0.141 4.141 21 C -0.066 4.066 22 C -0.223 4.223 23 C -0.198 4.198 24 C -0.205 4.205 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.142 0.858 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.754 1.218 16.876 17.331 hybrid contribution 0.467 -0.529 -0.724 1.011 sum -3.287 0.689 16.152 16.497 Atomic orbital electron populations 1.22123 0.95019 1.01156 1.02390 1.21262 0.96601 1.00864 0.92413 0.89702 1.22488 0.98465 0.94849 0.84620 1.85802 1.75973 1.50185 1.12308 1.18635 1.05456 0.96152 0.83899 1.19853 1.04169 0.99736 0.90667 1.20977 0.99281 0.98560 0.95540 1.17589 0.89797 0.91842 0.92301 1.19389 1.41706 0.94429 0.94313 0.90764 1.25830 0.92949 0.94574 1.00884 1.69790 1.36890 1.03684 1.33365 0.86353 0.79679 0.79250 0.81256 1.19021 1.20457 1.19202 1.20640 1.06199 1.02250 0.92042 1.20432 1.04071 0.97004 0.97611 1.21675 1.00899 0.98605 0.92892 1.20473 0.95692 0.95618 0.94778 1.22445 0.95974 1.01283 1.02572 1.21895 0.99499 1.00930 0.97516 1.22030 1.01896 0.94997 1.01573 0.92777 0.92035 0.91712 0.93410 0.93443 0.88494 0.85785 0.91040 0.88743 0.88811 0.91727 0.91846 0.93036 0.93317 0.89996 0.92743 0.92901 0.92827 0.91614 0.93133 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 7.51 37.16 0.28 -1.50 16 2 C -0.09 -1.17 2.10 -90.62 -0.19 -1.36 16 3 H 0.08 1.10 5.88 -51.93 -0.31 0.79 16 4 C 0.07 1.16 4.09 37.16 0.15 1.31 16 5 O -0.33 -6.68 9.41 -18.73 -0.18 -6.86 16 6 C 0.00 0.04 6.71 -38.78 -0.26 -0.22 16 7 C -0.13 -3.07 9.92 -39.83 -0.40 -3.47 16 8 C -0.12 -3.28 8.59 -39.25 -0.34 -3.62 16 9 C 0.09 2.35 5.53 -106.80 -0.59 1.76 16 10 C -0.47 -12.61 9.04 -37.84 -0.34 -12.95 16 11 H 0.07 1.92 7.87 -52.49 -0.41 1.51 16 12 C 0.07 1.87 5.23 -17.34 -0.09 1.78 16 13 N -0.81 -21.42 10.96 55.54 0.61 -20.81 16 14 Si 0.91 19.09 29.57 -169.99 -5.03 14.06 16 15 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 C -0.19 -4.79 9.74 -39.25 -0.38 -5.17 16 19 C -0.17 -3.97 8.96 -39.83 -0.36 -4.33 16 20 C -0.10 -1.07 4.07 -26.73 -0.11 -1.18 16 21 C -0.07 -0.59 0.78 -154.50 -0.12 -0.71 16 22 C -0.17 -1.42 7.91 37.16 0.29 -1.12 16 23 C -0.14 -1.15 8.40 37.16 0.31 -0.84 16 24 C -0.15 -1.35 7.52 37.16 0.28 -1.07 16 25 H 0.05 0.59 7.30 -51.93 -0.38 0.21 16 26 H 0.06 0.63 5.41 -51.93 -0.28 0.35 16 27 H 0.06 0.91 7.37 -51.93 -0.38 0.53 16 28 H 0.05 0.76 7.64 -51.93 -0.40 0.36 16 29 H 0.05 0.76 7.65 -51.93 -0.40 0.37 16 30 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 31 H 0.12 3.35 6.35 -52.48 -0.33 3.02 16 32 H 0.28 6.75 8.30 -40.82 -0.34 6.42 16 33 H 0.09 2.21 8.06 -52.49 -0.42 1.78 16 34 H 0.09 1.89 6.27 -52.49 -0.33 1.56 16 35 H 0.06 0.65 7.85 -51.92 -0.41 0.25 16 36 H 0.06 0.66 8.01 -51.93 -0.42 0.24 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.72 3.63 -51.93 -0.19 0.53 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.64 5.36 -51.93 -0.28 0.36 16 44 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 345.38 15.07 5.20 5.20 Total: -1.00 -27.87 345.38 -8.70 -36.57 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -7.45 Total: 4.52 kcal Atomic # 6 Polarization: -30.83 SS G_CDS: -1.86 Total: -32.68 kcal Atomic # 7 Polarization: -21.42 SS G_CDS: 0.61 Total: -20.81 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.18 Total: -6.86 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.87 -8.70 -36.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709233697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.291 kcal (2) G-P(sol) polarization free energy of solvation -27.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds